data_2QF8 # _model_server_result.job_id JnUt7lUwlVS3iNPhQgYvig _model_server_result.datetime_utc '2024-11-08 12:01:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":363}' # _entry.id 2QF8 # _exptl.entry_id 2QF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QF8 _cell.length_a 62.87 _cell.length_b 66.499 _cell.length_c 107.126 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG S 1 NAG 2 n B NAG 2 B 2 NAG S 2 NAG 2 n B NAG 3 B 3 NAG S 3 NAG 2 n B NAG 4 B 4 NAG S 4 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf2 A SG CYS 278 A CYS 279 1_555 A SG CYS 342 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 39 A ASN 39 1_555 C C1 NAG . A NAG 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale4 B O4 NAG . B NAG 3 1_555 B C1 NAG . B NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2QF8 _atom_sites.fract_transf_matrix[1][1] 0.015906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 363 1 NAG NAG . D 4 HOH A 1 368 1 HOH HOH . D 4 HOH A 2 369 2 HOH HOH . D 4 HOH A 3 370 3 HOH HOH . D 4 HOH A 4 371 4 HOH HOH . D 4 HOH A 5 372 5 HOH HOH . D 4 HOH A 6 373 6 HOH HOH . D 4 HOH A 7 374 7 HOH HOH . D 4 HOH A 8 375 8 HOH HOH . D 4 HOH A 9 376 9 HOH HOH . D 4 HOH A 10 377 10 HOH HOH . D 4 HOH A 11 378 11 HOH HOH . D 4 HOH A 12 379 12 HOH HOH . D 4 HOH A 13 380 13 HOH HOH . D 4 HOH A 14 381 14 HOH HOH . D 4 HOH A 15 382 15 HOH HOH . D 4 HOH A 16 383 16 HOH HOH . D 4 HOH A 17 384 17 HOH HOH . D 4 HOH A 18 385 18 HOH HOH . D 4 HOH A 19 386 19 HOH HOH . D 4 HOH A 20 387 20 HOH HOH . D 4 HOH A 21 388 21 HOH HOH . D 4 HOH A 22 389 22 HOH HOH . D 4 HOH A 23 390 23 HOH HOH . D 4 HOH A 24 391 24 HOH HOH . D 4 HOH A 25 392 25 HOH HOH . D 4 HOH A 26 393 26 HOH HOH . D 4 HOH A 27 394 27 HOH HOH . D 4 HOH A 28 395 28 HOH HOH . D 4 HOH A 29 396 29 HOH HOH . D 4 HOH A 30 397 30 HOH HOH . D 4 HOH A 31 398 31 HOH HOH . D 4 HOH A 32 399 32 HOH HOH . D 4 HOH A 33 400 33 HOH HOH . D 4 HOH A 34 401 34 HOH HOH . D 4 HOH A 35 402 35 HOH HOH . D 4 HOH A 36 403 36 HOH HOH . D 4 HOH A 37 404 37 HOH HOH . D 4 HOH A 38 405 38 HOH HOH . D 4 HOH A 39 406 39 HOH HOH . D 4 HOH A 40 407 40 HOH HOH . D 4 HOH A 41 408 41 HOH HOH . D 4 HOH A 42 409 42 HOH HOH . D 4 HOH A 43 410 43 HOH HOH . D 4 HOH A 44 411 44 HOH HOH . D 4 HOH A 45 412 45 HOH HOH . D 4 HOH A 46 413 46 HOH HOH . D 4 HOH A 47 414 47 HOH HOH . D 4 HOH A 48 415 48 HOH HOH . D 4 HOH A 49 416 49 HOH HOH . D 4 HOH A 50 417 50 HOH HOH . D 4 HOH A 51 418 51 HOH HOH . D 4 HOH A 52 419 52 HOH HOH . D 4 HOH A 53 420 53 HOH HOH . D 4 HOH A 54 421 54 HOH HOH . D 4 HOH A 55 422 55 HOH HOH . D 4 HOH A 56 423 56 HOH HOH . D 4 HOH A 57 424 57 HOH HOH . D 4 HOH A 58 425 58 HOH HOH . D 4 HOH A 59 426 59 HOH HOH . D 4 HOH A 60 427 60 HOH HOH . D 4 HOH A 61 428 61 HOH HOH . D 4 HOH A 62 429 62 HOH HOH . D 4 HOH A 63 430 63 HOH HOH . D 4 HOH A 64 431 64 HOH HOH . D 4 HOH A 65 432 65 HOH HOH . D 4 HOH A 66 433 66 HOH HOH . D 4 HOH A 67 434 67 HOH HOH . D 4 HOH A 68 435 68 HOH HOH . D 4 HOH A 69 436 69 HOH HOH . D 4 HOH A 70 437 70 HOH HOH . D 4 HOH A 71 438 71 HOH HOH . D 4 HOH A 72 439 72 HOH HOH . D 4 HOH A 73 440 73 HOH HOH . D 4 HOH A 74 441 74 HOH HOH . D 4 HOH A 75 442 75 HOH HOH . D 4 HOH A 76 443 76 HOH HOH . D 4 HOH A 77 444 77 HOH HOH . D 4 HOH A 78 445 78 HOH HOH . D 4 HOH A 79 446 79 HOH HOH . D 4 HOH A 80 447 80 HOH HOH . D 4 HOH A 81 448 81 HOH HOH . D 4 HOH A 82 449 82 HOH HOH . D 4 HOH A 83 450 83 HOH HOH . D 4 HOH A 84 451 84 HOH HOH . D 4 HOH A 85 452 85 HOH HOH . D 4 HOH A 86 453 86 HOH HOH . D 4 HOH A 87 454 87 HOH HOH . D 4 HOH A 88 455 88 HOH HOH . D 4 HOH A 89 456 89 HOH HOH . D 4 HOH A 90 457 90 HOH HOH . D 4 HOH A 91 458 91 HOH HOH . D 4 HOH A 92 459 92 HOH HOH . D 4 HOH A 93 460 93 HOH HOH . D 4 HOH A 94 461 94 HOH HOH . D 4 HOH A 95 462 95 HOH HOH . D 4 HOH A 96 463 96 HOH HOH . D 4 HOH A 97 464 97 HOH HOH . D 4 HOH A 98 465 98 HOH HOH . D 4 HOH A 99 466 99 HOH HOH . D 4 HOH A 100 467 100 HOH HOH . D 4 HOH A 101 468 101 HOH HOH . D 4 HOH A 102 469 102 HOH HOH . D 4 HOH A 103 470 103 HOH HOH . D 4 HOH A 104 471 104 HOH HOH . D 4 HOH A 105 472 105 HOH HOH . D 4 HOH A 106 473 106 HOH HOH . D 4 HOH A 107 474 107 HOH HOH . D 4 HOH A 108 475 108 HOH HOH . D 4 HOH A 109 476 109 HOH HOH . D 4 HOH A 110 477 110 HOH HOH . D 4 HOH A 111 478 111 HOH HOH . D 4 HOH A 112 479 112 HOH HOH . D 4 HOH A 113 480 113 HOH HOH . D 4 HOH A 114 481 114 HOH HOH . D 4 HOH A 115 482 115 HOH HOH . D 4 HOH A 116 483 116 HOH HOH . D 4 HOH A 117 484 117 HOH HOH . D 4 HOH A 118 485 118 HOH HOH . D 4 HOH A 119 486 119 HOH HOH . D 4 HOH A 120 487 120 HOH HOH . D 4 HOH A 121 488 121 HOH HOH . D 4 HOH A 122 489 122 HOH HOH . D 4 HOH A 123 490 123 HOH HOH . D 4 HOH A 124 491 124 HOH HOH . D 4 HOH A 125 492 125 HOH HOH . D 4 HOH A 126 493 126 HOH HOH . D 4 HOH A 127 494 127 HOH HOH . D 4 HOH A 128 495 128 HOH HOH . D 4 HOH A 129 496 129 HOH HOH . D 4 HOH A 130 497 130 HOH HOH . D 4 HOH A 131 498 131 HOH HOH . D 4 HOH A 132 499 132 HOH HOH . D 4 HOH A 133 500 133 HOH HOH . D 4 HOH A 134 501 134 HOH HOH . D 4 HOH A 135 502 135 HOH HOH . D 4 HOH A 136 503 136 HOH HOH . D 4 HOH A 137 504 137 HOH HOH . D 4 HOH A 138 505 138 HOH HOH . D 4 HOH A 139 506 139 HOH HOH . D 4 HOH A 140 507 140 HOH HOH . D 4 HOH A 141 508 141 HOH HOH . D 4 HOH A 142 509 142 HOH HOH . D 4 HOH A 143 510 143 HOH HOH . D 4 HOH A 144 511 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 -17.486 17.522 8.086 0.5 26.07 ? C1 NAG 363 A 1 HETATM 2 C C2 NAG . . . C 3 -16.971 18.111 9.404 0.5 24.59 ? C2 NAG 363 A 1 HETATM 3 C C3 NAG . . . C 3 -17.73 19.391 9.833 0.5 28.1 ? C3 NAG 363 A 1 HETATM 4 C C4 NAG . . . C 3 -18.303 20.151 8.62 0.5 28.74 ? C4 NAG 363 A 1 HETATM 5 C C5 NAG . . . C 3 -18.892 19.294 7.524 0.5 26.75 ? C5 NAG 363 A 1 HETATM 6 C C6 NAG . . . C 3 -19.311 20.24 6.399 0.5 25.62 ? C6 NAG 363 A 1 HETATM 7 C C7 NAG . . . C 3 -16.126 16.659 11.198 0.5 23.77 ? C7 NAG 363 A 1 HETATM 8 C C8 NAG . . . C 3 -16.289 16.208 12.617 0.5 24.97 ? C8 NAG 363 A 1 HETATM 9 N N2 NAG . . . C 3 -17.154 17.146 10.479 0.5 21.91 ? N2 NAG 363 A 1 HETATM 10 O O3 NAG . . . C 3 -16.87 20.242 10.619 0.5 23.39 ? O3 NAG 363 A 1 HETATM 11 O O4 NAG . . . C 3 -19.43 20.892 8.951 0.5 34.44 ? O4 NAG 363 A 1 HETATM 12 O O5 NAG . . . C 3 -17.89 18.429 7.091 0.5 24.96 ? O5 NAG 363 A 1 HETATM 13 O O6 NAG . . . C 3 -18.314 21.253 6.32 0.5 26.73 ? O6 NAG 363 A 1 HETATM 14 O O7 NAG . . . C 3 -14.995 16.528 10.779 0.5 24.67 ? O7 NAG 363 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #