data_2QD5 # _model_server_result.job_id xngEQ-mQH5Q8RLFA8XlP6g _model_server_result.datetime_utc '2024-11-19 19:34:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1104}' # _entry.id 2QD5 # _exptl.entry_id 2QD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QD5 _cell.length_a 86.218 _cell.length_b 92.811 _cell.length_c 109.808 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 M N N ? 4 N N N # _chem_comp.formula 'C24 H40 O5' _chem_comp.formula_weight 408.571 _chem_comp.id CHD _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CHD sing 77 n n C1 C10 CHD sing 78 n n C1 H11 CHD sing 79 n n C1 H12A CHD sing 80 n n C2 C3 CHD sing 81 n n C2 H21 CHD sing 82 n n C2 H22 CHD sing 83 n n C3 O3 CHD sing 84 n n C3 C4 CHD sing 85 n n C3 H3 CHD sing 86 n n O3 HO3 CHD sing 87 n n C4 C5 CHD sing 88 n n C4 H41 CHD sing 89 n n C4 H42 CHD sing 90 n n C5 C6 CHD sing 91 n n C5 C10 CHD sing 92 n n C5 H5 CHD sing 93 n n C6 C7 CHD sing 94 n n C6 H61 CHD sing 95 n n C6 H62 CHD sing 96 n n C7 O7 CHD sing 97 n n C7 C8 CHD sing 98 n n C7 H7 CHD sing 99 n n O7 HO7 CHD sing 100 n n C8 C9 CHD sing 101 n n C8 C14 CHD sing 102 n n C8 H8 CHD sing 103 n n C9 C10 CHD sing 104 n n C9 C11 CHD sing 105 n n C9 H9 CHD sing 106 n n C10 C19 CHD sing 107 n n C11 C12 CHD sing 108 n n C11 H111 CHD sing 109 n n C11 H112 CHD sing 110 n n C12 O12 CHD sing 111 n n C12 C13 CHD sing 112 n n C12 H12 CHD sing 113 n n O12 HO12 CHD sing 114 n n C13 C14 CHD sing 115 n n C13 C17 CHD sing 116 n n C13 C18 CHD sing 117 n n C14 C15 CHD sing 118 n n C14 H14 CHD sing 119 n n C15 C16 CHD sing 120 n n C15 H151 CHD sing 121 n n C15 H152 CHD sing 122 n n C16 C17 CHD sing 123 n n C16 H161 CHD sing 124 n n C16 H162 CHD sing 125 n n C17 C20 CHD sing 126 n n C17 H17 CHD sing 127 n n C18 H181 CHD sing 128 n n C18 H182 CHD sing 129 n n C18 H183 CHD sing 130 n n C19 H191 CHD sing 131 n n C19 H192 CHD sing 132 n n C19 H193 CHD sing 133 n n C20 C21 CHD sing 134 n n C20 C22 CHD sing 135 n n C20 H20 CHD sing 136 n n C21 H211 CHD sing 137 n n C21 H212 CHD sing 138 n n C21 H213 CHD sing 139 n n C22 C23 CHD sing 140 n n C22 H221 CHD sing 141 n n C22 H222 CHD sing 142 n n C23 C24 CHD sing 143 n n C23 H231 CHD sing 144 n n C23 H232 CHD sing 145 n n O25 C24 CHD doub 146 n n C24 O26 CHD sing 147 n n O26 H26 CHD sing 148 n n # _atom_sites.entry_id 2QD5 _atom_sites.fract_transf_matrix[1][1] 0.011599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010775 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PB A 1 1101 1 PB HPB . D 3 FES A 1 501 1 FES FES . E 4 CHD A 1 701 1 CHD CHD . F 4 CHD A 1 702 2 CHD CHD . G 5 PP9 A 1 901 1 PP9 HPB . H 6 GOL A 1 601 1 GOL GOL . I 7 ACY A 1 801 1 ACY ACY . J 7 ACY A 1 803 3 ACY ACY . K 2 PB B 1 1102 2 PB HPB . L 3 FES B 1 502 2 FES FES . M 4 CHD B 1 1103 3 CHD CHD . N 4 CHD B 1 1104 4 CHD CHD . O 5 PP9 B 1 1105 2 PP9 HPB . P 8 OXY B 1 1001 1 OXY OXY . Q 7 ACY B 1 1106 2 ACY ACY . R 9 HOH A 1 1102 1 HOH HOH . R 9 HOH A 2 1103 4 HOH HOH . R 9 HOH A 3 1104 5 HOH HOH . R 9 HOH A 4 1105 9 HOH HOH . R 9 HOH A 5 1106 11 HOH HOH . R 9 HOH A 6 1107 12 HOH HOH . R 9 HOH A 7 1108 13 HOH HOH . R 9 HOH A 8 1109 15 HOH HOH . R 9 HOH A 9 1110 17 HOH HOH . R 9 HOH A 10 1111 18 HOH HOH . R 9 HOH A 11 1112 20 HOH HOH . R 9 HOH A 12 1113 22 HOH HOH . R 9 HOH A 13 1114 23 HOH HOH . R 9 HOH A 14 1115 24 HOH HOH . R 9 HOH A 15 1116 26 HOH HOH . R 9 HOH A 16 1117 27 HOH HOH . R 9 HOH A 17 1118 30 HOH HOH . R 9 HOH A 18 1119 32 HOH HOH . R 9 HOH A 19 1120 40 HOH HOH . R 9 HOH A 20 1121 46 HOH HOH . R 9 HOH A 21 1122 49 HOH HOH . R 9 HOH A 22 1123 51 HOH HOH . R 9 HOH A 23 1124 54 HOH HOH . R 9 HOH A 24 1125 55 HOH HOH . R 9 HOH A 25 1126 56 HOH HOH . R 9 HOH A 26 1127 60 HOH HOH . R 9 HOH A 27 1128 63 HOH HOH . R 9 HOH A 28 1129 65 HOH HOH . R 9 HOH A 29 1130 66 HOH HOH . R 9 HOH A 30 1131 67 HOH HOH . R 9 HOH A 31 1132 69 HOH HOH . R 9 HOH A 32 1133 74 HOH HOH . R 9 HOH A 33 1134 75 HOH HOH . R 9 HOH A 34 1135 78 HOH HOH . R 9 HOH A 35 1136 79 HOH HOH . R 9 HOH A 36 1137 80 HOH HOH . R 9 HOH A 37 1138 81 HOH HOH . R 9 HOH A 38 1139 83 HOH HOH . R 9 HOH A 39 1140 85 HOH HOH . R 9 HOH A 40 1141 88 HOH HOH . R 9 HOH A 41 1142 89 HOH HOH . R 9 HOH A 42 1143 91 HOH HOH . R 9 HOH A 43 1144 95 HOH HOH . R 9 HOH A 44 1145 96 HOH HOH . R 9 HOH A 45 1146 97 HOH HOH . R 9 HOH A 46 1147 100 HOH HOH . R 9 HOH A 47 1148 103 HOH HOH . R 9 HOH A 48 1149 105 HOH HOH . R 9 HOH A 49 1150 107 HOH HOH . R 9 HOH A 50 1151 108 HOH HOH . R 9 HOH A 51 1152 112 HOH HOH . R 9 HOH A 52 1153 113 HOH HOH . R 9 HOH A 53 1154 114 HOH HOH . R 9 HOH A 54 1155 115 HOH HOH . R 9 HOH A 55 1156 117 HOH HOH . R 9 HOH A 56 1157 118 HOH HOH . R 9 HOH A 57 1158 119 HOH HOH . R 9 HOH A 58 1159 120 HOH HOH . R 9 HOH A 59 1160 121 HOH HOH . R 9 HOH A 60 1161 122 HOH HOH . R 9 HOH A 61 1162 123 HOH HOH . R 9 HOH A 62 1163 124 HOH HOH . R 9 HOH A 63 1164 127 HOH HOH . R 9 HOH A 64 1165 129 HOH HOH . R 9 HOH A 65 1166 131 HOH HOH . R 9 HOH A 66 1167 132 HOH HOH . R 9 HOH A 67 1168 134 HOH HOH . R 9 HOH A 68 1169 135 HOH HOH . R 9 HOH A 69 1170 136 HOH HOH . R 9 HOH A 70 1171 138 HOH HOH . R 9 HOH A 71 1172 139 HOH HOH . R 9 HOH A 72 1173 141 HOH HOH . R 9 HOH A 73 1174 142 HOH HOH . R 9 HOH A 74 1175 143 HOH HOH . R 9 HOH A 75 1176 147 HOH HOH . R 9 HOH A 76 1177 148 HOH HOH . R 9 HOH A 77 1178 152 HOH HOH . R 9 HOH A 78 1179 153 HOH HOH . R 9 HOH A 79 1180 154 HOH HOH . R 9 HOH A 80 1181 155 HOH HOH . R 9 HOH A 81 1182 156 HOH HOH . R 9 HOH A 82 1183 157 HOH HOH . R 9 HOH A 83 1184 158 HOH HOH . R 9 HOH A 84 1185 159 HOH HOH . R 9 HOH A 85 1186 160 HOH HOH . R 9 HOH A 86 1187 161 HOH HOH . R 9 HOH A 87 1188 163 HOH HOH . R 9 HOH A 88 1189 164 HOH HOH . R 9 HOH A 89 1190 166 HOH HOH . R 9 HOH A 90 1191 168 HOH HOH . R 9 HOH A 91 1192 169 HOH HOH . R 9 HOH A 92 1193 170 HOH HOH . R 9 HOH A 93 1194 171 HOH HOH . R 9 HOH A 94 1195 175 HOH HOH . S 9 HOH B 1 1107 2 HOH HOH . S 9 HOH B 2 1108 3 HOH HOH . S 9 HOH B 3 1109 6 HOH HOH . S 9 HOH B 4 1110 7 HOH HOH . S 9 HOH B 5 1111 8 HOH HOH . S 9 HOH B 6 1112 10 HOH HOH . S 9 HOH B 7 1113 14 HOH HOH . S 9 HOH B 8 1114 16 HOH HOH . S 9 HOH B 9 1115 19 HOH HOH . S 9 HOH B 10 1116 21 HOH HOH . S 9 HOH B 11 1117 25 HOH HOH . S 9 HOH B 12 1118 28 HOH HOH . S 9 HOH B 13 1119 29 HOH HOH . S 9 HOH B 14 1120 31 HOH HOH . S 9 HOH B 15 1121 33 HOH HOH . S 9 HOH B 16 1122 34 HOH HOH . S 9 HOH B 17 1123 35 HOH HOH . S 9 HOH B 18 1124 36 HOH HOH . S 9 HOH B 19 1125 37 HOH HOH . S 9 HOH B 20 1126 38 HOH HOH . S 9 HOH B 21 1127 39 HOH HOH . S 9 HOH B 22 1128 41 HOH HOH . S 9 HOH B 23 1129 42 HOH HOH . S 9 HOH B 24 1130 43 HOH HOH . S 9 HOH B 25 1131 44 HOH HOH . S 9 HOH B 26 1132 45 HOH HOH . S 9 HOH B 27 1133 47 HOH HOH . S 9 HOH B 28 1134 48 HOH HOH . S 9 HOH B 29 1135 50 HOH HOH . S 9 HOH B 30 1136 52 HOH HOH . S 9 HOH B 31 1137 53 HOH HOH . S 9 HOH B 32 1138 57 HOH HOH . S 9 HOH B 33 1139 58 HOH HOH . S 9 HOH B 34 1140 59 HOH HOH . S 9 HOH B 35 1141 61 HOH HOH . S 9 HOH B 36 1142 62 HOH HOH . S 9 HOH B 37 1143 64 HOH HOH . S 9 HOH B 38 1144 68 HOH HOH . S 9 HOH B 39 1145 70 HOH HOH . S 9 HOH B 40 1146 71 HOH HOH . S 9 HOH B 41 1147 72 HOH HOH . S 9 HOH B 42 1148 73 HOH HOH . S 9 HOH B 43 1149 76 HOH HOH . S 9 HOH B 44 1150 77 HOH HOH . S 9 HOH B 45 1151 82 HOH HOH . S 9 HOH B 46 1152 84 HOH HOH . S 9 HOH B 47 1153 86 HOH HOH . S 9 HOH B 48 1154 87 HOH HOH . S 9 HOH B 49 1155 90 HOH HOH . S 9 HOH B 50 1156 92 HOH HOH . S 9 HOH B 51 1157 93 HOH HOH . S 9 HOH B 52 1158 94 HOH HOH . S 9 HOH B 53 1159 98 HOH HOH . S 9 HOH B 54 1160 99 HOH HOH . S 9 HOH B 55 1161 101 HOH HOH . S 9 HOH B 56 1162 102 HOH HOH . S 9 HOH B 57 1163 104 HOH HOH . S 9 HOH B 58 1164 106 HOH HOH . S 9 HOH B 59 1165 109 HOH HOH . S 9 HOH B 60 1166 110 HOH HOH . S 9 HOH B 61 1167 111 HOH HOH . S 9 HOH B 62 1168 116 HOH HOH . S 9 HOH B 63 1169 125 HOH HOH . S 9 HOH B 64 1170 126 HOH HOH . S 9 HOH B 65 1171 128 HOH HOH . S 9 HOH B 66 1172 130 HOH HOH . S 9 HOH B 67 1173 133 HOH HOH . S 9 HOH B 68 1174 137 HOH HOH . S 9 HOH B 69 1175 140 HOH HOH . S 9 HOH B 70 1176 144 HOH HOH . S 9 HOH B 71 1177 145 HOH HOH . S 9 HOH B 72 1178 146 HOH HOH . S 9 HOH B 73 1179 149 HOH HOH . S 9 HOH B 74 1180 150 HOH HOH . S 9 HOH B 75 1181 151 HOH HOH . S 9 HOH B 76 1182 162 HOH HOH . S 9 HOH B 77 1183 165 HOH HOH . S 9 HOH B 78 1184 167 HOH HOH . S 9 HOH B 79 1185 172 HOH HOH . S 9 HOH B 80 1186 173 HOH HOH . S 9 HOH B 81 1187 174 HOH HOH . S 9 HOH B 82 1188 176 HOH HOH . S 9 HOH B 83 1189 177 HOH HOH . S 9 HOH B 84 1190 178 HOH HOH . S 9 HOH B 85 1191 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CHD . . . N 4 39.093 29.196 0.127 1 98.35 ? C1 CHD 1104 B 1 HETATM 2 C C2 CHD . . . N 4 37.796 30.052 -0.08 1 98.61 ? C2 CHD 1104 B 1 HETATM 3 C C3 CHD . . . N 4 37.77 31.211 0.959 1 98.57 ? C3 CHD 1104 B 1 HETATM 4 O O3 CHD . . . N 4 36.555 31.996 0.751 1 98.56 ? O3 CHD 1104 B 1 HETATM 5 C C4 CHD . . . N 4 37.796 30.656 2.41 1 98.4 ? C4 CHD 1104 B 1 HETATM 6 C C5 CHD . . . N 4 39.076 29.804 2.635 1 98.23 ? C5 CHD 1104 B 1 HETATM 7 C C6 CHD . . . N 4 39.199 29.208 4.095 1 98.21 ? C6 CHD 1104 B 1 HETATM 8 C C7 CHD . . . N 4 38.193 28.087 4.396 1 98.31 ? C7 CHD 1104 B 1 HETATM 9 O O7 CHD . . . N 4 36.8 28.563 4.465 1 98.33 ? O7 CHD 1104 B 1 HETATM 10 C C8 CHD . . . N 4 38.357 26.911 3.362 1 98.37 ? C8 CHD 1104 B 1 HETATM 11 C C9 CHD . . . N 4 38.208 27.482 1.906 1 98.27 ? C9 CHD 1104 B 1 HETATM 12 C C10 CHD . . . N 4 39.252 28.656 1.572 1 98.26 ? C10 CHD 1104 B 1 HETATM 13 C C11 CHD . . . N 4 38.344 26.277 0.868 1 98.31 ? C11 CHD 1104 B 1 HETATM 14 C C12 CHD . . . N 4 37.321 25.159 1.171 1 98.59 ? C12 CHD 1104 B 1 HETATM 15 O O12 CHD . . . N 4 35.957 25.732 1.096 1 98.53 ? O12 CHD 1104 B 1 HETATM 16 C C13 CHD . . . N 4 37.457 24.547 2.626 1 98.74 ? C13 CHD 1104 B 1 HETATM 17 C C14 CHD . . . N 4 37.333 25.732 3.616 1 98.58 ? C14 CHD 1104 B 1 HETATM 18 C C15 CHD . . . N 4 37.394 25.034 4.995 1 98.67 ? C15 CHD 1104 B 1 HETATM 19 C C16 CHD . . . N 4 36.512 23.772 4.747 1 98.8 ? C16 CHD 1104 B 1 HETATM 20 C C17 CHD . . . N 4 36.418 23.526 3.153 1 98.93 ? C17 CHD 1104 B 1 HETATM 21 C C18 CHD . . . N 4 38.921 23.947 2.686 1 98.64 ? C18 CHD 1104 B 1 HETATM 22 C C19 CHD . . . N 4 40.764 28.198 1.596 1 98.26 ? C19 CHD 1104 B 1 HETATM 23 C C20 CHD . . . N 4 36.57 21.981 2.86 1 99.22 ? C20 CHD 1104 B 1 HETATM 24 C C21 CHD . . . N 4 36.525 21.643 1.343 1 99.22 ? C21 CHD 1104 B 1 HETATM 25 C C22 CHD . . . N 4 35.416 21.196 3.536 1 99.68 ? C22 CHD 1104 B 1 HETATM 26 C C23 CHD . . . N 4 35.916 19.903 4.273 1 100.26 ? C23 CHD 1104 B 1 HETATM 27 O O25 CHD . . . N 4 34.038 18.772 5.222 1 100.7 ? O25 CHD 1104 B 1 HETATM 28 C C24 CHD . . . N 4 35.049 19.665 5.449 1 100.62 ? C24 CHD 1104 B 1 HETATM 29 O O26 CHD . . . N 4 35.148 20.166 6.554 1 100.7 ? O26 CHD 1104 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #