data_2QCG
#
_model_server_result.job_id            n3b9Tx7zkesEAqniF4BxBA 
_model_server_result.datetime_utc      '2024-10-14 08:23:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qcg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    2QCG 
#
_exptl.entry_id    2QCG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              403.077 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.06 
_cell.angle_gamma         90 
_cell.entry_id            2QCG 
_cell.length_a            69.184 
_cell.length_b            61.699 
_cell.length_c            69.169 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QCG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C9 H12 Br N2 O9 P' 
_chem_comp.formula_weight    403.077 
_chem_comp.id                5BU 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P OP1 5BU doub 1 n n 
P OP2 5BU sing 2 n n 
P OP3 5BU sing 3 n n 
P O5' 5BU sing 4 n n 
OP2 HOP2 5BU sing 5 n n 
OP3 HOP3 5BU sing 6 n n 
O5' C5' 5BU sing 7 n n 
C5' C4' 5BU sing 8 n n 
C5' H5' 5BU sing 9 n n 
C5' "H5''" 5BU sing 10 n n 
C4' O4' 5BU sing 11 n n 
C4' C3' 5BU sing 12 n n 
C4' H4' 5BU sing 13 n n 
O4' C1' 5BU sing 14 n n 
C3' O3' 5BU sing 15 n n 
C3' C2' 5BU sing 16 n n 
C3' H3' 5BU sing 17 n n 
O3' HO3' 5BU sing 18 n n 
C2' O2' 5BU sing 19 n n 
C2' C1' 5BU sing 20 n n 
C2' H2' 5BU sing 21 n n 
O2' HO2' 5BU sing 22 n n 
C1' N1 5BU sing 23 n n 
C1' H1' 5BU sing 24 n n 
N1 C2 5BU sing 25 n n 
N1 C6 5BU sing 26 n n 
C2 O2 5BU doub 27 n n 
C2 N3 5BU sing 28 n n 
N3 C4 5BU sing 29 n n 
N3 H3 5BU sing 30 n n 
C4 O4 5BU doub 31 n n 
C4 C5 5BU sing 32 n n 
C5 C6 5BU doub 33 n n 
C5 BR 5BU sing 34 n n 
C6 H6 5BU sing 35 n n 
#
_atom_sites.entry_id                     2QCG 
_atom_sites.fract_transf_matrix[1][1]    0.014454 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006153 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015713 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5BU A 1 1 1 5BU 5BU . 
D 2 5BU B 1 2 2 5BU 5BU . 
E 3 HOH A 1 481 2 HOH HOH . 
E 3 HOH A 2 482 5 HOH HOH . 
E 3 HOH A 3 483 6 HOH HOH . 
E 3 HOH A 4 484 7 HOH HOH . 
E 3 HOH A 5 485 8 HOH HOH . 
E 3 HOH A 6 486 9 HOH HOH . 
E 3 HOH A 7 487 11 HOH HOH . 
E 3 HOH A 8 488 14 HOH HOH . 
E 3 HOH A 9 489 15 HOH HOH . 
E 3 HOH A 10 490 16 HOH HOH . 
E 3 HOH A 11 491 17 HOH HOH . 
E 3 HOH A 12 492 18 HOH HOH . 
E 3 HOH A 13 493 21 HOH HOH . 
E 3 HOH A 14 494 24 HOH HOH . 
E 3 HOH A 15 495 25 HOH HOH . 
E 3 HOH A 16 496 26 HOH HOH . 
E 3 HOH A 17 497 27 HOH HOH . 
E 3 HOH A 18 498 31 HOH HOH . 
E 3 HOH A 19 499 33 HOH HOH . 
E 3 HOH A 20 500 35 HOH HOH . 
E 3 HOH A 21 501 37 HOH HOH . 
E 3 HOH A 22 502 38 HOH HOH . 
E 3 HOH A 23 503 39 HOH HOH . 
E 3 HOH A 24 504 40 HOH HOH . 
E 3 HOH A 25 505 41 HOH HOH . 
E 3 HOH A 26 506 42 HOH HOH . 
E 3 HOH A 27 507 45 HOH HOH . 
E 3 HOH A 28 508 47 HOH HOH . 
E 3 HOH A 29 509 50 HOH HOH . 
E 3 HOH A 30 510 53 HOH HOH . 
E 3 HOH A 31 511 56 HOH HOH . 
E 3 HOH A 32 512 57 HOH HOH . 
E 3 HOH A 33 513 58 HOH HOH . 
E 3 HOH A 34 514 59 HOH HOH . 
E 3 HOH A 35 515 61 HOH HOH . 
E 3 HOH A 36 516 62 HOH HOH . 
E 3 HOH A 37 517 63 HOH HOH . 
E 3 HOH A 38 518 64 HOH HOH . 
E 3 HOH A 39 519 71 HOH HOH . 
E 3 HOH A 40 520 73 HOH HOH . 
E 3 HOH A 41 521 74 HOH HOH . 
E 3 HOH A 42 522 78 HOH HOH . 
E 3 HOH A 43 523 79 HOH HOH . 
E 3 HOH A 44 524 80 HOH HOH . 
E 3 HOH A 45 525 81 HOH HOH . 
E 3 HOH A 46 526 82 HOH HOH . 
E 3 HOH A 47 527 84 HOH HOH . 
E 3 HOH A 48 528 85 HOH HOH . 
E 3 HOH A 49 529 86 HOH HOH . 
E 3 HOH A 50 530 90 HOH HOH . 
E 3 HOH A 51 531 93 HOH HOH . 
E 3 HOH A 52 532 95 HOH HOH . 
E 3 HOH A 53 533 97 HOH HOH . 
E 3 HOH A 54 534 100 HOH HOH . 
E 3 HOH A 55 535 101 HOH HOH . 
E 3 HOH A 56 536 102 HOH HOH . 
E 3 HOH A 57 537 103 HOH HOH . 
E 3 HOH A 58 538 104 HOH HOH . 
E 3 HOH A 59 539 105 HOH HOH . 
E 3 HOH A 60 540 106 HOH HOH . 
E 3 HOH A 61 541 108 HOH HOH . 
E 3 HOH A 62 542 109 HOH HOH . 
E 3 HOH A 63 543 110 HOH HOH . 
E 3 HOH A 64 544 112 HOH HOH . 
E 3 HOH A 65 545 113 HOH HOH . 
E 3 HOH A 66 546 117 HOH HOH . 
E 3 HOH A 67 547 118 HOH HOH . 
E 3 HOH A 68 548 119 HOH HOH . 
E 3 HOH A 69 549 120 HOH HOH . 
E 3 HOH A 70 550 121 HOH HOH . 
E 3 HOH A 71 551 126 HOH HOH . 
E 3 HOH A 72 552 128 HOH HOH . 
E 3 HOH A 73 553 129 HOH HOH . 
E 3 HOH A 74 554 130 HOH HOH . 
F 3 HOH B 1 481 1 HOH HOH . 
F 3 HOH B 2 482 3 HOH HOH . 
F 3 HOH B 3 483 4 HOH HOH . 
F 3 HOH B 4 484 10 HOH HOH . 
F 3 HOH B 5 485 12 HOH HOH . 
F 3 HOH B 6 486 13 HOH HOH . 
F 3 HOH B 7 487 19 HOH HOH . 
F 3 HOH B 8 488 20 HOH HOH . 
F 3 HOH B 9 489 22 HOH HOH . 
F 3 HOH B 10 490 23 HOH HOH . 
F 3 HOH B 11 491 28 HOH HOH . 
F 3 HOH B 12 492 29 HOH HOH . 
F 3 HOH B 13 493 30 HOH HOH . 
F 3 HOH B 14 494 32 HOH HOH . 
F 3 HOH B 15 495 34 HOH HOH . 
F 3 HOH B 16 496 36 HOH HOH . 
F 3 HOH B 17 497 43 HOH HOH . 
F 3 HOH B 18 498 44 HOH HOH . 
F 3 HOH B 19 499 46 HOH HOH . 
F 3 HOH B 20 500 48 HOH HOH . 
F 3 HOH B 21 501 49 HOH HOH . 
F 3 HOH B 22 502 51 HOH HOH . 
F 3 HOH B 23 503 52 HOH HOH . 
F 3 HOH B 24 504 54 HOH HOH . 
F 3 HOH B 25 505 55 HOH HOH . 
F 3 HOH B 26 506 60 HOH HOH . 
F 3 HOH B 27 507 65 HOH HOH . 
F 3 HOH B 28 508 66 HOH HOH . 
F 3 HOH B 29 509 67 HOH HOH . 
F 3 HOH B 30 510 68 HOH HOH . 
F 3 HOH B 31 511 69 HOH HOH . 
F 3 HOH B 32 512 70 HOH HOH . 
F 3 HOH B 33 513 72 HOH HOH . 
F 3 HOH B 34 514 75 HOH HOH . 
F 3 HOH B 35 515 76 HOH HOH . 
F 3 HOH B 36 516 77 HOH HOH . 
F 3 HOH B 37 517 83 HOH HOH . 
F 3 HOH B 38 518 87 HOH HOH . 
F 3 HOH B 39 519 88 HOH HOH . 
F 3 HOH B 40 520 89 HOH HOH . 
F 3 HOH B 41 521 91 HOH HOH . 
F 3 HOH B 42 522 92 HOH HOH . 
F 3 HOH B 43 523 94 HOH HOH . 
F 3 HOH B 44 524 96 HOH HOH . 
F 3 HOH B 45 525 98 HOH HOH . 
F 3 HOH B 46 526 99 HOH HOH . 
F 3 HOH B 47 527 107 HOH HOH . 
F 3 HOH B 48 528 111 HOH HOH . 
F 3 HOH B 49 529 114 HOH HOH . 
F 3 HOH B 50 530 115 HOH HOH . 
F 3 HOH B 51 531 116 HOH HOH . 
F 3 HOH B 52 532 122 HOH HOH . 
F 3 HOH B 53 533 123 HOH HOH . 
F 3 HOH B 54 534 124 HOH HOH . 
F 3 HOH B 55 535 125 HOH HOH . 
F 3 HOH B 56 536 127 HOH HOH . 
F 3 HOH B 57 537 131 HOH HOH . 
F 3 HOH B 58 538 132 HOH HOH . 
F 3 HOH B 59 539 133 HOH HOH . 
F 3 HOH B 60 540 134 HOH HOH . 
F 3 HOH B 61 541 135 HOH HOH . 
F 3 HOH B 62 542 136 HOH HOH . 
F 3 HOH B 63 543 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5BU . . . D 2 25.639 -7.895 13.034 1 20.35 ? P 5BU 2 B 1 
HETATM 2 O OP1 5BU . . . D 2 26.226 -8.835 14.065 1 20.83 ? OP1 5BU 2 B 1 
HETATM 3 O OP2 5BU . . . D 2 24.287 -8.42 12.52 1 18.5 ? OP2 5BU 2 B 1 
HETATM 4 O OP3 5BU . . . D 2 26.584 -7.533 11.946 1 22.44 ? OP3 5BU 2 B 1 
HETATM 5 O O5' 5BU . . . D 2 25.377 -6.544 13.9 1 20.16 ? O5' 5BU 2 B 1 
HETATM 6 C C5' 5BU . . . D 2 24.779 -5.403 13.282 1 20.29 ? C5' 5BU 2 B 1 
HETATM 7 C C4' 5BU . . . D 2 24.608 -4.288 14.339 1 20.98 ? C4' 5BU 2 B 1 
HETATM 8 O O4' 5BU . . . D 2 23.955 -3.219 13.684 1 21.64 ? O4' 5BU 2 B 1 
HETATM 9 C C3' 5BU . . . D 2 23.831 -4.69 15.585 1 20.03 ? C3' 5BU 2 B 1 
HETATM 10 O O3' 5BU . . . D 2 24.399 -4.136 16.796 1 21.13 ? O3' 5BU 2 B 1 
HETATM 11 C C2' 5BU . . . D 2 22.501 -4.076 15.361 1 20.9 ? C2' 5BU 2 B 1 
HETATM 12 O O2' 5BU . . . D 2 21.845 -3.768 16.575 1 18.87 ? O2' 5BU 2 B 1 
HETATM 13 C C1' 5BU . . . D 2 22.784 -2.868 14.46 1 23.86 ? C1' 5BU 2 B 1 
HETATM 14 N N1 5BU . . . D 2 21.736 -2.521 13.477 1 25.65 ? N1 5BU 2 B 1 
HETATM 15 C C2 5BU . . . D 2 21.326 -3.457 12.488 1 26.64 ? C2 5BU 2 B 1 
HETATM 16 O O2 5BU . . . D 2 21.822 -4.643 12.392 1 24.41 ? O2 5BU 2 B 1 
HETATM 17 N N3 5BU . . . D 2 20.35 -3.069 11.584 1 27.39 ? N3 5BU 2 B 1 
HETATM 18 C C4 5BU . . . D 2 19.77 -1.81 11.618 1 29.13 ? C4 5BU 2 B 1 
HETATM 19 O O4 5BU . . . D 2 18.877 -1.615 10.717 1 23.6 ? O4 5BU 2 B 1 
HETATM 20 C C5 5BU . . . D 2 20.171 -0.861 12.636 1 31.05 ? C5 5BU 2 B 1 
HETATM 21 C C6 5BU . . . D 2 21.171 -1.251 13.551 1 28.87 ? C6 5BU 2 B 1 
HETATM 22 BR BR 5BU . . . D 2 19.434 0.973 12.861 1 44.53 ? BR 5BU 2 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#