data_2QDL
#
_model_server_result.job_id            ky6qGqpkKyRPBMaLgYRpng 
_model_server_result.datetime_utc      '2024-11-05 00:37:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qdl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":168}' 
#
_entry.id    2QDL 
#
_exptl.entry_id    2QDL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.37 
_cell.angle_gamma         90 
_cell.entry_id            2QDL 
_cell.length_a            51.214 
_cell.length_b            62.235 
_cell.length_c            55.142 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QDL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F 1 1 
B,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     2QDL 
_atom_sites.fract_transf_matrix[1][1]    0.019526 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.009259 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016068 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020071 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 166 156 GOL GOL . 
D 2 GOL A 1 167 157 GOL GOL . 
E 2 GOL A 1 168 158 GOL GOL . 
F 3 HOH A 1 169 159 HOH HOH . 
F 3 HOH A 2 170 160 HOH HOH . 
F 3 HOH A 3 171 161 HOH HOH . 
F 3 HOH A 4 172 162 HOH HOH . 
F 3 HOH A 5 173 163 HOH HOH . 
F 3 HOH A 6 174 165 HOH HOH . 
F 3 HOH A 7 175 166 HOH HOH . 
F 3 HOH A 8 176 167 HOH HOH . 
F 3 HOH A 9 177 170 HOH HOH . 
F 3 HOH A 10 178 171 HOH HOH . 
F 3 HOH A 11 179 172 HOH HOH . 
F 3 HOH A 12 180 173 HOH HOH . 
F 3 HOH A 13 181 174 HOH HOH . 
F 3 HOH A 14 182 176 HOH HOH . 
F 3 HOH A 15 183 178 HOH HOH . 
F 3 HOH A 16 184 180 HOH HOH . 
F 3 HOH A 17 185 183 HOH HOH . 
F 3 HOH A 18 186 185 HOH HOH . 
F 3 HOH A 19 187 187 HOH HOH . 
F 3 HOH A 20 188 188 HOH HOH . 
F 3 HOH A 21 189 189 HOH HOH . 
F 3 HOH A 22 190 190 HOH HOH . 
F 3 HOH A 23 191 191 HOH HOH . 
F 3 HOH A 24 192 192 HOH HOH . 
F 3 HOH A 25 193 193 HOH HOH . 
F 3 HOH A 26 194 194 HOH HOH . 
F 3 HOH A 27 195 195 HOH HOH . 
F 3 HOH A 28 196 196 HOH HOH . 
F 3 HOH A 29 197 199 HOH HOH . 
F 3 HOH A 30 198 201 HOH HOH . 
F 3 HOH A 31 199 202 HOH HOH . 
F 3 HOH A 32 200 205 HOH HOH . 
F 3 HOH A 33 201 206 HOH HOH . 
F 3 HOH A 34 202 207 HOH HOH . 
F 3 HOH A 35 203 208 HOH HOH . 
F 3 HOH A 36 204 209 HOH HOH . 
F 3 HOH A 37 205 211 HOH HOH . 
F 3 HOH A 38 206 212 HOH HOH . 
F 3 HOH A 39 207 213 HOH HOH . 
F 3 HOH A 40 208 215 HOH HOH . 
F 3 HOH A 41 209 216 HOH HOH . 
F 3 HOH A 42 210 218 HOH HOH . 
F 3 HOH A 43 211 219 HOH HOH . 
F 3 HOH A 44 212 225 HOH HOH . 
F 3 HOH A 45 213 227 HOH HOH . 
F 3 HOH A 46 214 229 HOH HOH . 
F 3 HOH A 47 215 230 HOH HOH . 
F 3 HOH A 48 216 231 HOH HOH . 
F 3 HOH A 49 217 233 HOH HOH . 
F 3 HOH A 50 218 234 HOH HOH . 
F 3 HOH A 51 219 235 HOH HOH . 
F 3 HOH A 52 220 242 HOH HOH . 
F 3 HOH A 53 221 243 HOH HOH . 
F 3 HOH A 54 222 244 HOH HOH . 
F 3 HOH A 55 223 245 HOH HOH . 
F 3 HOH A 56 224 246 HOH HOH . 
F 3 HOH A 57 225 247 HOH HOH . 
F 3 HOH A 58 226 248 HOH HOH . 
F 3 HOH A 59 227 250 HOH HOH . 
F 3 HOH A 60 228 251 HOH HOH . 
F 3 HOH A 61 229 252 HOH HOH . 
F 3 HOH A 62 230 253 HOH HOH . 
F 3 HOH A 63 231 255 HOH HOH . 
F 3 HOH A 64 232 256 HOH HOH . 
F 3 HOH A 65 233 257 HOH HOH . 
F 3 HOH A 66 234 258 HOH HOH . 
F 3 HOH A 67 235 259 HOH HOH . 
F 3 HOH A 68 236 260 HOH HOH . 
G 3 HOH B 1 166 164 HOH HOH . 
G 3 HOH B 2 167 168 HOH HOH . 
G 3 HOH B 3 168 169 HOH HOH . 
G 3 HOH B 4 169 175 HOH HOH . 
G 3 HOH B 5 170 177 HOH HOH . 
G 3 HOH B 6 171 179 HOH HOH . 
G 3 HOH B 7 172 181 HOH HOH . 
G 3 HOH B 8 173 182 HOH HOH . 
G 3 HOH B 9 174 184 HOH HOH . 
G 3 HOH B 10 175 186 HOH HOH . 
G 3 HOH B 11 176 197 HOH HOH . 
G 3 HOH B 12 177 198 HOH HOH . 
G 3 HOH B 13 178 200 HOH HOH . 
G 3 HOH B 14 179 203 HOH HOH . 
G 3 HOH B 15 180 204 HOH HOH . 
G 3 HOH B 16 181 210 HOH HOH . 
G 3 HOH B 17 182 214 HOH HOH . 
G 3 HOH B 18 183 217 HOH HOH . 
G 3 HOH B 19 184 220 HOH HOH . 
G 3 HOH B 20 185 221 HOH HOH . 
G 3 HOH B 21 186 222 HOH HOH . 
G 3 HOH B 22 187 223 HOH HOH . 
G 3 HOH B 23 188 224 HOH HOH . 
G 3 HOH B 24 189 226 HOH HOH . 
G 3 HOH B 25 190 228 HOH HOH . 
G 3 HOH B 26 191 232 HOH HOH . 
G 3 HOH B 27 192 236 HOH HOH . 
G 3 HOH B 28 193 237 HOH HOH . 
G 3 HOH B 29 194 238 HOH HOH . 
G 3 HOH B 30 195 239 HOH HOH . 
G 3 HOH B 31 196 240 HOH HOH . 
G 3 HOH B 32 197 241 HOH HOH . 
G 3 HOH B 33 198 249 HOH HOH . 
G 3 HOH B 34 199 254 HOH HOH . 
G 3 HOH B 35 200 261 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 29.15 25.437 6.674 1 34.83 ? C1 GOL 168 A 1 
HETATM 2 O O1 GOL . . . E 2 27.794 25.253 6.339 1 32.38 ? O1 GOL 168 A 1 
HETATM 3 C C2 GOL . . . E 2 29.54 24.42 7.746 1 36.62 ? C2 GOL 168 A 1 
HETATM 4 O O2 GOL . . . E 2 30.495 24.955 8.624 1 39.61 ? O2 GOL 168 A 1 
HETATM 5 C C3 GOL . . . E 2 30.288 23.299 7.084 1 35.04 ? C3 GOL 168 A 1 
HETATM 6 O O3 GOL . . . E 2 29.654 22.956 5.891 1 35.76 ? O3 GOL 168 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#