data_2QD0 # _model_server_result.job_id UYd4mKPkyVLVKPVTSFLlcw _model_server_result.datetime_utc '2024-11-25 18:35:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":111}' # _entry.id 2QD0 # _exptl.entry_id 2QD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QD0 _cell.length_a 43.838 _cell.length_b 59.139 _cell.length_c 65.971 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 43 A CYS 72 1_555 C FE2 FES . A FES 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc2 A SG CYS 45 A CYS 74 1_555 C FE2 FES . A FES 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 A SG CYS 54 A CYS 83 1_555 C FE1 FES . A FES 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 A ND1 HIS 58 A HIS 87 1_555 C FE1 FES . A FES 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc5 B SG CYS 43 B CYS 72 1_555 D FE1 FES . B FES 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 B SG CYS 45 B CYS 74 1_555 D FE1 FES . B FES 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc7 B SG CYS 54 B CYS 83 1_555 D FE2 FES . B FES 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc8 B ND1 HIS 58 B HIS 87 1_555 D FE2 FES . B FES 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 2QD0 _atom_sites.fract_transf_matrix[1][1] 0.022811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FES A 1 111 107 FES FES . D 2 FES B 1 111 107 FES FES . E 3 HOH A 1 112 1 HOH HOH . E 3 HOH A 2 113 3 HOH HOH . E 3 HOH A 3 114 4 HOH HOH . E 3 HOH A 4 115 5 HOH HOH . E 3 HOH A 5 116 6 HOH HOH . E 3 HOH A 6 117 7 HOH HOH . E 3 HOH A 7 118 8 HOH HOH . E 3 HOH A 8 119 12 HOH HOH . E 3 HOH A 9 120 13 HOH HOH . E 3 HOH A 10 121 14 HOH HOH . E 3 HOH A 11 122 18 HOH HOH . E 3 HOH A 12 123 22 HOH HOH . E 3 HOH A 13 124 31 HOH HOH . E 3 HOH A 14 125 37 HOH HOH . E 3 HOH A 15 126 39 HOH HOH . E 3 HOH A 16 127 49 HOH HOH . E 3 HOH A 17 128 50 HOH HOH . E 3 HOH A 18 129 51 HOH HOH . E 3 HOH A 19 130 55 HOH HOH . E 3 HOH A 20 131 58 HOH HOH . E 3 HOH A 21 132 59 HOH HOH . E 3 HOH A 22 133 67 HOH HOH . E 3 HOH A 23 134 70 HOH HOH . E 3 HOH A 24 135 72 HOH HOH . E 3 HOH A 25 136 77 HOH HOH . E 3 HOH A 26 137 78 HOH HOH . E 3 HOH A 27 138 81 HOH HOH . E 3 HOH A 28 139 83 HOH HOH . E 3 HOH A 29 140 88 HOH HOH . E 3 HOH A 30 141 89 HOH HOH . E 3 HOH A 31 142 90 HOH HOH . F 3 HOH B 1 112 2 HOH HOH . F 3 HOH B 2 113 9 HOH HOH . F 3 HOH B 3 114 10 HOH HOH . F 3 HOH B 4 115 11 HOH HOH . F 3 HOH B 5 116 15 HOH HOH . F 3 HOH B 6 117 16 HOH HOH . F 3 HOH B 7 118 17 HOH HOH . F 3 HOH B 8 119 19 HOH HOH . F 3 HOH B 9 120 20 HOH HOH . F 3 HOH B 10 121 21 HOH HOH . F 3 HOH B 11 122 23 HOH HOH . F 3 HOH B 12 123 24 HOH HOH . F 3 HOH B 13 124 25 HOH HOH . F 3 HOH B 14 125 26 HOH HOH . F 3 HOH B 15 126 27 HOH HOH . F 3 HOH B 16 127 28 HOH HOH . F 3 HOH B 17 128 29 HOH HOH . F 3 HOH B 18 129 30 HOH HOH . F 3 HOH B 19 130 32 HOH HOH . F 3 HOH B 20 131 33 HOH HOH . F 3 HOH B 21 132 34 HOH HOH . F 3 HOH B 22 133 35 HOH HOH . F 3 HOH B 23 134 36 HOH HOH . F 3 HOH B 24 135 38 HOH HOH . F 3 HOH B 25 136 40 HOH HOH . F 3 HOH B 26 137 41 HOH HOH . F 3 HOH B 27 138 42 HOH HOH . F 3 HOH B 28 139 43 HOH HOH . F 3 HOH B 29 140 44 HOH HOH . F 3 HOH B 30 141 45 HOH HOH . F 3 HOH B 31 142 46 HOH HOH . F 3 HOH B 32 143 47 HOH HOH . F 3 HOH B 33 144 48 HOH HOH . F 3 HOH B 34 145 52 HOH HOH . F 3 HOH B 35 146 53 HOH HOH . F 3 HOH B 36 147 54 HOH HOH . F 3 HOH B 37 148 56 HOH HOH . F 3 HOH B 38 149 57 HOH HOH . F 3 HOH B 39 150 60 HOH HOH . F 3 HOH B 40 151 61 HOH HOH . F 3 HOH B 41 152 62 HOH HOH . F 3 HOH B 42 153 63 HOH HOH . F 3 HOH B 43 154 64 HOH HOH . F 3 HOH B 44 155 65 HOH HOH . F 3 HOH B 45 156 66 HOH HOH . F 3 HOH B 46 157 68 HOH HOH . F 3 HOH B 47 158 69 HOH HOH . F 3 HOH B 48 159 71 HOH HOH . F 3 HOH B 49 160 73 HOH HOH . F 3 HOH B 50 161 74 HOH HOH . F 3 HOH B 51 162 75 HOH HOH . F 3 HOH B 52 163 76 HOH HOH . F 3 HOH B 53 164 79 HOH HOH . F 3 HOH B 54 165 80 HOH HOH . F 3 HOH B 55 166 82 HOH HOH . F 3 HOH B 56 167 84 HOH HOH . F 3 HOH B 57 168 85 HOH HOH . F 3 HOH B 58 169 86 HOH HOH . F 3 HOH B 59 170 87 HOH HOH . F 3 HOH B 60 171 91 HOH HOH . F 3 HOH B 61 172 92 HOH HOH . F 3 HOH B 62 173 93 HOH HOH . F 3 HOH B 63 174 94 HOH HOH . F 3 HOH B 64 175 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . C 2 -2.816 3.182 -8.608 1 42.68 ? FE1 FES 111 A 1 HETATM 2 FE FE2 FES . . . C 2 -0.933 1.257 -8.812 1 41.25 ? FE2 FES 111 A 1 HETATM 3 S S1 FES . . . C 2 -1.298 2.905 -10.248 1 37.57 ? S1 FES 111 A 1 HETATM 4 S S2 FES . . . C 2 -2.51 1.488 -7.224 1 45.88 ? S2 FES 111 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #