data_2QEH # _model_server_result.job_id oQfGh63uUaySMyKUMtF-Bw _model_server_result.datetime_utc '2025-08-01 11:51:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qeh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":145}' # _entry.id 2QEH # _exptl.entry_id 2QEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SEROTONIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QEH _cell.length_a 63.358 _cell.length_b 63.358 _cell.length_c 42.617 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 6 1_555 A SG CYS 39 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 20 A CYS 19 1_555 A SG CYS 145 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 78 A CYS 77 1_555 A SG CYS 97 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id SRO _chem_comp.mon_nstd_flag . _chem_comp.name SEROTONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(2-AMINOETHYL)-1H-INDOL-5-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CZ3 SRO sing 290 n n OH HOH SRO sing 291 n n CZ3 CE3 SRO doub 292 n y CZ3 CH2 SRO sing 293 n y CH2 CZ2 SRO doub 294 n y CH2 HH2 SRO sing 295 n n CZ2 CE2 SRO sing 296 n y CZ2 HZ2 SRO sing 297 n n CE2 NE1 SRO sing 298 n y CE2 CD2 SRO doub 299 n y NE1 CD1 SRO sing 300 n y NE1 HNE1 SRO sing 301 n n CD1 CG SRO doub 302 n y CD1 HD1 SRO sing 303 n n CG CB SRO sing 304 n n CG CD2 SRO sing 305 n y CD2 CE3 SRO sing 306 n y CE3 HE3 SRO sing 307 n n CB CA SRO sing 308 n n CB HB1 SRO sing 309 n n CB HB2 SRO sing 310 n n CA NZ SRO sing 311 n n CA HA1 SRO sing 312 n n CA HA2 SRO sing 313 n n NZ HNZ1 SRO sing 314 n n NZ HNZ2 SRO sing 315 n n # _atom_sites.entry_id 2QEH _atom_sites.fract_transf_matrix[1][1] 0.015783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SRO A 1 145 145 SRO SRO . C 3 HOH A 1 146 1 HOH HOH . C 3 HOH A 2 147 3 HOH HOH . C 3 HOH A 3 148 4 HOH HOH . C 3 HOH A 4 149 5 HOH HOH . C 3 HOH A 5 150 6 HOH HOH . C 3 HOH A 6 151 7 HOH HOH . C 3 HOH A 7 152 8 HOH HOH . C 3 HOH A 8 153 9 HOH HOH . C 3 HOH A 9 154 10 HOH HOH . C 3 HOH A 10 155 11 HOH HOH . C 3 HOH A 11 156 12 HOH HOH . C 3 HOH A 12 157 13 HOH HOH . C 3 HOH A 13 158 15 HOH HOH . C 3 HOH A 14 159 16 HOH HOH . C 3 HOH A 15 160 17 HOH HOH . C 3 HOH A 16 161 18 HOH HOH . C 3 HOH A 17 162 19 HOH HOH . C 3 HOH A 18 163 20 HOH HOH . C 3 HOH A 19 164 22 HOH HOH . C 3 HOH A 20 165 23 HOH HOH . C 3 HOH A 21 166 25 HOH HOH . C 3 HOH A 22 167 26 HOH HOH . C 3 HOH A 23 168 27 HOH HOH . C 3 HOH A 24 169 28 HOH HOH . C 3 HOH A 25 170 30 HOH HOH . C 3 HOH A 26 171 31 HOH HOH . C 3 HOH A 27 172 32 HOH HOH . C 3 HOH A 28 173 33 HOH HOH . C 3 HOH A 29 174 34 HOH HOH . C 3 HOH A 30 175 36 HOH HOH . C 3 HOH A 31 176 37 HOH HOH . C 3 HOH A 32 177 38 HOH HOH . C 3 HOH A 33 178 39 HOH HOH . C 3 HOH A 34 179 40 HOH HOH . C 3 HOH A 35 180 41 HOH HOH . C 3 HOH A 36 181 42 HOH HOH . C 3 HOH A 37 182 43 HOH HOH . C 3 HOH A 38 183 44 HOH HOH . C 3 HOH A 39 184 46 HOH HOH . C 3 HOH A 40 185 47 HOH HOH . C 3 HOH A 41 186 48 HOH HOH . C 3 HOH A 42 187 49 HOH HOH . C 3 HOH A 43 188 50 HOH HOH . C 3 HOH A 44 189 51 HOH HOH . C 3 HOH A 45 190 54 HOH HOH . C 3 HOH A 46 191 55 HOH HOH . C 3 HOH A 47 192 56 HOH HOH . C 3 HOH A 48 193 57 HOH HOH . C 3 HOH A 49 194 58 HOH HOH . C 3 HOH A 50 195 59 HOH HOH . C 3 HOH A 51 196 60 HOH HOH . C 3 HOH A 52 197 61 HOH HOH . C 3 HOH A 53 198 62 HOH HOH . C 3 HOH A 54 199 63 HOH HOH . C 3 HOH A 55 200 64 HOH HOH . C 3 HOH A 56 201 65 HOH HOH . C 3 HOH A 57 202 66 HOH HOH . C 3 HOH A 58 203 67 HOH HOH . C 3 HOH A 59 204 68 HOH HOH . C 3 HOH A 60 205 69 HOH HOH . C 3 HOH A 61 206 70 HOH HOH . C 3 HOH A 62 207 71 HOH HOH . C 3 HOH A 63 208 73 HOH HOH . C 3 HOH A 64 209 74 HOH HOH . C 3 HOH A 65 210 75 HOH HOH . C 3 HOH A 66 211 76 HOH HOH . C 3 HOH A 67 212 77 HOH HOH . C 3 HOH A 68 213 78 HOH HOH . C 3 HOH A 69 214 79 HOH HOH . C 3 HOH A 70 215 80 HOH HOH . C 3 HOH A 71 216 81 HOH HOH . C 3 HOH A 72 217 82 HOH HOH . C 3 HOH A 73 218 83 HOH HOH . C 3 HOH A 74 219 84 HOH HOH . C 3 HOH A 75 220 85 HOH HOH . C 3 HOH A 76 221 86 HOH HOH . C 3 HOH A 77 222 87 HOH HOH . C 3 HOH A 78 223 88 HOH HOH . C 3 HOH A 79 224 89 HOH HOH . C 3 HOH A 80 225 90 HOH HOH . C 3 HOH A 81 226 91 HOH HOH . C 3 HOH A 82 227 92 HOH HOH . C 3 HOH A 83 228 93 HOH HOH . C 3 HOH A 84 229 94 HOH HOH . C 3 HOH A 85 230 95 HOH HOH . C 3 HOH A 86 231 96 HOH HOH . C 3 HOH A 87 232 97 HOH HOH . C 3 HOH A 88 233 98 HOH HOH . C 3 HOH A 89 234 99 HOH HOH . C 3 HOH A 90 235 100 HOH HOH . C 3 HOH A 91 236 101 HOH HOH . C 3 HOH A 92 237 102 HOH HOH . C 3 HOH A 93 238 104 HOH HOH . C 3 HOH A 94 239 105 HOH HOH . C 3 HOH A 95 240 106 HOH HOH . C 3 HOH A 96 241 107 HOH HOH . C 3 HOH A 97 242 108 HOH HOH . C 3 HOH A 98 243 109 HOH HOH . C 3 HOH A 99 244 110 HOH HOH . C 3 HOH A 100 245 111 HOH HOH . C 3 HOH A 101 246 112 HOH HOH . C 3 HOH A 102 247 113 HOH HOH . C 3 HOH A 103 248 114 HOH HOH . C 3 HOH A 104 249 115 HOH HOH . C 3 HOH A 105 250 116 HOH HOH . C 3 HOH A 106 251 117 HOH HOH . C 3 HOH A 107 252 118 HOH HOH . C 3 HOH A 108 253 119 HOH HOH . C 3 HOH A 109 254 120 HOH HOH . C 3 HOH A 110 255 121 HOH HOH . C 3 HOH A 111 256 122 HOH HOH . C 3 HOH A 112 257 123 HOH HOH . C 3 HOH A 113 258 124 HOH HOH . C 3 HOH A 114 259 125 HOH HOH . C 3 HOH A 115 260 126 HOH HOH . C 3 HOH A 116 261 127 HOH HOH . C 3 HOH A 117 262 128 HOH HOH . C 3 HOH A 118 263 129 HOH HOH . C 3 HOH A 119 264 130 HOH HOH . C 3 HOH A 120 265 131 HOH HOH . C 3 HOH A 121 266 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH SRO . . . B 2 16.517 -13.477 -4.024 1 22.22 ? OH SRO 145 A 1 HETATM 2 C CZ3 SRO . . . B 2 17.384 -12.477 -4.338 1 26.93 ? CZ3 SRO 145 A 1 HETATM 3 C CH2 SRO . . . B 2 16.974 -11.172 -4.064 1 20.05 ? CH2 SRO 145 A 1 HETATM 4 C CZ2 SRO . . . B 2 17.817 -10.121 -4.362 1 12.09 ? CZ2 SRO 145 A 1 HETATM 5 C CE2 SRO . . . B 2 19.043 -10.436 -4.917 1 15.46 ? CE2 SRO 145 A 1 HETATM 6 N NE1 SRO . . . B 2 20.077 -9.688 -5.347 1 12.57 ? NE1 SRO 145 A 1 HETATM 7 C CD1 SRO . . . B 2 21.037 -10.508 -5.836 1 15.28 ? CD1 SRO 145 A 1 HETATM 8 C CG SRO . . . B 2 20.621 -11.828 -5.725 1 16.33 ? CG SRO 145 A 1 HETATM 9 C CD2 SRO . . . B 2 19.35 -11.766 -5.156 1 20.2 ? CD2 SRO 145 A 1 HETATM 10 C CE3 SRO . . . B 2 18.547 -12.739 -4.865 1 16.73 ? CE3 SRO 145 A 1 HETATM 11 C CB SRO . . . B 2 21.442 -13.029 -6.167 1 14.71 ? CB SRO 145 A 1 HETATM 12 C CA SRO . . . B 2 22.937 -12.666 -6.115 1 15.39 ? CA SRO 145 A 1 HETATM 13 N NZ SRO . . . B 2 23.769 -13.828 -6.409 1 14 ? NZ SRO 145 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #