data_2QD8 # _model_server_result.job_id Rjf4E7Io9GbaN94jUCCXwg _model_server_result.datetime_utc '2024-11-08 10:32:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2QD8 # _exptl.entry_id 2QD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QD8 _cell.length_a 58.423 _cell.length_b 86.182 _cell.length_c 45.986 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 A ASP 60 1_555 C NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc2 C NA NA . A NA 500 1_555 I O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 C NA NA . A NA 500 1_555 I O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 C NA NA . A NA 500 1_555 I O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc5 C NA NA . A NA 500 1_555 I O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc6 C NA NA . A NA 500 1_555 I O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2QD8 _atom_sites.fract_transf_matrix[1][1] 0.017117 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 500 500 NA NA . D 3 CL A 1 502 502 CL CL . E 3 CL B 1 501 501 CL CL . F 4 ACT B 1 802 802 ACT ACT . G 4 ACT B 1 803 803 ACT ACT . H 5 065 B 1 404 404 065 065 . I 6 HOH A 1 503 1002 HOH HOH . I 6 HOH A 2 504 1005 HOH HOH . I 6 HOH A 3 505 1007 HOH HOH . I 6 HOH A 4 506 1012 HOH HOH . I 6 HOH A 5 507 1013 HOH HOH . I 6 HOH A 6 508 1015 HOH HOH . I 6 HOH A 7 509 1016 HOH HOH . I 6 HOH A 8 510 1020 HOH HOH . I 6 HOH A 9 511 1025 HOH HOH . I 6 HOH A 10 512 1026 HOH HOH . I 6 HOH A 11 513 1029 HOH HOH . I 6 HOH A 12 514 1031 HOH HOH . I 6 HOH A 13 515 1033 HOH HOH . I 6 HOH A 14 516 1036 HOH HOH . I 6 HOH A 15 517 1037 HOH HOH . I 6 HOH A 16 518 1039 HOH HOH . I 6 HOH A 17 519 1040 HOH HOH . I 6 HOH A 18 520 1041 HOH HOH . I 6 HOH A 19 521 1043 HOH HOH . I 6 HOH A 20 522 1046 HOH HOH . I 6 HOH A 21 523 1050 HOH HOH . I 6 HOH A 22 524 1053 HOH HOH . I 6 HOH A 23 525 1054 HOH HOH . I 6 HOH A 24 526 1056 HOH HOH . I 6 HOH A 25 527 1057 HOH HOH . I 6 HOH A 26 528 1063 HOH HOH . I 6 HOH A 27 529 1064 HOH HOH . I 6 HOH A 28 530 1065 HOH HOH . I 6 HOH A 29 531 1068 HOH HOH . I 6 HOH A 30 532 1069 HOH HOH . I 6 HOH A 31 533 1070 HOH HOH . I 6 HOH A 32 534 1077 HOH HOH . I 6 HOH A 33 535 1078 HOH HOH . I 6 HOH A 34 536 1079 HOH HOH . I 6 HOH A 35 537 1080 HOH HOH . I 6 HOH A 36 538 1084 HOH HOH . I 6 HOH A 37 539 1088 HOH HOH . I 6 HOH A 38 540 1089 HOH HOH . I 6 HOH A 39 541 1091 HOH HOH . I 6 HOH A 40 542 1092 HOH HOH . I 6 HOH A 41 543 1094 HOH HOH . I 6 HOH A 42 544 1096 HOH HOH . I 6 HOH A 43 545 1103 HOH HOH . I 6 HOH A 44 546 1108 HOH HOH . I 6 HOH A 45 547 1110 HOH HOH . I 6 HOH A 46 548 1111 HOH HOH . I 6 HOH A 47 549 1117 HOH HOH . I 6 HOH A 48 550 1118 HOH HOH . I 6 HOH A 49 551 1119 HOH HOH . I 6 HOH A 50 552 1121 HOH HOH . I 6 HOH A 51 553 1123 HOH HOH . I 6 HOH A 52 554 1124 HOH HOH . I 6 HOH A 53 555 1125 HOH HOH . I 6 HOH A 54 556 1127 HOH HOH . I 6 HOH A 55 557 1132 HOH HOH . I 6 HOH A 56 558 1133 HOH HOH . I 6 HOH A 57 559 1134 HOH HOH . I 6 HOH A 58 560 1135 HOH HOH . I 6 HOH A 59 561 1136 HOH HOH . I 6 HOH A 60 562 1140 HOH HOH . I 6 HOH A 61 563 1141 HOH HOH . I 6 HOH A 62 564 1142 HOH HOH . I 6 HOH A 63 565 1143 HOH HOH . I 6 HOH A 64 566 1144 HOH HOH . I 6 HOH A 65 567 1145 HOH HOH . I 6 HOH A 66 568 1146 HOH HOH . I 6 HOH A 67 569 1147 HOH HOH . I 6 HOH A 68 570 1148 HOH HOH . I 6 HOH A 69 571 1149 HOH HOH . I 6 HOH A 70 572 1152 HOH HOH . I 6 HOH A 71 573 1154 HOH HOH . I 6 HOH A 72 574 1155 HOH HOH . I 6 HOH A 73 575 1157 HOH HOH . I 6 HOH A 74 576 1163 HOH HOH . I 6 HOH A 75 577 1166 HOH HOH . I 6 HOH A 76 578 1167 HOH HOH . I 6 HOH A 77 579 1168 HOH HOH . I 6 HOH A 78 580 1172 HOH HOH . I 6 HOH A 79 581 1174 HOH HOH . I 6 HOH A 80 582 1178 HOH HOH . I 6 HOH A 81 583 1180 HOH HOH . I 6 HOH A 82 584 1182 HOH HOH . I 6 HOH A 83 585 1185 HOH HOH . I 6 HOH A 84 586 1187 HOH HOH . I 6 HOH A 85 587 1188 HOH HOH . I 6 HOH A 86 588 1189 HOH HOH . I 6 HOH A 87 589 1192 HOH HOH . I 6 HOH A 88 590 1193 HOH HOH . I 6 HOH A 89 591 1195 HOH HOH . I 6 HOH A 90 592 1198 HOH HOH . I 6 HOH A 91 593 1199 HOH HOH . I 6 HOH A 92 594 1200 HOH HOH . I 6 HOH A 93 595 1201 HOH HOH . I 6 HOH A 94 596 1203 HOH HOH . I 6 HOH A 95 597 1206 HOH HOH . I 6 HOH A 96 598 1208 HOH HOH . I 6 HOH A 97 599 1211 HOH HOH . I 6 HOH A 98 600 1214 HOH HOH . I 6 HOH A 99 601 1216 HOH HOH . I 6 HOH A 100 602 1221 HOH HOH . J 6 HOH B 1 804 1001 HOH HOH . J 6 HOH B 2 805 1003 HOH HOH . J 6 HOH B 3 806 1004 HOH HOH . J 6 HOH B 4 807 1006 HOH HOH . J 6 HOH B 5 808 1008 HOH HOH . J 6 HOH B 6 809 1009 HOH HOH . J 6 HOH B 7 810 1010 HOH HOH . J 6 HOH B 8 811 1011 HOH HOH . J 6 HOH B 9 812 1014 HOH HOH . J 6 HOH B 10 813 1017 HOH HOH . J 6 HOH B 11 814 1018 HOH HOH . J 6 HOH B 12 815 1019 HOH HOH . J 6 HOH B 13 816 1021 HOH HOH . J 6 HOH B 14 817 1022 HOH HOH . J 6 HOH B 15 818 1023 HOH HOH . J 6 HOH B 16 819 1024 HOH HOH . J 6 HOH B 17 820 1027 HOH HOH . J 6 HOH B 18 821 1028 HOH HOH . J 6 HOH B 19 822 1030 HOH HOH . J 6 HOH B 20 823 1032 HOH HOH . J 6 HOH B 21 824 1034 HOH HOH . J 6 HOH B 22 825 1035 HOH HOH . J 6 HOH B 23 826 1038 HOH HOH . J 6 HOH B 24 827 1042 HOH HOH . J 6 HOH B 25 828 1044 HOH HOH . J 6 HOH B 26 829 1045 HOH HOH . J 6 HOH B 27 830 1047 HOH HOH . J 6 HOH B 28 831 1048 HOH HOH . J 6 HOH B 29 832 1049 HOH HOH . J 6 HOH B 30 833 1051 HOH HOH . J 6 HOH B 31 834 1052 HOH HOH . J 6 HOH B 32 835 1055 HOH HOH . J 6 HOH B 33 836 1058 HOH HOH . J 6 HOH B 34 837 1059 HOH HOH . J 6 HOH B 35 838 1060 HOH HOH . J 6 HOH B 36 839 1061 HOH HOH . J 6 HOH B 37 840 1062 HOH HOH . J 6 HOH B 38 841 1066 HOH HOH . J 6 HOH B 39 842 1067 HOH HOH . J 6 HOH B 40 843 1071 HOH HOH . J 6 HOH B 41 844 1072 HOH HOH . J 6 HOH B 42 845 1073 HOH HOH . J 6 HOH B 43 846 1074 HOH HOH . J 6 HOH B 44 847 1075 HOH HOH . J 6 HOH B 45 848 1076 HOH HOH . J 6 HOH B 46 849 1081 HOH HOH . J 6 HOH B 47 850 1082 HOH HOH . J 6 HOH B 48 851 1083 HOH HOH . J 6 HOH B 49 852 1085 HOH HOH . J 6 HOH B 50 853 1086 HOH HOH . J 6 HOH B 51 854 1087 HOH HOH . J 6 HOH B 52 855 1090 HOH HOH . J 6 HOH B 53 856 1093 HOH HOH . J 6 HOH B 54 857 1095 HOH HOH . J 6 HOH B 55 858 1097 HOH HOH . J 6 HOH B 56 859 1098 HOH HOH . J 6 HOH B 57 860 1099 HOH HOH . J 6 HOH B 58 861 1100 HOH HOH . J 6 HOH B 59 862 1101 HOH HOH . J 6 HOH B 60 863 1102 HOH HOH . J 6 HOH B 61 864 1104 HOH HOH . J 6 HOH B 62 865 1105 HOH HOH . J 6 HOH B 63 866 1106 HOH HOH . J 6 HOH B 64 867 1107 HOH HOH . J 6 HOH B 65 868 1109 HOH HOH . J 6 HOH B 66 869 1112 HOH HOH . J 6 HOH B 67 870 1113 HOH HOH . J 6 HOH B 68 871 1114 HOH HOH . J 6 HOH B 69 872 1115 HOH HOH . J 6 HOH B 70 873 1116 HOH HOH . J 6 HOH B 71 874 1120 HOH HOH . J 6 HOH B 72 875 1122 HOH HOH . J 6 HOH B 73 876 1126 HOH HOH . J 6 HOH B 74 877 1128 HOH HOH . J 6 HOH B 75 878 1129 HOH HOH . J 6 HOH B 76 879 1130 HOH HOH . J 6 HOH B 77 880 1131 HOH HOH . J 6 HOH B 78 881 1137 HOH HOH . J 6 HOH B 79 882 1138 HOH HOH . J 6 HOH B 80 883 1139 HOH HOH . J 6 HOH B 81 884 1150 HOH HOH . J 6 HOH B 82 885 1151 HOH HOH . J 6 HOH B 83 886 1153 HOH HOH . J 6 HOH B 84 887 1156 HOH HOH . J 6 HOH B 85 888 1158 HOH HOH . J 6 HOH B 86 889 1159 HOH HOH . J 6 HOH B 87 890 1160 HOH HOH . J 6 HOH B 88 891 1161 HOH HOH . J 6 HOH B 89 892 1162 HOH HOH . J 6 HOH B 90 893 1164 HOH HOH . J 6 HOH B 91 894 1165 HOH HOH . J 6 HOH B 92 895 1169 HOH HOH . J 6 HOH B 93 896 1170 HOH HOH . J 6 HOH B 94 897 1171 HOH HOH . J 6 HOH B 95 898 1173 HOH HOH . J 6 HOH B 96 899 1175 HOH HOH . J 6 HOH B 97 900 1176 HOH HOH . J 6 HOH B 98 901 1177 HOH HOH . J 6 HOH B 99 902 1179 HOH HOH . J 6 HOH B 100 903 1181 HOH HOH . J 6 HOH B 101 904 1183 HOH HOH . J 6 HOH B 102 905 1184 HOH HOH . J 6 HOH B 103 906 1186 HOH HOH . J 6 HOH B 104 907 1190 HOH HOH . J 6 HOH B 105 908 1191 HOH HOH . J 6 HOH B 106 909 1194 HOH HOH . J 6 HOH B 107 910 1196 HOH HOH . J 6 HOH B 108 911 1197 HOH HOH . J 6 HOH B 109 912 1202 HOH HOH . J 6 HOH B 110 913 1204 HOH HOH . J 6 HOH B 111 914 1205 HOH HOH . J 6 HOH B 112 915 1207 HOH HOH . J 6 HOH B 113 916 1209 HOH HOH . J 6 HOH B 114 917 1210 HOH HOH . J 6 HOH B 115 918 1212 HOH HOH . J 6 HOH B 116 919 1213 HOH HOH . J 6 HOH B 117 920 1215 HOH HOH . J 6 HOH B 118 921 1217 HOH HOH . J 6 HOH B 119 922 1218 HOH HOH . J 6 HOH B 120 923 1219 HOH HOH . J 6 HOH B 121 924 1220 HOH HOH . J 6 HOH B 122 925 1222 HOH HOH . J 6 HOH B 123 926 1223 HOH HOH . J 6 HOH B 124 927 1224 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.201 _atom_site.Cartn_y 39.863 _atom_site.Cartn_z 1.277 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #