data_2QD7
#
_model_server_result.job_id            UPFClU41-gRK-7iUWW5bow 
_model_server_result.datetime_utc      '2024-11-28 15:25:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qd7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":801}' 
#
_entry.id    2QD7 
#
_exptl.entry_id    2QD7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2QD7 
_cell.length_a            50.884 
_cell.length_b            58.149 
_cell.length_c            62.106 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QD7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 218 n n 
C1 C2 GOL sing 219 n n 
C1 H11 GOL sing 220 n n 
C1 H12 GOL sing 221 n n 
O1 HO1 GOL sing 222 n n 
C2 O2 GOL sing 223 n n 
C2 C3 GOL sing 224 n n 
C2 H2 GOL sing 225 n n 
O2 HO2 GOL sing 226 n n 
C3 O3 GOL sing 227 n n 
C3 H31 GOL sing 228 n n 
C3 H32 GOL sing 229 n n 
O3 HO3 GOL sing 230 n n 
#
_atom_sites.entry_id                     2QD7 
_atom_sites.fract_transf_matrix[1][1]    0.019653 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 701 701 PO4 PO4 . 
D 3 DMS A 1 901 901 DMS DMS . 
E 3 DMS A 1 902 902 DMS DMS . 
F 4 GOL A 1 802 802 GOL GOL . 
G 2 PO4 B 1 703 703 PO4 PO4 . 
H 5 065 B 1 404 404 065 065 . 
I 4 GOL B 1 801 801 GOL GOL . 
J 6 HOH A 1 903 1001 HOH HOH . 
J 6 HOH A 2 904 1002 HOH HOH . 
J 6 HOH A 3 905 1003 HOH HOH . 
J 6 HOH A 4 906 1005 HOH HOH . 
J 6 HOH A 5 907 1008 HOH HOH . 
J 6 HOH A 6 908 1009 HOH HOH . 
J 6 HOH A 7 909 1012 HOH HOH . 
J 6 HOH A 8 910 1016 HOH HOH . 
J 6 HOH A 9 911 1017 HOH HOH . 
J 6 HOH A 10 912 1018 HOH HOH . 
J 6 HOH A 11 913 1019 HOH HOH . 
J 6 HOH A 12 914 1021 HOH HOH . 
J 6 HOH A 13 915 1023 HOH HOH . 
J 6 HOH A 14 916 1025 HOH HOH . 
J 6 HOH A 15 917 1027 HOH HOH . 
J 6 HOH A 16 918 1028 HOH HOH . 
J 6 HOH A 17 919 1029 HOH HOH . 
J 6 HOH A 18 920 1031 HOH HOH . 
J 6 HOH A 19 921 1032 HOH HOH . 
J 6 HOH A 20 922 1033 HOH HOH . 
J 6 HOH A 21 923 1035 HOH HOH . 
J 6 HOH A 22 924 1036 HOH HOH . 
J 6 HOH A 23 925 1037 HOH HOH . 
J 6 HOH A 24 926 1038 HOH HOH . 
J 6 HOH A 25 927 1042 HOH HOH . 
J 6 HOH A 26 928 1043 HOH HOH . 
J 6 HOH A 27 929 1044 HOH HOH . 
J 6 HOH A 28 930 1045 HOH HOH . 
J 6 HOH A 29 931 1047 HOH HOH . 
J 6 HOH A 30 932 1048 HOH HOH . 
J 6 HOH A 31 933 1058 HOH HOH . 
J 6 HOH A 32 934 1061 HOH HOH . 
J 6 HOH A 33 935 1062 HOH HOH . 
J 6 HOH A 34 936 1068 HOH HOH . 
J 6 HOH A 35 937 1069 HOH HOH . 
J 6 HOH A 36 938 1071 HOH HOH . 
J 6 HOH A 37 939 1075 HOH HOH . 
J 6 HOH A 38 940 1077 HOH HOH . 
J 6 HOH A 39 941 1078 HOH HOH . 
J 6 HOH A 40 942 1079 HOH HOH . 
J 6 HOH A 41 943 1081 HOH HOH . 
J 6 HOH A 42 944 1083 HOH HOH . 
J 6 HOH A 43 945 1087 HOH HOH . 
J 6 HOH A 44 946 1090 HOH HOH . 
J 6 HOH A 45 947 1092 HOH HOH . 
J 6 HOH A 46 948 1093 HOH HOH . 
J 6 HOH A 47 949 1094 HOH HOH . 
J 6 HOH A 48 950 1095 HOH HOH . 
J 6 HOH A 49 951 1096 HOH HOH . 
J 6 HOH A 50 952 1097 HOH HOH . 
J 6 HOH A 51 953 1102 HOH HOH . 
J 6 HOH A 52 954 1106 HOH HOH . 
J 6 HOH A 53 955 1107 HOH HOH . 
J 6 HOH A 54 956 1108 HOH HOH . 
J 6 HOH A 55 957 1109 HOH HOH . 
J 6 HOH A 56 958 1111 HOH HOH . 
J 6 HOH A 57 959 1112 HOH HOH . 
J 6 HOH A 58 960 1113 HOH HOH . 
J 6 HOH A 59 961 1114 HOH HOH . 
J 6 HOH A 60 962 1116 HOH HOH . 
J 6 HOH A 61 963 1117 HOH HOH . 
J 6 HOH A 62 964 1119 HOH HOH . 
J 6 HOH A 63 965 1120 HOH HOH . 
J 6 HOH A 64 966 1122 HOH HOH . 
J 6 HOH A 65 967 1123 HOH HOH . 
J 6 HOH A 66 968 1124 HOH HOH . 
J 6 HOH A 67 969 1125 HOH HOH . 
J 6 HOH A 68 970 1127 HOH HOH . 
J 6 HOH A 69 971 1128 HOH HOH . 
J 6 HOH A 70 972 1129 HOH HOH . 
J 6 HOH A 71 973 1130 HOH HOH . 
J 6 HOH A 72 974 1132 HOH HOH . 
J 6 HOH A 73 975 1133 HOH HOH . 
J 6 HOH A 74 976 1135 HOH HOH . 
J 6 HOH A 75 977 1142 HOH HOH . 
J 6 HOH A 76 978 1147 HOH HOH . 
J 6 HOH A 77 979 1149 HOH HOH . 
J 6 HOH A 78 980 1150 HOH HOH . 
J 6 HOH A 79 981 1151 HOH HOH . 
J 6 HOH A 80 982 1154 HOH HOH . 
J 6 HOH A 81 983 1156 HOH HOH . 
J 6 HOH A 82 984 1160 HOH HOH . 
J 6 HOH A 83 985 1161 HOH HOH . 
J 6 HOH A 84 986 1165 HOH HOH . 
J 6 HOH A 85 987 1167 HOH HOH . 
J 6 HOH A 86 988 1168 HOH HOH . 
J 6 HOH A 87 989 1169 HOH HOH . 
J 6 HOH A 88 990 1170 HOH HOH . 
J 6 HOH A 89 991 1171 HOH HOH . 
J 6 HOH A 90 992 1172 HOH HOH . 
J 6 HOH A 91 993 1173 HOH HOH . 
J 6 HOH A 92 994 1174 HOH HOH . 
J 6 HOH A 93 995 1175 HOH HOH . 
J 6 HOH A 94 996 1176 HOH HOH . 
J 6 HOH A 95 997 1177 HOH HOH . 
J 6 HOH A 96 998 1181 HOH HOH . 
J 6 HOH A 97 999 1182 HOH HOH . 
J 6 HOH A 98 1000 1183 HOH HOH . 
J 6 HOH A 99 1001 1184 HOH HOH . 
J 6 HOH A 100 1002 1185 HOH HOH . 
J 6 HOH A 101 1003 1186 HOH HOH . 
J 6 HOH A 102 1004 1187 HOH HOH . 
J 6 HOH A 103 1005 1189 HOH HOH . 
J 6 HOH A 104 1006 1190 HOH HOH . 
J 6 HOH A 105 1007 1191 HOH HOH . 
J 6 HOH A 106 1008 1192 HOH HOH . 
J 6 HOH A 107 1009 1193 HOH HOH . 
J 6 HOH A 108 1010 1194 HOH HOH . 
J 6 HOH A 109 1011 1197 HOH HOH . 
J 6 HOH A 110 1012 1201 HOH HOH . 
J 6 HOH A 111 1013 1202 HOH HOH . 
J 6 HOH A 112 1014 1203 HOH HOH . 
J 6 HOH A 113 1015 1205 HOH HOH . 
J 6 HOH A 114 1016 1208 HOH HOH . 
J 6 HOH A 115 1017 1210 HOH HOH . 
J 6 HOH A 116 1018 1214 HOH HOH . 
J 6 HOH A 117 1019 1217 HOH HOH . 
J 6 HOH A 118 1020 1220 HOH HOH . 
J 6 HOH A 119 1021 1221 HOH HOH . 
K 6 HOH B 1 802 1004 HOH HOH . 
K 6 HOH B 2 803 1006 HOH HOH . 
K 6 HOH B 3 804 1007 HOH HOH . 
K 6 HOH B 4 805 1010 HOH HOH . 
K 6 HOH B 5 806 1011 HOH HOH . 
K 6 HOH B 6 807 1013 HOH HOH . 
K 6 HOH B 7 808 1014 HOH HOH . 
K 6 HOH B 8 809 1015 HOH HOH . 
K 6 HOH B 9 810 1020 HOH HOH . 
K 6 HOH B 10 811 1022 HOH HOH . 
K 6 HOH B 11 812 1024 HOH HOH . 
K 6 HOH B 12 813 1026 HOH HOH . 
K 6 HOH B 13 814 1030 HOH HOH . 
K 6 HOH B 14 815 1034 HOH HOH . 
K 6 HOH B 15 816 1039 HOH HOH . 
K 6 HOH B 16 817 1040 HOH HOH . 
K 6 HOH B 17 818 1041 HOH HOH . 
K 6 HOH B 18 819 1046 HOH HOH . 
K 6 HOH B 19 820 1049 HOH HOH . 
K 6 HOH B 20 821 1050 HOH HOH . 
K 6 HOH B 21 822 1051 HOH HOH . 
K 6 HOH B 22 823 1052 HOH HOH . 
K 6 HOH B 23 824 1053 HOH HOH . 
K 6 HOH B 24 825 1054 HOH HOH . 
K 6 HOH B 25 826 1055 HOH HOH . 
K 6 HOH B 26 827 1056 HOH HOH . 
K 6 HOH B 27 828 1057 HOH HOH . 
K 6 HOH B 28 829 1059 HOH HOH . 
K 6 HOH B 29 830 1060 HOH HOH . 
K 6 HOH B 30 831 1063 HOH HOH . 
K 6 HOH B 31 832 1064 HOH HOH . 
K 6 HOH B 32 833 1065 HOH HOH . 
K 6 HOH B 33 834 1066 HOH HOH . 
K 6 HOH B 34 835 1067 HOH HOH . 
K 6 HOH B 35 836 1070 HOH HOH . 
K 6 HOH B 36 837 1072 HOH HOH . 
K 6 HOH B 37 838 1073 HOH HOH . 
K 6 HOH B 38 839 1074 HOH HOH . 
K 6 HOH B 39 840 1076 HOH HOH . 
K 6 HOH B 40 841 1080 HOH HOH . 
K 6 HOH B 41 842 1082 HOH HOH . 
K 6 HOH B 42 843 1084 HOH HOH . 
K 6 HOH B 43 844 1085 HOH HOH . 
K 6 HOH B 44 845 1086 HOH HOH . 
K 6 HOH B 45 846 1088 HOH HOH . 
K 6 HOH B 46 847 1089 HOH HOH . 
K 6 HOH B 47 848 1091 HOH HOH . 
K 6 HOH B 48 849 1098 HOH HOH . 
K 6 HOH B 49 850 1099 HOH HOH . 
K 6 HOH B 50 851 1100 HOH HOH . 
K 6 HOH B 51 852 1101 HOH HOH . 
K 6 HOH B 52 853 1103 HOH HOH . 
K 6 HOH B 53 854 1104 HOH HOH . 
K 6 HOH B 54 855 1105 HOH HOH . 
K 6 HOH B 55 856 1110 HOH HOH . 
K 6 HOH B 56 857 1115 HOH HOH . 
K 6 HOH B 57 858 1118 HOH HOH . 
K 6 HOH B 58 859 1121 HOH HOH . 
K 6 HOH B 59 860 1126 HOH HOH . 
K 6 HOH B 60 861 1131 HOH HOH . 
K 6 HOH B 61 862 1134 HOH HOH . 
K 6 HOH B 62 863 1136 HOH HOH . 
K 6 HOH B 63 864 1137 HOH HOH . 
K 6 HOH B 64 865 1138 HOH HOH . 
K 6 HOH B 65 866 1139 HOH HOH . 
K 6 HOH B 66 867 1140 HOH HOH . 
K 6 HOH B 67 868 1141 HOH HOH . 
K 6 HOH B 68 869 1143 HOH HOH . 
K 6 HOH B 69 870 1144 HOH HOH . 
K 6 HOH B 70 871 1145 HOH HOH . 
K 6 HOH B 71 872 1146 HOH HOH . 
K 6 HOH B 72 873 1148 HOH HOH . 
K 6 HOH B 73 874 1152 HOH HOH . 
K 6 HOH B 74 875 1153 HOH HOH . 
K 6 HOH B 75 876 1155 HOH HOH . 
K 6 HOH B 76 877 1157 HOH HOH . 
K 6 HOH B 77 878 1158 HOH HOH . 
K 6 HOH B 78 879 1159 HOH HOH . 
K 6 HOH B 79 880 1162 HOH HOH . 
K 6 HOH B 80 881 1163 HOH HOH . 
K 6 HOH B 81 882 1164 HOH HOH . 
K 6 HOH B 82 883 1166 HOH HOH . 
K 6 HOH B 83 884 1178 HOH HOH . 
K 6 HOH B 84 885 1179 HOH HOH . 
K 6 HOH B 85 886 1180 HOH HOH . 
K 6 HOH B 86 887 1188 HOH HOH . 
K 6 HOH B 87 888 1195 HOH HOH . 
K 6 HOH B 88 889 1196 HOH HOH . 
K 6 HOH B 89 890 1198 HOH HOH . 
K 6 HOH B 90 891 1199 HOH HOH . 
K 6 HOH B 91 892 1200 HOH HOH . 
K 6 HOH B 92 893 1204 HOH HOH . 
K 6 HOH B 93 894 1206 HOH HOH . 
K 6 HOH B 94 895 1207 HOH HOH . 
K 6 HOH B 95 896 1209 HOH HOH . 
K 6 HOH B 96 897 1211 HOH HOH . 
K 6 HOH B 97 898 1212 HOH HOH . 
K 6 HOH B 98 899 1213 HOH HOH . 
K 6 HOH B 99 900 1215 HOH HOH . 
K 6 HOH B 100 901 1216 HOH HOH . 
K 6 HOH B 101 902 1218 HOH HOH . 
K 6 HOH B 102 903 1219 HOH HOH . 
K 6 HOH B 103 904 1222 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 4 32.706 29.201 31.314 0.5 12.17 ? C1 GOL 801 B 1 
HETATM 2 O O1 GOL . . . I 4 33.39 29.886 30.269 0.5 12.62 ? O1 GOL 801 B 1 
HETATM 3 C C2 GOL . . . I 4 32.052 30.223 32.239 0.5 12.14 ? C2 GOL 801 B 1 
HETATM 4 O O2 GOL . . . I 4 31.244 31.1 31.459 0.5 13.87 ? O2 GOL 801 B 1 
HETATM 5 C C3 GOL . . . I 4 33.074 31 33.051 0.5 10.67 ? C3 GOL 801 B 1 
HETATM 6 O O3 GOL . . . I 4 32.541 31.783 34.08 0.5 12.21 ? O3 GOL 801 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#