data_2QDS # _model_server_result.job_id s_cP4pjNPApaza5Q56HHhw _model_server_result.datetime_utc '2024-11-14 04:20:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":605}' # _entry.id 2QDS # _exptl.entry_id 2QDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QDS _cell.length_a 43.001 _cell.length_b 100.99 _cell.length_c 116.819 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 72 A ASP 120 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc2 A SG CYS 166 A CYS 221 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A NE2 HIS 204 A HIS 263 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 B ZN ZN . A ZN 401 1_555 G O2 MCO . A MCO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2QDS _atom_sites.fract_transf_matrix[1][1] 0.023255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 3 SO4 A 1 601 601 SO4 SUL . D 3 SO4 A 1 602 602 SO4 SUL . E 3 SO4 A 1 603 603 SO4 SUL . F 3 SO4 A 1 604 604 SO4 SUL . G 4 MCO A 1 501 501 MCO MCO . H 5 GOL A 1 605 605 GOL GOL . I 5 GOL A 1 606 606 GOL GOL . J 6 HOH A 1 607 10 HOH HOH . J 6 HOH A 2 608 11 HOH HOH . J 6 HOH A 3 609 12 HOH HOH . J 6 HOH A 4 610 13 HOH HOH . J 6 HOH A 5 611 17 HOH HOH . J 6 HOH A 6 612 19 HOH HOH . J 6 HOH A 7 613 20 HOH HOH . J 6 HOH A 8 614 21 HOH HOH . J 6 HOH A 9 615 22 HOH HOH . J 6 HOH A 10 616 23 HOH HOH . J 6 HOH A 11 617 24 HOH HOH . J 6 HOH A 12 618 25 HOH HOH . J 6 HOH A 13 619 26 HOH HOH . J 6 HOH A 14 620 27 HOH HOH . J 6 HOH A 15 621 28 HOH HOH . J 6 HOH A 16 622 29 HOH HOH . J 6 HOH A 17 623 30 HOH HOH . J 6 HOH A 18 624 31 HOH HOH . J 6 HOH A 19 625 32 HOH HOH . J 6 HOH A 20 626 33 HOH HOH . J 6 HOH A 21 627 34 HOH HOH . J 6 HOH A 22 628 35 HOH HOH . J 6 HOH A 23 629 36 HOH HOH . J 6 HOH A 24 630 37 HOH HOH . J 6 HOH A 25 631 38 HOH HOH . J 6 HOH A 26 632 39 HOH HOH . J 6 HOH A 27 633 40 HOH HOH . J 6 HOH A 28 634 41 HOH HOH . J 6 HOH A 29 635 42 HOH HOH . J 6 HOH A 30 636 43 HOH HOH . J 6 HOH A 31 637 44 HOH HOH . J 6 HOH A 32 638 45 HOH HOH . J 6 HOH A 33 639 46 HOH HOH . J 6 HOH A 34 640 47 HOH HOH . J 6 HOH A 35 641 48 HOH HOH . J 6 HOH A 36 642 49 HOH HOH . J 6 HOH A 37 643 50 HOH HOH . J 6 HOH A 38 644 51 HOH HOH . J 6 HOH A 39 645 52 HOH HOH . J 6 HOH A 40 646 53 HOH HOH . J 6 HOH A 41 647 54 HOH HOH . J 6 HOH A 42 648 55 HOH HOH . J 6 HOH A 43 649 56 HOH HOH . J 6 HOH A 44 650 57 HOH HOH . J 6 HOH A 45 651 58 HOH HOH . J 6 HOH A 46 652 59 HOH HOH . J 6 HOH A 47 653 60 HOH HOH . J 6 HOH A 48 654 62 HOH HOH . J 6 HOH A 49 655 63 HOH HOH . J 6 HOH A 50 656 64 HOH HOH . J 6 HOH A 51 657 65 HOH HOH . J 6 HOH A 52 658 66 HOH HOH . J 6 HOH A 53 659 67 HOH HOH . J 6 HOH A 54 660 68 HOH HOH . J 6 HOH A 55 661 69 HOH HOH . J 6 HOH A 56 662 70 HOH HOH . J 6 HOH A 57 663 71 HOH HOH . J 6 HOH A 58 664 72 HOH HOH . J 6 HOH A 59 665 73 HOH HOH . J 6 HOH A 60 666 74 HOH HOH . J 6 HOH A 61 667 75 HOH HOH . J 6 HOH A 62 668 77 HOH HOH . J 6 HOH A 63 669 78 HOH HOH . J 6 HOH A 64 670 79 HOH HOH . J 6 HOH A 65 671 80 HOH HOH . J 6 HOH A 66 672 81 HOH HOH . J 6 HOH A 67 673 83 HOH HOH . J 6 HOH A 68 674 85 HOH HOH . J 6 HOH A 69 675 86 HOH HOH . J 6 HOH A 70 676 87 HOH HOH . J 6 HOH A 71 677 88 HOH HOH . J 6 HOH A 72 678 89 HOH HOH . J 6 HOH A 73 679 90 HOH HOH . J 6 HOH A 74 680 91 HOH HOH . J 6 HOH A 75 681 92 HOH HOH . J 6 HOH A 76 682 93 HOH HOH . J 6 HOH A 77 683 94 HOH HOH . J 6 HOH A 78 684 95 HOH HOH . J 6 HOH A 79 685 96 HOH HOH . J 6 HOH A 80 686 97 HOH HOH . J 6 HOH A 81 687 98 HOH HOH . J 6 HOH A 82 688 99 HOH HOH . J 6 HOH A 83 689 100 HOH HOH . J 6 HOH A 84 690 101 HOH HOH . J 6 HOH A 85 691 102 HOH HOH . J 6 HOH A 86 692 103 HOH HOH . J 6 HOH A 87 693 104 HOH HOH . J 6 HOH A 88 694 105 HOH HOH . J 6 HOH A 89 695 106 HOH HOH . J 6 HOH A 90 696 107 HOH HOH . J 6 HOH A 91 697 108 HOH HOH . J 6 HOH A 92 698 109 HOH HOH . J 6 HOH A 93 699 110 HOH HOH . J 6 HOH A 94 700 111 HOH HOH . J 6 HOH A 95 701 112 HOH HOH . J 6 HOH A 96 702 113 HOH HOH . J 6 HOH A 97 703 114 HOH HOH . J 6 HOH A 98 704 115 HOH HOH . J 6 HOH A 99 705 117 HOH HOH . J 6 HOH A 100 706 118 HOH HOH . J 6 HOH A 101 707 119 HOH HOH . J 6 HOH A 102 708 120 HOH HOH . J 6 HOH A 103 709 121 HOH HOH . J 6 HOH A 104 710 122 HOH HOH . J 6 HOH A 105 711 123 HOH HOH . J 6 HOH A 106 712 124 HOH HOH . J 6 HOH A 107 713 125 HOH HOH . J 6 HOH A 108 714 126 HOH HOH . J 6 HOH A 109 715 127 HOH HOH . J 6 HOH A 110 716 128 HOH HOH . J 6 HOH A 111 717 129 HOH HOH . J 6 HOH A 112 718 131 HOH HOH . J 6 HOH A 113 719 132 HOH HOH . J 6 HOH A 114 720 133 HOH HOH . J 6 HOH A 115 721 134 HOH HOH . J 6 HOH A 116 722 135 HOH HOH . J 6 HOH A 117 723 136 HOH HOH . J 6 HOH A 118 724 138 HOH HOH . J 6 HOH A 119 725 139 HOH HOH . J 6 HOH A 120 726 140 HOH HOH . J 6 HOH A 121 727 141 HOH HOH . J 6 HOH A 122 728 142 HOH HOH . J 6 HOH A 123 729 143 HOH HOH . J 6 HOH A 124 730 144 HOH HOH . J 6 HOH A 125 731 145 HOH HOH . J 6 HOH A 126 732 146 HOH HOH . J 6 HOH A 127 733 147 HOH HOH . J 6 HOH A 128 734 148 HOH HOH . J 6 HOH A 129 735 149 HOH HOH . J 6 HOH A 130 736 150 HOH HOH . J 6 HOH A 131 737 151 HOH HOH . J 6 HOH A 132 738 152 HOH HOH . J 6 HOH A 133 739 153 HOH HOH . J 6 HOH A 134 740 154 HOH HOH . J 6 HOH A 135 741 155 HOH HOH . J 6 HOH A 136 742 156 HOH HOH . J 6 HOH A 137 743 157 HOH HOH . J 6 HOH A 138 744 158 HOH HOH . J 6 HOH A 139 745 159 HOH HOH . J 6 HOH A 140 746 160 HOH HOH . J 6 HOH A 141 747 161 HOH HOH . J 6 HOH A 142 748 163 HOH HOH . J 6 HOH A 143 749 164 HOH HOH . J 6 HOH A 144 750 165 HOH HOH . J 6 HOH A 145 751 166 HOH HOH . J 6 HOH A 146 752 167 HOH HOH . J 6 HOH A 147 753 168 HOH HOH . J 6 HOH A 148 754 169 HOH HOH . J 6 HOH A 149 755 170 HOH HOH . J 6 HOH A 150 756 171 HOH HOH . J 6 HOH A 151 757 173 HOH HOH . J 6 HOH A 152 758 174 HOH HOH . J 6 HOH A 153 759 175 HOH HOH . J 6 HOH A 154 760 176 HOH HOH . J 6 HOH A 155 761 177 HOH HOH . J 6 HOH A 156 762 178 HOH HOH . J 6 HOH A 157 763 179 HOH HOH . J 6 HOH A 158 764 180 HOH HOH . J 6 HOH A 159 765 181 HOH HOH . J 6 HOH A 160 766 183 HOH HOH . J 6 HOH A 161 767 184 HOH HOH . J 6 HOH A 162 768 186 HOH HOH . J 6 HOH A 163 769 187 HOH HOH . J 6 HOH A 164 770 188 HOH HOH . J 6 HOH A 165 771 189 HOH HOH . J 6 HOH A 166 772 190 HOH HOH . J 6 HOH A 167 773 191 HOH HOH . J 6 HOH A 168 774 192 HOH HOH . J 6 HOH A 169 775 193 HOH HOH . J 6 HOH A 170 776 194 HOH HOH . J 6 HOH A 171 777 195 HOH HOH . J 6 HOH A 172 778 196 HOH HOH . J 6 HOH A 173 779 197 HOH HOH . J 6 HOH A 174 780 198 HOH HOH . J 6 HOH A 175 781 199 HOH HOH . J 6 HOH A 176 782 200 HOH HOH . J 6 HOH A 177 783 201 HOH HOH . J 6 HOH A 178 784 202 HOH HOH . J 6 HOH A 179 785 203 HOH HOH . J 6 HOH A 180 786 204 HOH HOH . J 6 HOH A 181 787 205 HOH HOH . J 6 HOH A 182 788 206 HOH HOH . J 6 HOH A 183 789 207 HOH HOH . J 6 HOH A 184 790 208 HOH HOH . J 6 HOH A 185 791 209 HOH HOH . J 6 HOH A 186 792 210 HOH HOH . J 6 HOH A 187 793 211 HOH HOH . J 6 HOH A 188 794 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 9.509 29.494 87.994 1 30.36 ? C1 GOL 605 A 1 HETATM 2 O O1 GOL . . . H 5 10.645 29.015 87.331 1 29.49 ? O1 GOL 605 A 1 HETATM 3 C C2 GOL . . . H 5 8.469 28.425 88.239 1 29.96 ? C2 GOL 605 A 1 HETATM 4 O O2 GOL . . . H 5 7.954 27.974 87.012 1 30.16 ? O2 GOL 605 A 1 HETATM 5 C C3 GOL . . . H 5 7.343 29.021 89.066 1 30.42 ? C3 GOL 605 A 1 HETATM 6 O O3 GOL . . . H 5 7.142 30.379 88.729 1 27.16 ? O3 GOL 605 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #