data_2QD9 # _model_server_result.job_id 0Brca6fKuKB3DpuZlmDfHw _model_server_result.datetime_utc '2024-11-26 17:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":361}' # _entry.id 2QD9 # _exptl.entry_id 2QD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 550.513 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[5-[[3-[2,4-bis(fluoranyl)phenyl]-6,8-dihydro-5~{H}-imidazo[1,5-a]pyrazin-7-yl]carbonyl]-6-methoxy-1~{H}-pyrrolo[2,3-b]pyridin-3-yl]-2-[(3~{R})-3-oxidanylpyrrolidin-1-yl]ethane-1,2-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QD9 _cell.length_a 65.65 _cell.length_b 74.36 _cell.length_c 78.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H24 F2 N6 O5' _chem_comp.formula_weight 550.513 _chem_comp.id LGF _chem_comp.mon_nstd_flag . _chem_comp.name 1-[5-[[3-[2,4-bis(fluoranyl)phenyl]-6,8-dihydro-5~{H}-imidazo[1,5-a]pyrazin-7-yl]carbonyl]-6-methoxy-1~{H}-pyrrolo[2,3-b]pyridin-3-yl]-2-[(3~{R})-3-oxidanylpyrrolidin-1-yl]ethane-1,2-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,11-DIFLUORO-6,8,13-TRIMETHYL-8H-QUINO[4,3,2-KL]ACRIDIN-13-IUM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F33 C13 LGF sing 194 n n C13 C14 LGF doub 195 n y C13 C12 LGF sing 196 n y C14 C15 LGF sing 197 n y C12 C11 LGF doub 198 n y C15 C10 LGF doub 199 n y C11 C10 LGF sing 200 n y C11 F32 LGF sing 201 n n C10 C9 LGF sing 202 n n C9 N8 LGF doub 203 n y C9 N5 LGF sing 204 n y N8 C7 LGF sing 205 n y C1 N5 LGF sing 206 n n C1 C2 LGF sing 207 n n N5 C6 LGF sing 208 n y C2 N3 LGF sing 209 n n C7 C6 LGF doub 210 n y C6 C4 LGF sing 211 n n N3 C4 LGF sing 212 n n N3 C16 LGF sing 213 n n O17 C16 LGF doub 214 n n C16 C18 LGF sing 215 n n O34 C35 LGF sing 216 n n O34 C21 LGF sing 217 n n C18 C21 LGF doub 218 n y C18 C19 LGF sing 219 n y C21 N20 LGF sing 220 n y C19 C23 LGF doub 221 n y N20 C22 LGF doub 222 n y C22 C23 LGF sing 223 n y C22 N26 LGF sing 224 n y C23 C24 LGF sing 225 n y O28 C27 LGF doub 226 n n N26 C25 LGF sing 227 n y C24 C27 LGF sing 228 n n C24 C25 LGF doub 229 n y C27 C29 LGF sing 230 n n O40 C37 LGF sing 231 n n C29 O31 LGF doub 232 n n C29 N30 LGF sing 233 n n N30 C36 LGF sing 234 n n N30 C39 LGF sing 235 n n C37 C36 LGF sing 236 n n C37 C38 LGF sing 237 n n C39 C38 LGF sing 238 n n C15 H1 LGF sing 239 n n C19 H2 LGF sing 240 n n C12 H3 LGF sing 241 n n C14 H4 LGF sing 242 n n C7 H5 LGF sing 243 n n C4 H6 LGF sing 244 n n C4 H7 LGF sing 245 n n C2 H8 LGF sing 246 n n C2 H9 LGF sing 247 n n C1 H10 LGF sing 248 n n C1 H11 LGF sing 249 n n N26 H12 LGF sing 250 n n C25 H13 LGF sing 251 n n C35 H14 LGF sing 252 n n C35 H15 LGF sing 253 n n C35 H16 LGF sing 254 n n C36 H17 LGF sing 255 n n C36 H18 LGF sing 256 n n C37 H19 LGF sing 257 n n O40 H20 LGF sing 258 n n C38 H21 LGF sing 259 n n C38 H22 LGF sing 260 n n C39 H23 LGF sing 261 n n C39 H24 LGF sing 262 n n # _atom_sites.entry_id 2QD9 _atom_sites.fract_transf_matrix[1][1] 0.015232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LGF A 1 361 1 LGF LG1 . C 3 HOH A 1 362 1 HOH HOH . C 3 HOH A 2 363 2 HOH HOH . C 3 HOH A 3 364 3 HOH HOH . C 3 HOH A 4 365 4 HOH HOH . C 3 HOH A 5 366 5 HOH HOH . C 3 HOH A 6 367 6 HOH HOH . C 3 HOH A 7 368 7 HOH HOH . C 3 HOH A 8 369 8 HOH HOH . C 3 HOH A 9 370 9 HOH HOH . C 3 HOH A 10 371 10 HOH HOH . C 3 HOH A 11 372 11 HOH HOH . C 3 HOH A 12 373 12 HOH HOH . C 3 HOH A 13 374 13 HOH HOH . C 3 HOH A 14 375 14 HOH HOH . C 3 HOH A 15 376 15 HOH HOH . C 3 HOH A 16 377 16 HOH HOH . C 3 HOH A 17 378 17 HOH HOH . C 3 HOH A 18 379 18 HOH HOH . C 3 HOH A 19 380 19 HOH HOH . C 3 HOH A 20 381 20 HOH HOH . C 3 HOH A 21 382 21 HOH HOH . C 3 HOH A 22 383 22 HOH HOH . C 3 HOH A 23 384 23 HOH HOH . C 3 HOH A 24 385 24 HOH HOH . C 3 HOH A 25 386 25 HOH HOH . C 3 HOH A 26 387 26 HOH HOH . C 3 HOH A 27 388 27 HOH HOH . C 3 HOH A 28 389 28 HOH HOH . C 3 HOH A 29 390 29 HOH HOH . C 3 HOH A 30 391 30 HOH HOH . C 3 HOH A 31 392 31 HOH HOH . C 3 HOH A 32 393 32 HOH HOH . C 3 HOH A 33 394 33 HOH HOH . C 3 HOH A 34 395 34 HOH HOH . C 3 HOH A 35 396 35 HOH HOH . C 3 HOH A 36 397 36 HOH HOH . C 3 HOH A 37 398 37 HOH HOH . C 3 HOH A 38 399 38 HOH HOH . C 3 HOH A 39 400 39 HOH HOH . C 3 HOH A 40 401 40 HOH HOH . C 3 HOH A 41 402 41 HOH HOH . C 3 HOH A 42 403 42 HOH HOH . C 3 HOH A 43 404 43 HOH HOH . C 3 HOH A 44 405 44 HOH HOH . C 3 HOH A 45 406 45 HOH HOH . C 3 HOH A 46 407 46 HOH HOH . C 3 HOH A 47 408 47 HOH HOH . C 3 HOH A 48 409 48 HOH HOH . C 3 HOH A 49 410 49 HOH HOH . C 3 HOH A 50 411 50 HOH HOH . C 3 HOH A 51 412 51 HOH HOH . C 3 HOH A 52 413 52 HOH HOH . C 3 HOH A 53 414 53 HOH HOH . C 3 HOH A 54 415 54 HOH HOH . C 3 HOH A 55 416 55 HOH HOH . C 3 HOH A 56 417 56 HOH HOH . C 3 HOH A 57 418 57 HOH HOH . C 3 HOH A 58 419 58 HOH HOH . C 3 HOH A 59 420 59 HOH HOH . C 3 HOH A 60 421 60 HOH HOH . C 3 HOH A 61 422 61 HOH HOH . C 3 HOH A 62 423 62 HOH HOH . C 3 HOH A 63 424 63 HOH HOH . C 3 HOH A 64 425 64 HOH HOH . C 3 HOH A 65 426 65 HOH HOH . C 3 HOH A 66 427 66 HOH HOH . C 3 HOH A 67 428 67 HOH HOH . C 3 HOH A 68 429 68 HOH HOH . C 3 HOH A 69 430 69 HOH HOH . C 3 HOH A 70 431 70 HOH HOH . C 3 HOH A 71 432 71 HOH HOH . C 3 HOH A 72 433 72 HOH HOH . C 3 HOH A 73 434 73 HOH HOH . C 3 HOH A 74 435 74 HOH HOH . C 3 HOH A 75 436 75 HOH HOH . C 3 HOH A 76 437 76 HOH HOH . C 3 HOH A 77 438 77 HOH HOH . C 3 HOH A 78 439 78 HOH HOH . C 3 HOH A 79 440 79 HOH HOH . C 3 HOH A 80 441 80 HOH HOH . C 3 HOH A 81 442 81 HOH HOH . C 3 HOH A 82 443 82 HOH HOH . C 3 HOH A 83 444 83 HOH HOH . C 3 HOH A 84 445 84 HOH HOH . C 3 HOH A 85 446 85 HOH HOH . C 3 HOH A 86 447 86 HOH HOH . C 3 HOH A 87 448 87 HOH HOH . C 3 HOH A 88 449 88 HOH HOH . C 3 HOH A 89 450 89 HOH HOH . C 3 HOH A 90 451 90 HOH HOH . C 3 HOH A 91 452 92 HOH HOH . C 3 HOH A 92 453 93 HOH HOH . C 3 HOH A 93 454 94 HOH HOH . C 3 HOH A 94 455 95 HOH HOH . C 3 HOH A 95 456 96 HOH HOH . C 3 HOH A 96 457 97 HOH HOH . C 3 HOH A 97 458 98 HOH HOH . C 3 HOH A 98 459 99 HOH HOH . C 3 HOH A 99 460 100 HOH HOH . C 3 HOH A 100 461 101 HOH HOH . C 3 HOH A 101 462 102 HOH HOH . C 3 HOH A 102 463 103 HOH HOH . C 3 HOH A 103 464 104 HOH HOH . C 3 HOH A 104 465 105 HOH HOH . C 3 HOH A 105 466 106 HOH HOH . C 3 HOH A 106 467 107 HOH HOH . C 3 HOH A 107 468 108 HOH HOH . C 3 HOH A 108 469 109 HOH HOH . C 3 HOH A 109 470 110 HOH HOH . C 3 HOH A 110 471 111 HOH HOH . C 3 HOH A 111 472 112 HOH HOH . C 3 HOH A 112 473 113 HOH HOH . C 3 HOH A 113 474 114 HOH HOH . C 3 HOH A 114 475 115 HOH HOH . C 3 HOH A 115 476 116 HOH HOH . C 3 HOH A 116 477 117 HOH HOH . C 3 HOH A 117 478 118 HOH HOH . C 3 HOH A 118 479 119 HOH HOH . C 3 HOH A 119 480 120 HOH HOH . C 3 HOH A 120 481 121 HOH HOH . C 3 HOH A 121 482 122 HOH HOH . C 3 HOH A 122 483 123 HOH HOH . C 3 HOH A 123 484 124 HOH HOH . C 3 HOH A 124 485 125 HOH HOH . C 3 HOH A 125 486 126 HOH HOH . C 3 HOH A 126 487 127 HOH HOH . C 3 HOH A 127 488 128 HOH HOH . C 3 HOH A 128 489 129 HOH HOH . C 3 HOH A 129 490 130 HOH HOH . C 3 HOH A 130 491 131 HOH HOH . C 3 HOH A 131 492 132 HOH HOH . C 3 HOH A 132 493 133 HOH HOH . C 3 HOH A 133 494 134 HOH HOH . C 3 HOH A 134 495 135 HOH HOH . C 3 HOH A 135 496 136 HOH HOH . C 3 HOH A 136 497 137 HOH HOH . C 3 HOH A 137 498 138 HOH HOH . C 3 HOH A 138 499 139 HOH HOH . C 3 HOH A 139 500 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 LGF . . . B 2 -5.197 0.811 16.066 1 28.22 ? C13 LGF 361 A 1 HETATM 2 C C18 LGF . . . B 2 -1.139 -1.672 24.854 1 28.44 ? C18 LGF 361 A 1 HETATM 3 C C16 LGF . . . B 2 -1.631 -2.206 23.488 1 25.12 ? C16 LGF 361 A 1 HETATM 4 C C15 LGF . . . B 2 -3.199 1.707 17.191 1 20.4 ? C15 LGF 361 A 1 HETATM 5 C C19 LGF . . . B 2 -1.951 -1.819 25.919 1 35.79 ? C19 LGF 361 A 1 HETATM 6 C C21 LGF . . . B 2 0.186 -0.919 24.969 1 31.37 ? C21 LGF 361 A 1 HETATM 7 C C22 LGF . . . B 2 -0.231 -0.632 27.124 1 35.03 ? C22 LGF 361 A 1 HETATM 8 C C23 LGF . . . B 2 -1.37 -1.265 27.132 1 36.23 ? C23 LGF 361 A 1 HETATM 9 C C24 LGF . . . B 2 -1.924 -1.256 28.506 1 40.9 ? C24 LGF 361 A 1 HETATM 10 C C11 LGF . . . B 2 -5.153 0.871 18.368 1 19.54 ? C11 LGF 361 A 1 HETATM 11 C C12 LGF . . . B 2 -5.863 0.536 17.174 1 22.76 ? C12 LGF 361 A 1 HETATM 12 C C27 LGF . . . B 2 -3.187 -1.873 29.011 1 46.17 ? C27 LGF 361 A 1 HETATM 13 F F33 LGF . . . B 2 -5.736 0.379 14.951 1 27.89 ? F33 LGF 361 A 1 HETATM 14 C C14 LGF . . . B 2 -3.9 1.395 16.067 1 23.21 ? C14 LGF 361 A 1 HETATM 15 F F32 LGF . . . B 2 -5.791 0.511 19.524 1 21.46 ? F32 LGF 361 A 1 HETATM 16 C C10 LGF . . . B 2 -3.876 1.36 18.425 1 17.44 ? C10 LGF 361 A 1 HETATM 17 C C9 LGF . . . B 2 -3.222 1.584 19.761 1 20.7 ? C9 LGF 361 A 1 HETATM 18 N N8 LGF . . . B 2 -2.701 2.67 20.216 1 23.41 ? N8 LGF 361 A 1 HETATM 19 N N5 LGF . . . B 2 -2.891 0.515 20.616 1 23.12 ? N5 LGF 361 A 1 HETATM 20 C C6 LGF . . . B 2 -2.2 1.035 21.611 1 20.21 ? C6 LGF 361 A 1 HETATM 21 C C7 LGF . . . B 2 -2.061 2.353 21.457 1 23.7 ? C7 LGF 361 A 1 HETATM 22 C C4 LGF . . . B 2 -1.644 0.226 22.697 1 23.28 ? C4 LGF 361 A 1 HETATM 23 N N3 LGF . . . B 2 -1.908 -1.175 22.459 1 23.8 ? N3 LGF 361 A 1 HETATM 24 C C2 LGF . . . B 2 -2.092 -1.736 21.089 1 24.39 ? C2 LGF 361 A 1 HETATM 25 C C1 LGF . . . B 2 -3.227 -0.914 20.433 1 21.02 ? C1 LGF 361 A 1 HETATM 26 O O17 LGF . . . B 2 -1.752 -3.357 23.167 1 26.64 ? O17 LGF 361 A 1 HETATM 27 N N26 LGF . . . B 2 0.015 -0.209 28.388 1 36.28 ? N26 LGF 361 A 1 HETATM 28 C C25 LGF . . . B 2 -1.025 -0.58 29.242 1 40.34 ? C25 LGF 361 A 1 HETATM 29 N N20 LGF . . . B 2 0.578 -0.466 26.062 1 26.01 ? N20 LGF 361 A 1 HETATM 30 O O34 LGF . . . B 2 0.907 -0.775 23.833 1 27.62 ? O34 LGF 361 A 1 HETATM 31 C C35 LGF . . . B 2 2.18 -0.05 23.914 1 29.69 ? C35 LGF 361 A 1 HETATM 32 O O28 LGF . . . B 2 -3.858 -2.641 28.301 1 44.22 ? O28 LGF 361 A 1 HETATM 33 C C29 LGF . . . B 2 -3.634 -1.602 30.445 1 53.16 ? C29 LGF 361 A 1 HETATM 34 O O31 LGF . . . B 2 -3.446 -0.491 30.957 1 54.93 ? O31 LGF 361 A 1 HETATM 35 N N30 LGF . . . B 2 -4.214 -2.575 31.258 1 60.2 ? N30 LGF 361 A 1 HETATM 36 C C36 LGF . . . B 2 -3.684 -3.892 31.486 1 63.18 ? C36 LGF 361 A 1 HETATM 37 C C37 LGF . . . B 2 -5.04 -4.598 31.463 1 65.46 ? C37 LGF 361 A 1 HETATM 38 O O40 LGF . . . B 2 -5.564 -4.696 30.14 1 67.46 ? O40 LGF 361 A 1 HETATM 39 C C38 LGF . . . B 2 -5.897 -3.763 32.401 1 64.66 ? C38 LGF 361 A 1 HETATM 40 C C39 LGF . . . B 2 -5.465 -2.335 31.984 1 63.04 ? C39 LGF 361 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #