data_2QGH
#
_model_server_result.job_id            nRton2VEe7gYQqrXEoO2Ow 
_model_server_result.datetime_utc      '2024-10-19 04:47:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qgh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1003}' 
#
_entry.id    2QGH 
#
_exptl.entry_id    2QGH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2QGH 
_cell.length_a            79.248 
_cell.length_b            79.248 
_cell.length_c            134.275 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QGH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 44.758333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C4A 
_struct_conn.ptnr1_label_comp_id            PLP 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PLP 
_struct_conn.ptnr1_auth_seq_id              406 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            NZ 
_struct_conn.ptnr2_label_comp_id            LYS 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             LYS 
_struct_conn.ptnr2_auth_seq_id              407 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.274 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2QGH 
_atom_sites.fract_transf_matrix[1][1]    0.012619 
_atom_sites.fract_transf_matrix[1][2]    0.007285 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014571 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007447 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLP A 1 406 1 PLP PLP . 
C 3 LYS A 1 407 2 LYS LYS . 
D 4 GOL A 1 1003 3 GOL GOL . 
E 5 HOH A 1 1004 1 HOH HOH . 
E 5 HOH A 2 1005 2 HOH HOH . 
E 5 HOH A 3 1006 3 HOH HOH . 
E 5 HOH A 4 1007 4 HOH HOH . 
E 5 HOH A 5 1008 5 HOH HOH . 
E 5 HOH A 6 1009 6 HOH HOH . 
E 5 HOH A 7 1010 7 HOH HOH . 
E 5 HOH A 8 1011 8 HOH HOH . 
E 5 HOH A 9 1012 9 HOH HOH . 
E 5 HOH A 10 1013 10 HOH HOH . 
E 5 HOH A 11 1014 11 HOH HOH . 
E 5 HOH A 12 1015 12 HOH HOH . 
E 5 HOH A 13 1016 13 HOH HOH . 
E 5 HOH A 14 1017 14 HOH HOH . 
E 5 HOH A 15 1018 15 HOH HOH . 
E 5 HOH A 16 1019 16 HOH HOH . 
E 5 HOH A 17 1020 17 HOH HOH . 
E 5 HOH A 18 1021 18 HOH HOH . 
E 5 HOH A 19 1022 19 HOH HOH . 
E 5 HOH A 20 1023 20 HOH HOH . 
E 5 HOH A 21 1024 21 HOH HOH . 
E 5 HOH A 22 1025 22 HOH HOH . 
E 5 HOH A 23 1026 23 HOH HOH . 
E 5 HOH A 24 1027 24 HOH HOH . 
E 5 HOH A 25 1028 25 HOH HOH . 
E 5 HOH A 26 1029 26 HOH HOH . 
E 5 HOH A 27 1030 27 HOH HOH . 
E 5 HOH A 28 1031 28 HOH HOH . 
E 5 HOH A 29 1032 29 HOH HOH . 
E 5 HOH A 30 1033 30 HOH HOH . 
E 5 HOH A 31 1034 31 HOH HOH . 
E 5 HOH A 32 1035 32 HOH HOH . 
E 5 HOH A 33 1036 33 HOH HOH . 
E 5 HOH A 34 1037 34 HOH HOH . 
E 5 HOH A 35 1038 35 HOH HOH . 
E 5 HOH A 36 1039 36 HOH HOH . 
E 5 HOH A 37 1040 37 HOH HOH . 
E 5 HOH A 38 1041 38 HOH HOH . 
E 5 HOH A 39 1042 39 HOH HOH . 
E 5 HOH A 40 1043 40 HOH HOH . 
E 5 HOH A 41 1044 41 HOH HOH . 
E 5 HOH A 42 1045 42 HOH HOH . 
E 5 HOH A 43 1046 43 HOH HOH . 
E 5 HOH A 44 1047 44 HOH HOH . 
E 5 HOH A 45 1048 45 HOH HOH . 
E 5 HOH A 46 1049 46 HOH HOH . 
E 5 HOH A 47 1050 47 HOH HOH . 
E 5 HOH A 48 1051 48 HOH HOH . 
E 5 HOH A 49 1052 49 HOH HOH . 
E 5 HOH A 50 1053 50 HOH HOH . 
E 5 HOH A 51 1054 51 HOH HOH . 
E 5 HOH A 52 1055 52 HOH HOH . 
E 5 HOH A 53 1056 53 HOH HOH . 
E 5 HOH A 54 1057 54 HOH HOH . 
E 5 HOH A 55 1058 55 HOH HOH . 
E 5 HOH A 56 1059 56 HOH HOH . 
E 5 HOH A 57 1060 57 HOH HOH . 
E 5 HOH A 58 1061 58 HOH HOH . 
E 5 HOH A 59 1062 59 HOH HOH . 
E 5 HOH A 60 1063 60 HOH HOH . 
E 5 HOH A 61 1064 61 HOH HOH . 
E 5 HOH A 62 1065 62 HOH HOH . 
E 5 HOH A 63 1066 63 HOH HOH . 
E 5 HOH A 64 1067 64 HOH HOH . 
E 5 HOH A 65 1068 65 HOH HOH . 
E 5 HOH A 66 1069 66 HOH HOH . 
E 5 HOH A 67 1070 67 HOH HOH . 
E 5 HOH A 68 1071 68 HOH HOH . 
E 5 HOH A 69 1072 69 HOH HOH . 
E 5 HOH A 70 1073 70 HOH HOH . 
E 5 HOH A 71 1074 71 HOH HOH . 
E 5 HOH A 72 1075 72 HOH HOH . 
E 5 HOH A 73 1076 73 HOH HOH . 
E 5 HOH A 74 1077 74 HOH HOH . 
E 5 HOH A 75 1078 75 HOH HOH . 
E 5 HOH A 76 1079 76 HOH HOH . 
E 5 HOH A 77 1080 77 HOH HOH . 
E 5 HOH A 78 1081 78 HOH HOH . 
E 5 HOH A 79 1082 79 HOH HOH . 
E 5 HOH A 80 1083 80 HOH HOH . 
E 5 HOH A 81 1084 81 HOH HOH . 
E 5 HOH A 82 1085 82 HOH HOH . 
E 5 HOH A 83 1086 83 HOH HOH . 
E 5 HOH A 84 1087 84 HOH HOH . 
E 5 HOH A 85 1088 85 HOH HOH . 
E 5 HOH A 86 1089 86 HOH HOH . 
E 5 HOH A 87 1090 87 HOH HOH . 
E 5 HOH A 88 1091 88 HOH HOH . 
E 5 HOH A 89 1092 89 HOH HOH . 
E 5 HOH A 90 1093 90 HOH HOH . 
E 5 HOH A 91 1094 91 HOH HOH . 
E 5 HOH A 92 1095 92 HOH HOH . 
E 5 HOH A 93 1096 93 HOH HOH . 
E 5 HOH A 94 1097 94 HOH HOH . 
E 5 HOH A 95 1098 95 HOH HOH . 
E 5 HOH A 96 1099 96 HOH HOH . 
E 5 HOH A 97 1100 97 HOH HOH . 
E 5 HOH A 98 1101 98 HOH HOH . 
E 5 HOH A 99 1102 99 HOH HOH . 
E 5 HOH A 100 1103 100 HOH HOH . 
E 5 HOH A 101 1104 101 HOH HOH . 
E 5 HOH A 102 1105 102 HOH HOH . 
E 5 HOH A 103 1106 103 HOH HOH . 
E 5 HOH A 104 1107 104 HOH HOH . 
E 5 HOH A 105 1108 105 HOH HOH . 
E 5 HOH A 106 1109 106 HOH HOH . 
E 5 HOH A 107 1110 107 HOH HOH . 
E 5 HOH A 108 1111 108 HOH HOH . 
E 5 HOH A 109 1112 109 HOH HOH . 
E 5 HOH A 110 1113 110 HOH HOH . 
E 5 HOH A 111 1114 111 HOH HOH . 
E 5 HOH A 112 1115 112 HOH HOH . 
E 5 HOH A 113 1116 113 HOH HOH . 
E 5 HOH A 114 1117 114 HOH HOH . 
E 5 HOH A 115 1118 115 HOH HOH . 
E 5 HOH A 116 1119 116 HOH HOH . 
E 5 HOH A 117 1120 117 HOH HOH . 
E 5 HOH A 118 1121 118 HOH HOH . 
E 5 HOH A 119 1122 119 HOH HOH . 
E 5 HOH A 120 1123 120 HOH HOH . 
E 5 HOH A 121 1124 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -34.82 16.533 -2.421 1 38.89 ? C1 GOL 1003 A 1 
HETATM 2 O O1 GOL . . . D 4 -36.067 16.658 -3.099 1 42.49 ? O1 GOL 1003 A 1 
HETATM 3 C C2 GOL . . . D 4 -33.753 16.137 -3.426 1 38.87 ? C2 GOL 1003 A 1 
HETATM 4 O O2 GOL . . . D 4 -33.664 17.141 -4.446 1 36.64 ? O2 GOL 1003 A 1 
HETATM 5 C C3 GOL . . . D 4 -32.411 15.995 -2.717 1 36.89 ? C3 GOL 1003 A 1 
HETATM 6 O O3 GOL . . . D 4 -31.421 15.606 -3.667 1 36.6 ? O3 GOL 1003 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#