data_2QHK # _model_server_result.job_id Xh4wnBm4ogbYlNsxI48wyQ _model_server_result.datetime_utc '2025-07-14 10:58:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qhk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":175}' # _entry.id 2QHK # _exptl.entry_id 2QHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QHK _cell.length_a 112.268 _cell.length_b 112.268 _cell.length_c 62.731 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 56.134 56.134 31.3655 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 28 A TYR 28 1_555 A N MSE 29 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C MSE 29 A MSE 29 1_555 A N MSE 30 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 30 A MSE 30 1_555 A N MSE 31 A MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 31 A MSE 31 1_555 A N GLY 32 A GLY 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C ALA 58 A ALA 58 1_555 A N MSE 59 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 59 A MSE 59 1_555 A N ARG 60 A ARG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2QHK _atom_sites.fract_transf_matrix[1][1] 0.008907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 175 1 GOL GOL . C 3 HOH A 1 176 2 HOH HOH . C 3 HOH A 2 177 3 HOH HOH . C 3 HOH A 3 178 4 HOH HOH . C 3 HOH A 4 179 5 HOH HOH . C 3 HOH A 5 180 6 HOH HOH . C 3 HOH A 6 181 7 HOH HOH . C 3 HOH A 7 182 8 HOH HOH . C 3 HOH A 8 183 9 HOH HOH . C 3 HOH A 9 184 10 HOH HOH . C 3 HOH A 10 185 11 HOH HOH . C 3 HOH A 11 186 12 HOH HOH . C 3 HOH A 12 187 13 HOH HOH . C 3 HOH A 13 188 14 HOH HOH . C 3 HOH A 14 189 15 HOH HOH . C 3 HOH A 15 190 16 HOH HOH . C 3 HOH A 16 191 17 HOH HOH . C 3 HOH A 17 192 18 HOH HOH . C 3 HOH A 18 193 19 HOH HOH . C 3 HOH A 19 194 20 HOH HOH . C 3 HOH A 20 195 21 HOH HOH . C 3 HOH A 21 196 22 HOH HOH . C 3 HOH A 22 197 23 HOH HOH . C 3 HOH A 23 198 24 HOH HOH . C 3 HOH A 24 199 25 HOH HOH . C 3 HOH A 25 200 26 HOH HOH . C 3 HOH A 26 201 27 HOH HOH . C 3 HOH A 27 202 28 HOH HOH . C 3 HOH A 28 203 29 HOH HOH . C 3 HOH A 29 204 30 HOH HOH . C 3 HOH A 30 205 31 HOH HOH . C 3 HOH A 31 206 32 HOH HOH . C 3 HOH A 32 207 33 HOH HOH . C 3 HOH A 33 208 34 HOH HOH . C 3 HOH A 34 209 35 HOH HOH . C 3 HOH A 35 210 36 HOH HOH . C 3 HOH A 36 211 37 HOH HOH . C 3 HOH A 37 212 38 HOH HOH . C 3 HOH A 38 213 39 HOH HOH . C 3 HOH A 39 214 40 HOH HOH . C 3 HOH A 40 215 41 HOH HOH . C 3 HOH A 41 216 42 HOH HOH . C 3 HOH A 42 217 43 HOH HOH . C 3 HOH A 43 218 44 HOH HOH . C 3 HOH A 44 219 45 HOH HOH . C 3 HOH A 45 220 46 HOH HOH . C 3 HOH A 46 221 47 HOH HOH . C 3 HOH A 47 222 48 HOH HOH . C 3 HOH A 48 223 49 HOH HOH . C 3 HOH A 49 224 50 HOH HOH . C 3 HOH A 50 225 51 HOH HOH . C 3 HOH A 51 226 52 HOH HOH . C 3 HOH A 52 227 53 HOH HOH . C 3 HOH A 53 228 54 HOH HOH . C 3 HOH A 54 229 55 HOH HOH . C 3 HOH A 55 230 56 HOH HOH . C 3 HOH A 56 231 57 HOH HOH . C 3 HOH A 57 232 58 HOH HOH . C 3 HOH A 58 233 59 HOH HOH . C 3 HOH A 59 234 60 HOH HOH . C 3 HOH A 60 235 61 HOH HOH . C 3 HOH A 61 236 62 HOH HOH . C 3 HOH A 62 237 63 HOH HOH . C 3 HOH A 63 238 64 HOH HOH . C 3 HOH A 64 239 65 HOH HOH . C 3 HOH A 65 240 66 HOH HOH . C 3 HOH A 66 241 67 HOH HOH . C 3 HOH A 67 242 68 HOH HOH . C 3 HOH A 68 243 69 HOH HOH . C 3 HOH A 69 244 70 HOH HOH . C 3 HOH A 70 245 71 HOH HOH . C 3 HOH A 71 246 72 HOH HOH . C 3 HOH A 72 247 73 HOH HOH . C 3 HOH A 73 248 74 HOH HOH . C 3 HOH A 74 249 75 HOH HOH . C 3 HOH A 75 250 76 HOH HOH . C 3 HOH A 76 251 77 HOH HOH . C 3 HOH A 77 252 78 HOH HOH . C 3 HOH A 78 253 79 HOH HOH . C 3 HOH A 79 254 80 HOH HOH . C 3 HOH A 80 255 81 HOH HOH . C 3 HOH A 81 256 82 HOH HOH . C 3 HOH A 82 257 83 HOH HOH . C 3 HOH A 83 258 84 HOH HOH . C 3 HOH A 84 259 85 HOH HOH . C 3 HOH A 85 260 86 HOH HOH . C 3 HOH A 86 261 87 HOH HOH . C 3 HOH A 87 262 88 HOH HOH . C 3 HOH A 88 263 89 HOH HOH . C 3 HOH A 89 264 90 HOH HOH . C 3 HOH A 90 265 91 HOH HOH . C 3 HOH A 91 266 92 HOH HOH . C 3 HOH A 92 267 93 HOH HOH . C 3 HOH A 93 268 94 HOH HOH . C 3 HOH A 94 269 95 HOH HOH . C 3 HOH A 95 270 96 HOH HOH . C 3 HOH A 96 271 98 HOH HOH . C 3 HOH A 97 272 99 HOH HOH . C 3 HOH A 98 273 100 HOH HOH . C 3 HOH A 99 274 101 HOH HOH . C 3 HOH A 100 275 102 HOH HOH . C 3 HOH A 101 276 103 HOH HOH . C 3 HOH A 102 277 104 HOH HOH . C 3 HOH A 103 278 105 HOH HOH . C 3 HOH A 104 279 106 HOH HOH . C 3 HOH A 105 280 107 HOH HOH . C 3 HOH A 106 281 108 HOH HOH . C 3 HOH A 107 282 109 HOH HOH . C 3 HOH A 108 283 110 HOH HOH . C 3 HOH A 109 284 111 HOH HOH . C 3 HOH A 110 285 112 HOH HOH . C 3 HOH A 111 286 113 HOH HOH . C 3 HOH A 112 287 114 HOH HOH . C 3 HOH A 113 288 115 HOH HOH . C 3 HOH A 114 289 116 HOH HOH . C 3 HOH A 115 290 117 HOH HOH . C 3 HOH A 116 291 118 HOH HOH . C 3 HOH A 117 292 119 HOH HOH . C 3 HOH A 118 293 120 HOH HOH . C 3 HOH A 119 294 121 HOH HOH . C 3 HOH A 120 295 122 HOH HOH . C 3 HOH A 121 296 123 HOH HOH . C 3 HOH A 122 297 124 HOH HOH . C 3 HOH A 123 298 125 HOH HOH . C 3 HOH A 124 299 126 HOH HOH . C 3 HOH A 125 300 127 HOH HOH . C 3 HOH A 126 301 128 HOH HOH . C 3 HOH A 127 302 129 HOH HOH . C 3 HOH A 128 303 130 HOH HOH . C 3 HOH A 129 304 131 HOH HOH . C 3 HOH A 130 305 132 HOH HOH . C 3 HOH A 131 306 133 HOH HOH . C 3 HOH A 132 307 134 HOH HOH . C 3 HOH A 133 308 135 HOH HOH . C 3 HOH A 134 309 136 HOH HOH . C 3 HOH A 135 310 137 HOH HOH . C 3 HOH A 136 311 138 HOH HOH . C 3 HOH A 137 312 140 HOH HOH . C 3 HOH A 138 313 142 HOH HOH . C 3 HOH A 139 314 143 HOH HOH . C 3 HOH A 140 315 145 HOH HOH . C 3 HOH A 141 316 146 HOH HOH . C 3 HOH A 142 317 147 HOH HOH . C 3 HOH A 143 318 148 HOH HOH . C 3 HOH A 144 319 149 HOH HOH . C 3 HOH A 145 320 150 HOH HOH . C 3 HOH A 146 321 151 HOH HOH . C 3 HOH A 147 322 152 HOH HOH . C 3 HOH A 148 323 153 HOH HOH . C 3 HOH A 149 324 154 HOH HOH . C 3 HOH A 150 325 155 HOH HOH . C 3 HOH A 151 326 156 HOH HOH . C 3 HOH A 152 327 157 HOH HOH . C 3 HOH A 153 328 158 HOH HOH . C 3 HOH A 154 329 159 HOH HOH . C 3 HOH A 155 330 160 HOH HOH . C 3 HOH A 156 331 161 HOH HOH . C 3 HOH A 157 332 162 HOH HOH . C 3 HOH A 158 333 163 HOH HOH . C 3 HOH A 159 334 164 HOH HOH . C 3 HOH A 160 335 165 HOH HOH . C 3 HOH A 161 336 166 HOH HOH . C 3 HOH A 162 337 167 HOH HOH . C 3 HOH A 163 338 168 HOH HOH . C 3 HOH A 164 339 169 HOH HOH . C 3 HOH A 165 340 170 HOH HOH . C 3 HOH A 166 341 171 HOH HOH . C 3 HOH A 167 342 172 HOH HOH . C 3 HOH A 168 343 173 HOH HOH . C 3 HOH A 169 344 174 HOH HOH . C 3 HOH A 170 345 175 HOH HOH . C 3 HOH A 171 346 176 HOH HOH . C 3 HOH A 172 347 177 HOH HOH . C 3 HOH A 173 348 178 HOH HOH . C 3 HOH A 174 349 179 HOH HOH . C 3 HOH A 175 350 180 HOH HOH . C 3 HOH A 176 351 181 HOH HOH . C 3 HOH A 177 352 182 HOH HOH . C 3 HOH A 178 353 183 HOH HOH . C 3 HOH A 179 354 184 HOH HOH . C 3 HOH A 180 355 185 HOH HOH . C 3 HOH A 181 356 186 HOH HOH . C 3 HOH A 182 357 187 HOH HOH . C 3 HOH A 183 358 188 HOH HOH . C 3 HOH A 184 359 189 HOH HOH . C 3 HOH A 185 360 190 HOH HOH . C 3 HOH A 186 361 191 HOH HOH . C 3 HOH A 187 362 192 HOH HOH . C 3 HOH A 188 363 193 HOH HOH . C 3 HOH A 189 364 194 HOH HOH . C 3 HOH A 190 365 195 HOH HOH . C 3 HOH A 191 366 196 HOH HOH . C 3 HOH A 192 367 197 HOH HOH . C 3 HOH A 193 368 198 HOH HOH . C 3 HOH A 194 369 199 HOH HOH . C 3 HOH A 195 370 200 HOH HOH . C 3 HOH A 196 371 201 HOH HOH . C 3 HOH A 197 372 202 HOH HOH . C 3 HOH A 198 373 204 HOH HOH . C 3 HOH A 199 374 205 HOH HOH . C 3 HOH A 200 375 206 HOH HOH . C 3 HOH A 201 376 207 HOH HOH . C 3 HOH A 202 377 208 HOH HOH . C 3 HOH A 203 378 209 HOH HOH . C 3 HOH A 204 379 210 HOH HOH . C 3 HOH A 205 380 211 HOH HOH . C 3 HOH A 206 381 212 HOH HOH . C 3 HOH A 207 382 213 HOH HOH . C 3 HOH A 208 383 214 HOH HOH . C 3 HOH A 209 384 215 HOH HOH . C 3 HOH A 210 385 216 HOH HOH . C 3 HOH A 211 386 217 HOH HOH . C 3 HOH A 212 387 218 HOH HOH . C 3 HOH A 213 388 219 HOH HOH . C 3 HOH A 214 389 220 HOH HOH . C 3 HOH A 215 390 221 HOH HOH . C 3 HOH A 216 391 222 HOH HOH . C 3 HOH A 217 392 223 HOH HOH . C 3 HOH A 218 393 224 HOH HOH . C 3 HOH A 219 394 225 HOH HOH . C 3 HOH A 220 395 226 HOH HOH . C 3 HOH A 221 396 227 HOH HOH . C 3 HOH A 222 397 228 HOH HOH . C 3 HOH A 223 398 229 HOH HOH . C 3 HOH A 224 399 230 HOH HOH . C 3 HOH A 225 400 231 HOH HOH . C 3 HOH A 226 401 232 HOH HOH . C 3 HOH A 227 402 233 HOH HOH . C 3 HOH A 228 403 234 HOH HOH . C 3 HOH A 229 404 235 HOH HOH . C 3 HOH A 230 405 236 HOH HOH . C 3 HOH A 231 406 237 HOH HOH . C 3 HOH A 232 407 238 HOH HOH . C 3 HOH A 233 408 239 HOH HOH . C 3 HOH A 234 409 240 HOH HOH . C 3 HOH A 235 410 241 HOH HOH . C 3 HOH A 236 411 242 HOH HOH . C 3 HOH A 237 412 243 HOH HOH . C 3 HOH A 238 413 244 HOH HOH . C 3 HOH A 239 414 245 HOH HOH . C 3 HOH A 240 415 246 HOH HOH . C 3 HOH A 241 416 247 HOH HOH . C 3 HOH A 242 417 248 HOH HOH . C 3 HOH A 243 418 249 HOH HOH . C 3 HOH A 244 419 250 HOH HOH . C 3 HOH A 245 420 251 HOH HOH . C 3 HOH A 246 421 252 HOH HOH . C 3 HOH A 247 422 253 HOH HOH . C 3 HOH A 248 423 254 HOH HOH . C 3 HOH A 249 424 255 HOH HOH . C 3 HOH A 250 425 256 HOH HOH . C 3 HOH A 251 426 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 41.099 38.006 19.242 1 24.98 ? C1 GOL 175 A 1 HETATM 2 O O1 GOL . . . B 2 42.413 37.949 19.447 1 36.56 ? O1 GOL 175 A 1 HETATM 3 C C2 GOL . . . B 2 40.817 39.317 19.795 1 25.89 ? C2 GOL 175 A 1 HETATM 4 O O2 GOL . . . B 2 39.761 39.212 20.563 1 18.31 ? O2 GOL 175 A 1 HETATM 5 C C3 GOL . . . B 2 41.015 40.393 18.719 1 21.48 ? C3 GOL 175 A 1 HETATM 6 O O3 GOL . . . B 2 40.103 41.299 18.895 1 14.4 ? O3 GOL 175 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #