data_2QEB # _model_server_result.job_id e8zB5VPPYNdvJrFnRCajHA _model_server_result.datetime_utc '2024-11-24 11:08:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qeb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":663}' # _entry.id 2QEB # _exptl.entry_id 2QEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QEB _cell.length_a 88.394 _cell.length_b 88.394 _cell.length_c 43.395 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 6 1_555 A SG CYS 39 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 20 A CYS 19 1_555 A SG CYS 145 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 78 A CYS 77 1_555 A SG CYS 97 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? disulf ? disulf4 B SG CYS 7 B CYS 6 1_555 B SG CYS 39 B CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 20 B CYS 19 1_555 B SG CYS 145 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 B SG CYS 78 B CYS 77 1_555 B SG CYS 97 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2QEB _atom_sites.fract_transf_matrix[1][1] 0.011313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HSM A 1 145 145 HSM HSM . D 3 GOL A 1 663 663 GOL GOL . E 2 HSM B 1 145 145 HSM HSM . F 3 GOL B 1 664 664 GOL GOL . G 3 GOL B 1 665 665 GOL GOL . H 4 HOH A 1 664 1 HOH HOH . H 4 HOH A 2 665 3 HOH HOH . H 4 HOH A 3 666 10 HOH HOH . H 4 HOH A 4 667 13 HOH HOH . H 4 HOH A 5 668 17 HOH HOH . H 4 HOH A 6 669 18 HOH HOH . H 4 HOH A 7 670 20 HOH HOH . H 4 HOH A 8 671 22 HOH HOH . H 4 HOH A 9 672 23 HOH HOH . H 4 HOH A 10 673 24 HOH HOH . H 4 HOH A 11 674 25 HOH HOH . H 4 HOH A 12 675 26 HOH HOH . H 4 HOH A 13 676 32 HOH HOH . H 4 HOH A 14 677 35 HOH HOH . H 4 HOH A 15 678 37 HOH HOH . H 4 HOH A 16 679 39 HOH HOH . H 4 HOH A 17 680 45 HOH HOH . H 4 HOH A 18 681 46 HOH HOH . H 4 HOH A 19 682 49 HOH HOH . H 4 HOH A 20 683 58 HOH HOH . H 4 HOH A 21 684 60 HOH HOH . H 4 HOH A 22 685 63 HOH HOH . H 4 HOH A 23 686 65 HOH HOH . H 4 HOH A 24 687 68 HOH HOH . H 4 HOH A 25 688 70 HOH HOH . H 4 HOH A 26 689 71 HOH HOH . H 4 HOH A 27 690 80 HOH HOH . H 4 HOH A 28 691 85 HOH HOH . H 4 HOH A 29 692 90 HOH HOH . H 4 HOH A 30 693 91 HOH HOH . H 4 HOH A 31 694 94 HOH HOH . H 4 HOH A 32 695 95 HOH HOH . H 4 HOH A 33 696 96 HOH HOH . H 4 HOH A 34 697 97 HOH HOH . H 4 HOH A 35 698 100 HOH HOH . H 4 HOH A 36 699 101 HOH HOH . H 4 HOH A 37 700 102 HOH HOH . H 4 HOH A 38 701 103 HOH HOH . H 4 HOH A 39 702 104 HOH HOH . H 4 HOH A 40 703 106 HOH HOH . H 4 HOH A 41 704 107 HOH HOH . H 4 HOH A 42 705 110 HOH HOH . H 4 HOH A 43 706 111 HOH HOH . H 4 HOH A 44 707 124 HOH HOH . H 4 HOH A 45 708 125 HOH HOH . H 4 HOH A 46 709 126 HOH HOH . H 4 HOH A 47 710 127 HOH HOH . H 4 HOH A 48 711 129 HOH HOH . H 4 HOH A 49 712 131 HOH HOH . H 4 HOH A 50 713 132 HOH HOH . H 4 HOH A 51 714 135 HOH HOH . H 4 HOH A 52 715 137 HOH HOH . H 4 HOH A 53 716 139 HOH HOH . H 4 HOH A 54 717 141 HOH HOH . H 4 HOH A 55 718 148 HOH HOH . H 4 HOH A 56 719 150 HOH HOH . H 4 HOH A 57 720 151 HOH HOH . H 4 HOH A 58 721 152 HOH HOH . H 4 HOH A 59 722 154 HOH HOH . H 4 HOH A 60 723 156 HOH HOH . H 4 HOH A 61 724 157 HOH HOH . H 4 HOH A 62 725 159 HOH HOH . H 4 HOH A 63 726 160 HOH HOH . H 4 HOH A 64 727 164 HOH HOH . H 4 HOH A 65 728 165 HOH HOH . H 4 HOH A 66 729 167 HOH HOH . H 4 HOH A 67 730 168 HOH HOH . H 4 HOH A 68 731 169 HOH HOH . H 4 HOH A 69 732 172 HOH HOH . H 4 HOH A 70 733 174 HOH HOH . H 4 HOH A 71 734 175 HOH HOH . H 4 HOH A 72 735 177 HOH HOH . H 4 HOH A 73 736 178 HOH HOH . H 4 HOH A 74 737 180 HOH HOH . H 4 HOH A 75 738 182 HOH HOH . H 4 HOH A 76 739 183 HOH HOH . H 4 HOH A 77 740 184 HOH HOH . H 4 HOH A 78 741 185 HOH HOH . H 4 HOH A 79 742 186 HOH HOH . H 4 HOH A 80 743 187 HOH HOH . H 4 HOH A 81 744 188 HOH HOH . H 4 HOH A 82 745 190 HOH HOH . H 4 HOH A 83 746 192 HOH HOH . H 4 HOH A 84 747 194 HOH HOH . H 4 HOH A 85 748 196 HOH HOH . H 4 HOH A 86 749 198 HOH HOH . H 4 HOH A 87 750 201 HOH HOH . H 4 HOH A 88 751 202 HOH HOH . H 4 HOH A 89 752 203 HOH HOH . H 4 HOH A 90 753 204 HOH HOH . H 4 HOH A 91 754 205 HOH HOH . H 4 HOH A 92 755 206 HOH HOH . H 4 HOH A 93 756 207 HOH HOH . H 4 HOH A 94 757 211 HOH HOH . I 4 HOH B 1 666 212 HOH HOH . I 4 HOH B 2 667 213 HOH HOH . I 4 HOH B 3 668 2 HOH HOH . I 4 HOH B 4 669 5 HOH HOH . I 4 HOH B 5 670 6 HOH HOH . I 4 HOH B 6 671 7 HOH HOH . I 4 HOH B 7 672 8 HOH HOH . I 4 HOH B 8 673 9 HOH HOH . I 4 HOH B 9 674 12 HOH HOH . I 4 HOH B 10 675 14 HOH HOH . I 4 HOH B 11 676 15 HOH HOH . I 4 HOH B 12 677 16 HOH HOH . I 4 HOH B 13 678 19 HOH HOH . I 4 HOH B 14 679 21 HOH HOH . I 4 HOH B 15 680 27 HOH HOH . I 4 HOH B 16 681 28 HOH HOH . I 4 HOH B 17 682 29 HOH HOH . I 4 HOH B 18 683 30 HOH HOH . I 4 HOH B 19 684 31 HOH HOH . I 4 HOH B 20 685 33 HOH HOH . I 4 HOH B 21 686 34 HOH HOH . I 4 HOH B 22 687 36 HOH HOH . I 4 HOH B 23 688 40 HOH HOH . I 4 HOH B 24 689 41 HOH HOH . I 4 HOH B 25 690 42 HOH HOH . I 4 HOH B 26 691 43 HOH HOH . I 4 HOH B 27 692 44 HOH HOH . I 4 HOH B 28 693 48 HOH HOH . I 4 HOH B 29 694 50 HOH HOH . I 4 HOH B 30 695 51 HOH HOH . I 4 HOH B 31 696 52 HOH HOH . I 4 HOH B 32 697 53 HOH HOH . I 4 HOH B 33 698 54 HOH HOH . I 4 HOH B 34 699 57 HOH HOH . I 4 HOH B 35 700 59 HOH HOH . I 4 HOH B 36 701 61 HOH HOH . I 4 HOH B 37 702 62 HOH HOH . I 4 HOH B 38 703 64 HOH HOH . I 4 HOH B 39 704 66 HOH HOH . I 4 HOH B 40 705 67 HOH HOH . I 4 HOH B 41 706 69 HOH HOH . I 4 HOH B 42 707 73 HOH HOH . I 4 HOH B 43 708 74 HOH HOH . I 4 HOH B 44 709 75 HOH HOH . I 4 HOH B 45 710 76 HOH HOH . I 4 HOH B 46 711 77 HOH HOH . I 4 HOH B 47 712 78 HOH HOH . I 4 HOH B 48 713 79 HOH HOH . I 4 HOH B 49 714 81 HOH HOH . I 4 HOH B 50 715 82 HOH HOH . I 4 HOH B 51 716 83 HOH HOH . I 4 HOH B 52 717 84 HOH HOH . I 4 HOH B 53 718 86 HOH HOH . I 4 HOH B 54 719 88 HOH HOH . I 4 HOH B 55 720 89 HOH HOH . I 4 HOH B 56 721 92 HOH HOH . I 4 HOH B 57 722 93 HOH HOH . I 4 HOH B 58 723 98 HOH HOH . I 4 HOH B 59 724 99 HOH HOH . I 4 HOH B 60 725 105 HOH HOH . I 4 HOH B 61 726 108 HOH HOH . I 4 HOH B 62 727 109 HOH HOH . I 4 HOH B 63 728 112 HOH HOH . I 4 HOH B 64 729 113 HOH HOH . I 4 HOH B 65 730 115 HOH HOH . I 4 HOH B 66 731 116 HOH HOH . I 4 HOH B 67 732 117 HOH HOH . I 4 HOH B 68 733 118 HOH HOH . I 4 HOH B 69 734 119 HOH HOH . I 4 HOH B 70 735 120 HOH HOH . I 4 HOH B 71 736 122 HOH HOH . I 4 HOH B 72 737 123 HOH HOH . I 4 HOH B 73 738 128 HOH HOH . I 4 HOH B 74 739 130 HOH HOH . I 4 HOH B 75 740 134 HOH HOH . I 4 HOH B 76 741 136 HOH HOH . I 4 HOH B 77 742 140 HOH HOH . I 4 HOH B 78 743 142 HOH HOH . I 4 HOH B 79 744 143 HOH HOH . I 4 HOH B 80 745 144 HOH HOH . I 4 HOH B 81 746 146 HOH HOH . I 4 HOH B 82 747 147 HOH HOH . I 4 HOH B 83 748 149 HOH HOH . I 4 HOH B 84 749 153 HOH HOH . I 4 HOH B 85 750 155 HOH HOH . I 4 HOH B 86 751 158 HOH HOH . I 4 HOH B 87 752 161 HOH HOH . I 4 HOH B 88 753 162 HOH HOH . I 4 HOH B 89 754 166 HOH HOH . I 4 HOH B 90 755 170 HOH HOH . I 4 HOH B 91 756 171 HOH HOH . I 4 HOH B 92 757 173 HOH HOH . I 4 HOH B 93 758 176 HOH HOH . I 4 HOH B 94 759 179 HOH HOH . I 4 HOH B 95 760 189 HOH HOH . I 4 HOH B 96 761 191 HOH HOH . I 4 HOH B 97 762 193 HOH HOH . I 4 HOH B 98 763 195 HOH HOH . I 4 HOH B 99 764 197 HOH HOH . I 4 HOH B 100 765 199 HOH HOH . I 4 HOH B 101 766 200 HOH HOH . I 4 HOH B 102 767 208 HOH HOH . I 4 HOH B 103 768 209 HOH HOH . I 4 HOH B 104 769 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -31.191 25.873 -1.273 1 32.89 ? C1 GOL 663 A 1 HETATM 2 O O1 GOL . . . D 3 -32.328 25.096 -0.953 1 37.88 ? O1 GOL 663 A 1 HETATM 3 C C2 GOL . . . D 3 -30.028 25.492 -0.358 1 40.72 ? C2 GOL 663 A 1 HETATM 4 O O2 GOL . . . D 3 -28.941 25.008 -1.136 1 32.94 ? O2 GOL 663 A 1 HETATM 5 C C3 GOL . . . D 3 -30.511 24.419 0.619 1 44.58 ? C3 GOL 663 A 1 HETATM 6 O O3 GOL . . . D 3 -30.206 24.773 1.956 1 49.3 ? O3 GOL 663 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #