data_2QDT # _model_server_result.job_id d44KJwSoauPUi2CAfUp68A _model_server_result.datetime_utc '2024-11-13 02:07:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 2QDT # _exptl.entry_id 2QDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QDT _cell.length_a 105.319 _cell.length_b 105.319 _cell.length_c 97.96 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+2/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -52.6595 91.20893 65.306667 3 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 32.653333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 218 A CYS 218 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 29 A HIS 29 12_565 D ZN ZN . A ZN 403 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.716 ? metalc ? metalc2 A ND1 HIS 29 A HIS 29 12_565 D ZN ZN . A ZN 403 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.101 ? metalc ? metalc3 A NE2 HIS 84 A HIS 84 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc4 A ND1 HIS 86 A HIS 86 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 A OD2 ASP 88 A ASP 88 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc6 A NE2 HIS 89 A HIS 89 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc7 A NE2 HIS 160 A HIS 160 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc8 A NE2 HIS 225 A HIS 225 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc9 B ZN ZN . A ZN 401 1_555 H S I38 . A I38 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc10 C ZN ZN . A ZN 402 1_555 H S I38 . A I38 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2QDT _atom_sites.fract_transf_matrix[1][1] 0.009495 _atom_sites.fract_transf_matrix[1][2] 0.005482 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 2 ZN A 1 402 402 ZN ZN . D 2 ZN A 1 403 403 ZN ZN . E 3 SO4 A 1 602 602 SO4 SUL . F 3 SO4 A 1 603 603 SO4 SUL . G 3 SO4 A 1 604 604 SO4 SUL . H 4 I38 A 1 501 501 I38 I38 . I 5 HOH A 1 605 10 HOH HOH . I 5 HOH A 2 606 11 HOH HOH . I 5 HOH A 3 607 12 HOH HOH . I 5 HOH A 4 608 13 HOH HOH . I 5 HOH A 5 609 14 HOH HOH . I 5 HOH A 6 610 15 HOH HOH . I 5 HOH A 7 611 16 HOH HOH . I 5 HOH A 8 612 17 HOH HOH . I 5 HOH A 9 613 18 HOH HOH . I 5 HOH A 10 614 19 HOH HOH . I 5 HOH A 11 615 20 HOH HOH . I 5 HOH A 12 616 21 HOH HOH . I 5 HOH A 13 617 22 HOH HOH . I 5 HOH A 14 618 23 HOH HOH . I 5 HOH A 15 619 24 HOH HOH . I 5 HOH A 16 620 25 HOH HOH . I 5 HOH A 17 621 26 HOH HOH . I 5 HOH A 18 622 27 HOH HOH . I 5 HOH A 19 623 28 HOH HOH . I 5 HOH A 20 624 29 HOH HOH . I 5 HOH A 21 625 30 HOH HOH . I 5 HOH A 22 626 31 HOH HOH . I 5 HOH A 23 627 32 HOH HOH . I 5 HOH A 24 628 33 HOH HOH . I 5 HOH A 25 629 34 HOH HOH . I 5 HOH A 26 630 35 HOH HOH . I 5 HOH A 27 631 36 HOH HOH . I 5 HOH A 28 632 37 HOH HOH . I 5 HOH A 29 633 38 HOH HOH . I 5 HOH A 30 634 39 HOH HOH . I 5 HOH A 31 635 40 HOH HOH . I 5 HOH A 32 636 41 HOH HOH . I 5 HOH A 33 637 42 HOH HOH . I 5 HOH A 34 638 43 HOH HOH . I 5 HOH A 35 639 44 HOH HOH . I 5 HOH A 36 640 45 HOH HOH . I 5 HOH A 37 641 46 HOH HOH . I 5 HOH A 38 642 47 HOH HOH . I 5 HOH A 39 643 48 HOH HOH . I 5 HOH A 40 644 49 HOH HOH . I 5 HOH A 41 645 50 HOH HOH . I 5 HOH A 42 646 51 HOH HOH . I 5 HOH A 43 647 52 HOH HOH . I 5 HOH A 44 648 53 HOH HOH . I 5 HOH A 45 649 54 HOH HOH . I 5 HOH A 46 650 55 HOH HOH . I 5 HOH A 47 651 56 HOH HOH . I 5 HOH A 48 652 57 HOH HOH . I 5 HOH A 49 653 58 HOH HOH . I 5 HOH A 50 654 59 HOH HOH . I 5 HOH A 51 655 60 HOH HOH . I 5 HOH A 52 656 61 HOH HOH . I 5 HOH A 53 657 62 HOH HOH . I 5 HOH A 54 658 63 HOH HOH . I 5 HOH A 55 659 64 HOH HOH . I 5 HOH A 56 660 65 HOH HOH . I 5 HOH A 57 661 66 HOH HOH . I 5 HOH A 58 662 67 HOH HOH . I 5 HOH A 59 663 68 HOH HOH . I 5 HOH A 60 664 69 HOH HOH . I 5 HOH A 61 665 70 HOH HOH . I 5 HOH A 62 666 71 HOH HOH . I 5 HOH A 63 667 72 HOH HOH . I 5 HOH A 64 668 73 HOH HOH . I 5 HOH A 65 669 74 HOH HOH . I 5 HOH A 66 670 75 HOH HOH . I 5 HOH A 67 671 76 HOH HOH . I 5 HOH A 68 672 77 HOH HOH . I 5 HOH A 69 673 78 HOH HOH . I 5 HOH A 70 674 79 HOH HOH . I 5 HOH A 71 675 80 HOH HOH . I 5 HOH A 72 676 81 HOH HOH . I 5 HOH A 73 677 82 HOH HOH . I 5 HOH A 74 678 83 HOH HOH . I 5 HOH A 75 679 84 HOH HOH . I 5 HOH A 76 680 85 HOH HOH . I 5 HOH A 77 681 86 HOH HOH . I 5 HOH A 78 682 87 HOH HOH . I 5 HOH A 79 683 88 HOH HOH . I 5 HOH A 80 684 89 HOH HOH . I 5 HOH A 81 685 90 HOH HOH . I 5 HOH A 82 686 91 HOH HOH . I 5 HOH A 83 687 92 HOH HOH . I 5 HOH A 84 688 93 HOH HOH . I 5 HOH A 85 689 94 HOH HOH . I 5 HOH A 86 690 95 HOH HOH . I 5 HOH A 87 691 96 HOH HOH . I 5 HOH A 88 692 97 HOH HOH . I 5 HOH A 89 693 98 HOH HOH . I 5 HOH A 90 694 99 HOH HOH . I 5 HOH A 91 695 100 HOH HOH . I 5 HOH A 92 696 101 HOH HOH . I 5 HOH A 93 697 102 HOH HOH . I 5 HOH A 94 698 103 HOH HOH . I 5 HOH A 95 699 104 HOH HOH . I 5 HOH A 96 700 105 HOH HOH . I 5 HOH A 97 701 106 HOH HOH . I 5 HOH A 98 702 107 HOH HOH . I 5 HOH A 99 703 108 HOH HOH . I 5 HOH A 100 704 109 HOH HOH . I 5 HOH A 101 705 110 HOH HOH . I 5 HOH A 102 706 111 HOH HOH . I 5 HOH A 103 707 112 HOH HOH . I 5 HOH A 104 708 113 HOH HOH . I 5 HOH A 105 709 114 HOH HOH . I 5 HOH A 106 710 115 HOH HOH . I 5 HOH A 107 711 116 HOH HOH . I 5 HOH A 108 712 117 HOH HOH . I 5 HOH A 109 713 118 HOH HOH . I 5 HOH A 110 714 119 HOH HOH . I 5 HOH A 111 715 120 HOH HOH . I 5 HOH A 112 716 121 HOH HOH . I 5 HOH A 113 717 122 HOH HOH . I 5 HOH A 114 718 123 HOH HOH . I 5 HOH A 115 719 124 HOH HOH . I 5 HOH A 116 720 125 HOH HOH . I 5 HOH A 117 721 126 HOH HOH . I 5 HOH A 118 722 127 HOH HOH . I 5 HOH A 119 723 128 HOH HOH . I 5 HOH A 120 724 129 HOH HOH . I 5 HOH A 121 725 130 HOH HOH . I 5 HOH A 122 726 131 HOH HOH . I 5 HOH A 123 727 132 HOH HOH . I 5 HOH A 124 728 133 HOH HOH . I 5 HOH A 125 729 134 HOH HOH . I 5 HOH A 126 730 135 HOH HOH . I 5 HOH A 127 731 136 HOH HOH . I 5 HOH A 128 732 137 HOH HOH . I 5 HOH A 129 733 138 HOH HOH . I 5 HOH A 130 734 139 HOH HOH . I 5 HOH A 131 735 140 HOH HOH . I 5 HOH A 132 736 141 HOH HOH . I 5 HOH A 133 737 142 HOH HOH . I 5 HOH A 134 738 143 HOH HOH . I 5 HOH A 135 739 144 HOH HOH . I 5 HOH A 136 740 145 HOH HOH . I 5 HOH A 137 741 146 HOH HOH . I 5 HOH A 138 742 147 HOH HOH . I 5 HOH A 139 743 148 HOH HOH . I 5 HOH A 140 744 149 HOH HOH . I 5 HOH A 141 745 150 HOH HOH . I 5 HOH A 142 746 151 HOH HOH . I 5 HOH A 143 747 152 HOH HOH . I 5 HOH A 144 748 153 HOH HOH . I 5 HOH A 145 749 154 HOH HOH . I 5 HOH A 146 750 155 HOH HOH . I 5 HOH A 147 751 156 HOH HOH . I 5 HOH A 148 752 157 HOH HOH . I 5 HOH A 149 753 158 HOH HOH . I 5 HOH A 150 754 159 HOH HOH . I 5 HOH A 151 755 160 HOH HOH . I 5 HOH A 152 756 161 HOH HOH . I 5 HOH A 153 757 162 HOH HOH . I 5 HOH A 154 758 163 HOH HOH . I 5 HOH A 155 759 164 HOH HOH . I 5 HOH A 156 760 165 HOH HOH . I 5 HOH A 157 761 166 HOH HOH . I 5 HOH A 158 762 167 HOH HOH . I 5 HOH A 159 763 168 HOH HOH . I 5 HOH A 160 764 169 HOH HOH . I 5 HOH A 161 765 170 HOH HOH . I 5 HOH A 162 766 171 HOH HOH . I 5 HOH A 163 767 172 HOH HOH . I 5 HOH A 164 768 173 HOH HOH . I 5 HOH A 165 769 175 HOH HOH . I 5 HOH A 166 770 176 HOH HOH . I 5 HOH A 167 771 177 HOH HOH . I 5 HOH A 168 772 178 HOH HOH . I 5 HOH A 169 773 180 HOH HOH . I 5 HOH A 170 774 181 HOH HOH . I 5 HOH A 171 775 182 HOH HOH . I 5 HOH A 172 776 183 HOH HOH . I 5 HOH A 173 777 184 HOH HOH . I 5 HOH A 174 778 185 HOH HOH . I 5 HOH A 175 779 186 HOH HOH . I 5 HOH A 176 780 187 HOH HOH . I 5 HOH A 177 781 188 HOH HOH . I 5 HOH A 178 782 189 HOH HOH . I 5 HOH A 179 783 190 HOH HOH . I 5 HOH A 180 784 191 HOH HOH . I 5 HOH A 181 785 192 HOH HOH . I 5 HOH A 182 786 193 HOH HOH . I 5 HOH A 183 787 194 HOH HOH . I 5 HOH A 184 788 195 HOH HOH . I 5 HOH A 185 789 196 HOH HOH . I 5 HOH A 186 790 197 HOH HOH . I 5 HOH A 187 791 198 HOH HOH . I 5 HOH A 188 792 199 HOH HOH . I 5 HOH A 189 793 200 HOH HOH . I 5 HOH A 190 794 201 HOH HOH . I 5 HOH A 191 795 202 HOH HOH . I 5 HOH A 192 796 203 HOH HOH . I 5 HOH A 193 797 204 HOH HOH . I 5 HOH A 194 798 205 HOH HOH . I 5 HOH A 195 799 206 HOH HOH . I 5 HOH A 196 800 207 HOH HOH . I 5 HOH A 197 801 208 HOH HOH . I 5 HOH A 198 802 209 HOH HOH . I 5 HOH A 199 803 210 HOH HOH . I 5 HOH A 200 804 211 HOH HOH . I 5 HOH A 201 805 212 HOH HOH . I 5 HOH A 202 806 213 HOH HOH . I 5 HOH A 203 807 214 HOH HOH . I 5 HOH A 204 808 215 HOH HOH . I 5 HOH A 205 809 217 HOH HOH . I 5 HOH A 206 810 218 HOH HOH . I 5 HOH A 207 811 219 HOH HOH . I 5 HOH A 208 812 220 HOH HOH . I 5 HOH A 209 813 221 HOH HOH . I 5 HOH A 210 814 222 HOH HOH . I 5 HOH A 211 815 223 HOH HOH . I 5 HOH A 212 816 224 HOH HOH . I 5 HOH A 213 817 226 HOH HOH . I 5 HOH A 214 818 227 HOH HOH . I 5 HOH A 215 819 228 HOH HOH . I 5 HOH A 216 820 229 HOH HOH . I 5 HOH A 217 821 230 HOH HOH . I 5 HOH A 218 822 231 HOH HOH . I 5 HOH A 219 823 232 HOH HOH . I 5 HOH A 220 824 233 HOH HOH . I 5 HOH A 221 825 234 HOH HOH . I 5 HOH A 222 826 235 HOH HOH . I 5 HOH A 223 827 236 HOH HOH . I 5 HOH A 224 828 237 HOH HOH . I 5 HOH A 225 829 238 HOH HOH . I 5 HOH A 226 830 239 HOH HOH . I 5 HOH A 227 831 240 HOH HOH . I 5 HOH A 228 832 241 HOH HOH . I 5 HOH A 229 833 242 HOH HOH . I 5 HOH A 230 834 243 HOH HOH . I 5 HOH A 231 835 244 HOH HOH . I 5 HOH A 232 836 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 ZN ZN ZN . A . D 2 -6.12 57.027 31.386 0.25 98.89 ? ZN ZN 403 A 1 HETATM 2 ZN ZN ZN . B . D 2 -8.198 57.488 34.283 0.25 139.02 ? ZN ZN 403 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #