data_2QEI # _model_server_result.job_id kyYXEWYggzMgdSoRAlv56A _model_server_result.datetime_utc '2024-11-27 23:11:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":705}' # _entry.id 2QEI # _exptl.entry_id 2QEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.98 _cell.angle_gamma 90 _cell.entry_id 2QEI _cell.length_a 89.787 _cell.length_b 86.027 _cell.length_c 81.659 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 81.279659 0 81.214638 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 G NA NA . A NA 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 I OXT ALA . A ALA 601 1_555 H NA NA . A NA 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2QEI _atom_sites.fract_transf_matrix[1][1] 0.011137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001167 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 701 701 BOG BOG . C 2 BOG A 1 702 702 BOG BOG . D 2 BOG A 1 703 703 BOG BOG . E 2 BOG A 1 704 704 BOG BOG . F 2 BOG A 1 705 705 BOG BOG . G 3 NA A 1 751 751 NA NA . H 3 NA A 1 752 752 NA NA . I 4 ALA A 1 601 601 ALA ALA . J 5 CXX A 1 801 801 CXX CXX . K 5 CXX A 1 802 802 CXX CXX . L 6 HOH A 1 803 1 HOH HOH . L 6 HOH A 2 804 2 HOH HOH . L 6 HOH A 3 805 3 HOH HOH . L 6 HOH A 4 806 4 HOH HOH . L 6 HOH A 5 807 5 HOH HOH . L 6 HOH A 6 808 6 HOH HOH . L 6 HOH A 7 809 7 HOH HOH . L 6 HOH A 8 810 8 HOH HOH . L 6 HOH A 9 811 9 HOH HOH . L 6 HOH A 10 812 10 HOH HOH . L 6 HOH A 11 813 11 HOH HOH . L 6 HOH A 12 814 12 HOH HOH . L 6 HOH A 13 815 13 HOH HOH . L 6 HOH A 14 816 14 HOH HOH . L 6 HOH A 15 817 15 HOH HOH . L 6 HOH A 16 818 16 HOH HOH . L 6 HOH A 17 819 17 HOH HOH . L 6 HOH A 18 820 18 HOH HOH . L 6 HOH A 19 821 19 HOH HOH . L 6 HOH A 20 822 20 HOH HOH . L 6 HOH A 21 823 21 HOH HOH . L 6 HOH A 22 824 22 HOH HOH . L 6 HOH A 23 825 23 HOH HOH . L 6 HOH A 24 826 24 HOH HOH . L 6 HOH A 25 827 25 HOH HOH . L 6 HOH A 26 828 26 HOH HOH . L 6 HOH A 27 829 27 HOH HOH . L 6 HOH A 28 830 28 HOH HOH . L 6 HOH A 29 831 29 HOH HOH . L 6 HOH A 30 832 30 HOH HOH . L 6 HOH A 31 833 31 HOH HOH . L 6 HOH A 32 834 32 HOH HOH . L 6 HOH A 33 835 33 HOH HOH . L 6 HOH A 34 836 34 HOH HOH . L 6 HOH A 35 837 35 HOH HOH . L 6 HOH A 36 838 36 HOH HOH . L 6 HOH A 37 839 37 HOH HOH . L 6 HOH A 38 840 38 HOH HOH . L 6 HOH A 39 841 39 HOH HOH . L 6 HOH A 40 842 40 HOH HOH . L 6 HOH A 41 843 41 HOH HOH . L 6 HOH A 42 844 42 HOH HOH . L 6 HOH A 43 845 43 HOH HOH . L 6 HOH A 44 846 44 HOH HOH . L 6 HOH A 45 847 45 HOH HOH . L 6 HOH A 46 848 46 HOH HOH . L 6 HOH A 47 849 47 HOH HOH . L 6 HOH A 48 850 48 HOH HOH . L 6 HOH A 49 851 49 HOH HOH . L 6 HOH A 50 852 50 HOH HOH . L 6 HOH A 51 853 51 HOH HOH . L 6 HOH A 52 854 52 HOH HOH . L 6 HOH A 53 855 53 HOH HOH . L 6 HOH A 54 856 54 HOH HOH . L 6 HOH A 55 857 55 HOH HOH . L 6 HOH A 56 858 56 HOH HOH . L 6 HOH A 57 859 57 HOH HOH . L 6 HOH A 58 860 58 HOH HOH . L 6 HOH A 59 861 59 HOH HOH . L 6 HOH A 60 862 60 HOH HOH . L 6 HOH A 61 863 61 HOH HOH . L 6 HOH A 62 864 62 HOH HOH . L 6 HOH A 63 865 63 HOH HOH . L 6 HOH A 64 866 64 HOH HOH . L 6 HOH A 65 867 65 HOH HOH . L 6 HOH A 66 868 66 HOH HOH . L 6 HOH A 67 869 67 HOH HOH . L 6 HOH A 68 870 68 HOH HOH . L 6 HOH A 69 871 69 HOH HOH . L 6 HOH A 70 872 70 HOH HOH . L 6 HOH A 71 873 71 HOH HOH . L 6 HOH A 72 874 72 HOH HOH . L 6 HOH A 73 875 73 HOH HOH . L 6 HOH A 74 876 74 HOH HOH . L 6 HOH A 75 877 75 HOH HOH . L 6 HOH A 76 878 76 HOH HOH . L 6 HOH A 77 879 77 HOH HOH . L 6 HOH A 78 880 78 HOH HOH . L 6 HOH A 79 881 79 HOH HOH . L 6 HOH A 80 882 80 HOH HOH . L 6 HOH A 81 883 81 HOH HOH . L 6 HOH A 82 884 82 HOH HOH . L 6 HOH A 83 885 83 HOH HOH . L 6 HOH A 84 886 84 HOH HOH . L 6 HOH A 85 887 85 HOH HOH . L 6 HOH A 86 888 86 HOH HOH . L 6 HOH A 87 889 87 HOH HOH . L 6 HOH A 88 890 88 HOH HOH . L 6 HOH A 89 891 89 HOH HOH . L 6 HOH A 90 892 90 HOH HOH . L 6 HOH A 91 893 91 HOH HOH . L 6 HOH A 92 894 92 HOH HOH . L 6 HOH A 93 895 93 HOH HOH . L 6 HOH A 94 896 94 HOH HOH . L 6 HOH A 95 897 95 HOH HOH . L 6 HOH A 96 898 96 HOH HOH . L 6 HOH A 97 899 97 HOH HOH . L 6 HOH A 98 900 98 HOH HOH . L 6 HOH A 99 901 99 HOH HOH . L 6 HOH A 100 902 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . F 2 49.939 13.885 35.419 1 78.05 ? C1 BOG 705 A 1 HETATM 2 O O1 BOG . . . F 2 49.783 14.53 34.154 1 76.24 ? O1 BOG 705 A 1 HETATM 3 C C2 BOG . . . F 2 50.099 12.351 35.2 1 79.02 ? C2 BOG 705 A 1 HETATM 4 O O2 BOG . . . F 2 48.957 11.843 34.513 1 78.61 ? O2 BOG 705 A 1 HETATM 5 C C3 BOG . . . F 2 50.275 11.652 36.577 1 79.71 ? C3 BOG 705 A 1 HETATM 6 O O3 BOG . . . F 2 50.417 10.252 36.4 1 80.8 ? O3 BOG 705 A 1 HETATM 7 C C4 BOG . . . F 2 51.526 12.232 37.274 1 80.54 ? C4 BOG 705 A 1 HETATM 8 O O4 BOG . . . F 2 51.726 11.6 38.542 1 81.85 ? O4 BOG 705 A 1 HETATM 9 C C5 BOG . . . F 2 51.354 13.779 37.462 1 80.14 ? C5 BOG 705 A 1 HETATM 10 O O5 BOG . . . F 2 51.135 14.398 36.146 1 79.16 ? O5 BOG 705 A 1 HETATM 11 C C6 BOG . . . F 2 52.6 14.385 38.13 1 80.1 ? C6 BOG 705 A 1 HETATM 12 O O6 BOG . . . F 2 52.27 15.519 38.932 1 80.45 ? O6 BOG 705 A 1 HETATM 13 C C1' BOG . . . F 2 49.613 15.942 34.255 1 73.14 ? C1' BOG 705 A 1 HETATM 14 C C2' BOG . . . F 2 48.214 16.292 33.818 1 70.92 ? C2' BOG 705 A 1 HETATM 15 C C3' BOG . . . F 2 47.597 17.165 34.87 1 69.35 ? C3' BOG 705 A 1 HETATM 16 C C4' BOG . . . F 2 46.184 17.586 34.544 1 67.96 ? C4' BOG 705 A 1 HETATM 17 C C5' BOG . . . F 2 45.651 18.463 35.66 1 67.78 ? C5' BOG 705 A 1 HETATM 18 C C6' BOG . . . F 2 44.139 18.435 35.723 1 67.52 ? C6' BOG 705 A 1 HETATM 19 C C7' BOG . . . F 2 43.63 19.303 36.836 1 69.34 ? C7' BOG 705 A 1 HETATM 20 C C8' BOG . . . F 2 42.124 19.266 36.887 1 69.5 ? C8' BOG 705 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #