data_2QIR
#
_model_server_result.job_id            NulkebhejWXBWTemJ8iynw 
_model_server_result.datetime_utc      '2024-11-13 20:23:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qir 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    2QIR 
#
_exptl.entry_id    2QIR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              483.514 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2QIR 
_cell.length_a            57.404 
_cell.length_b            57.404 
_cell.length_c            145.57 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QIR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H37 N5 O10' 
_chem_comp.formula_weight    483.514 
_chem_comp.id                9CS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Kanamycin B;Bekanamycin' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O5 9CS sing 1 n n 
C1 O9 9CS sing 2 n n 
C1 C2 9CS sing 3 n n 
C1 H1 9CS sing 4 n n 
C2 C3 9CS sing 5 n n 
C2 N6 9CS sing 6 n n 
C2 H2 9CS sing 7 n n 
C3 C4 9CS sing 8 n n 
C3 O7 9CS sing 9 n n 
C3 H3 9CS sing 10 n n 
C4 C5 9CS sing 11 n n 
C4 O8 9CS sing 12 n n 
C4 H4 9CS sing 13 n n 
C5 C6 9CS sing 14 n n 
C5 O5 9CS sing 15 n n 
C5 H5 9CS sing 16 n n 
C6 N1 9CS sing 17 n n 
C6 H61 9CS sing 18 n n 
C6 H62 9CS sing 19 n n 
C7 C12 9CS sing 20 n n 
C7 N3 9CS sing 21 n n 
C7 C8 9CS sing 22 n n 
C7 H7 9CS sing 23 n n 
C8 C9 9CS sing 24 n n 
C8 O11 9CS sing 25 n n 
C8 H8 9CS sing 26 n n 
C9 C10 9CS sing 27 n n 
C9 O10 9CS sing 28 n n 
C9 H9 9CS sing 29 n n 
C10 C11 9CS sing 30 n n 
C10 O9 9CS sing 31 n n 
C10 H10 9CS sing 32 n n 
C11 N2 9CS sing 33 n n 
C11 C12 9CS sing 34 n n 
C11 H11 9CS sing 35 n n 
C12 H121 9CS sing 36 n n 
C12 H122 9CS sing 37 n n 
C13 O11 9CS sing 38 n n 
C13 C14 9CS sing 39 n n 
C13 O12 9CS sing 40 n n 
C13 H13 9CS sing 41 n n 
C14 O13 9CS sing 42 n n 
C14 C15 9CS sing 43 n n 
C14 H14 9CS sing 44 n n 
C15 N4 9CS sing 45 n n 
C15 C16 9CS sing 46 n n 
C15 H15 9CS sing 47 n n 
C16 C17 9CS sing 48 n n 
C16 O14 9CS sing 49 n n 
C16 H16 9CS sing 50 n n 
C17 O12 9CS sing 51 n n 
C17 C18 9CS sing 52 n n 
C17 H17 9CS sing 53 n n 
C18 O15 9CS sing 54 n n 
C18 H181 9CS sing 55 n n 
C18 H182 9CS sing 56 n n 
N1 HN11 9CS sing 57 n n 
N1 HN12 9CS sing 58 n n 
N2 HN21 9CS sing 59 n n 
N2 HN22 9CS sing 60 n n 
N3 HN31 9CS sing 61 n n 
N3 HN32 9CS sing 62 n n 
N4 HN41 9CS sing 63 n n 
N4 HN42 9CS sing 64 n n 
O7 HO7 9CS sing 65 n n 
O8 HO8 9CS sing 66 n n 
O10 HO10 9CS sing 67 n n 
O13 HO13 9CS sing 68 n n 
O14 HO14 9CS sing 69 n n 
O15 HO15 9CS sing 70 n n 
N6 HN61 9CS sing 71 n n 
N6 HN62 9CS sing 72 n n 
#
_atom_sites.entry_id                     2QIR 
_atom_sites.fract_transf_matrix[1][1]    0.01742 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01742 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00687 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 COA A 1 197 1 COA COA . 
C 3 9CS A 1 501 501 9CS 9CS . 
D 4 HOH A 1 502 1 HOH HOH . 
D 4 HOH A 2 503 2 HOH HOH . 
D 4 HOH A 3 504 3 HOH HOH . 
D 4 HOH A 4 505 4 HOH HOH . 
D 4 HOH A 5 506 5 HOH HOH . 
D 4 HOH A 6 507 7 HOH HOH . 
D 4 HOH A 7 508 8 HOH HOH . 
D 4 HOH A 8 509 9 HOH HOH . 
D 4 HOH A 9 510 10 HOH HOH . 
D 4 HOH A 10 511 11 HOH HOH . 
D 4 HOH A 11 512 12 HOH HOH . 
D 4 HOH A 12 513 13 HOH HOH . 
D 4 HOH A 13 514 14 HOH HOH . 
D 4 HOH A 14 515 15 HOH HOH . 
D 4 HOH A 15 516 16 HOH HOH . 
D 4 HOH A 16 517 17 HOH HOH . 
D 4 HOH A 17 518 18 HOH HOH . 
D 4 HOH A 18 519 19 HOH HOH . 
D 4 HOH A 19 520 20 HOH HOH . 
D 4 HOH A 20 521 22 HOH HOH . 
D 4 HOH A 21 522 23 HOH HOH . 
D 4 HOH A 22 523 24 HOH HOH . 
D 4 HOH A 23 524 25 HOH HOH . 
D 4 HOH A 24 525 26 HOH HOH . 
D 4 HOH A 25 526 27 HOH HOH . 
D 4 HOH A 26 527 28 HOH HOH . 
D 4 HOH A 27 528 29 HOH HOH . 
D 4 HOH A 28 529 30 HOH HOH . 
D 4 HOH A 29 530 31 HOH HOH . 
D 4 HOH A 30 531 32 HOH HOH . 
D 4 HOH A 31 532 33 HOH HOH . 
D 4 HOH A 32 533 34 HOH HOH . 
D 4 HOH A 33 534 36 HOH HOH . 
D 4 HOH A 34 535 39 HOH HOH . 
D 4 HOH A 35 536 40 HOH HOH . 
D 4 HOH A 36 537 41 HOH HOH . 
D 4 HOH A 37 538 43 HOH HOH . 
D 4 HOH A 38 539 44 HOH HOH . 
D 4 HOH A 39 540 46 HOH HOH . 
D 4 HOH A 40 541 47 HOH HOH . 
D 4 HOH A 41 542 48 HOH HOH . 
D 4 HOH A 42 543 49 HOH HOH . 
D 4 HOH A 43 544 54 HOH HOH . 
D 4 HOH A 44 545 55 HOH HOH . 
D 4 HOH A 45 546 56 HOH HOH . 
D 4 HOH A 46 547 59 HOH HOH . 
D 4 HOH A 47 548 60 HOH HOH . 
D 4 HOH A 48 549 61 HOH HOH . 
D 4 HOH A 49 550 62 HOH HOH . 
D 4 HOH A 50 551 63 HOH HOH . 
D 4 HOH A 51 552 64 HOH HOH . 
D 4 HOH A 52 553 65 HOH HOH . 
D 4 HOH A 53 554 66 HOH HOH . 
D 4 HOH A 54 555 68 HOH HOH . 
D 4 HOH A 55 556 69 HOH HOH . 
D 4 HOH A 56 557 70 HOH HOH . 
D 4 HOH A 57 558 71 HOH HOH . 
D 4 HOH A 58 559 72 HOH HOH . 
D 4 HOH A 59 560 73 HOH HOH . 
D 4 HOH A 60 561 74 HOH HOH . 
D 4 HOH A 61 562 75 HOH HOH . 
D 4 HOH A 62 563 76 HOH HOH . 
D 4 HOH A 63 564 77 HOH HOH . 
D 4 HOH A 64 565 79 HOH HOH . 
D 4 HOH A 65 566 80 HOH HOH . 
D 4 HOH A 66 567 82 HOH HOH . 
D 4 HOH A 67 568 83 HOH HOH . 
D 4 HOH A 68 569 85 HOH HOH . 
D 4 HOH A 69 570 87 HOH HOH . 
D 4 HOH A 70 571 88 HOH HOH . 
D 4 HOH A 71 572 89 HOH HOH . 
D 4 HOH A 72 573 92 HOH HOH . 
D 4 HOH A 73 574 93 HOH HOH . 
D 4 HOH A 74 575 94 HOH HOH . 
D 4 HOH A 75 576 95 HOH HOH . 
D 4 HOH A 76 577 96 HOH HOH . 
D 4 HOH A 77 578 98 HOH HOH . 
D 4 HOH A 78 579 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 9CS . . . C 3 9.365 13.687 -11.57 1 33.76 ? C1 9CS 501 A 1 
HETATM 2 C C2 9CS . . . C 3 8.713 13.162 -10.272 1 34.86 ? C2 9CS 501 A 1 
HETATM 3 C C3 9CS . . . C 3 8.704 11.618 -10.27 1 35.11 ? C3 9CS 501 A 1 
HETATM 4 C C4 9CS . . . C 3 7.982 11.076 -11.513 1 34.6 ? C4 9CS 501 A 1 
HETATM 5 C C5 9CS . . . C 3 8.557 11.742 -12.77 1 34.09 ? C5 9CS 501 A 1 
HETATM 6 C C6 9CS . . . C 3 7.642 11.35 -13.914 1 34.28 ? C6 9CS 501 A 1 
HETATM 7 C C7 9CS . . . C 3 14.299 15.251 -13.019 1 32.7 ? C7 9CS 501 A 1 
HETATM 8 C C8 9CS . . . C 3 13.28 16.114 -12.248 1 34.11 ? C8 9CS 501 A 1 
HETATM 9 C C9 9CS . . . C 3 12.205 15.241 -11.551 1 34.22 ? C9 9CS 501 A 1 
HETATM 10 C C10 9CS . . . C 3 11.583 14.184 -12.493 1 33.86 ? C10 9CS 501 A 1 
HETATM 11 C C11 9CS . . . C 3 12.649 13.41 -13.303 1 33.21 ? C11 9CS 501 A 1 
HETATM 12 C C12 9CS . . . C 3 13.604 14.354 -14.042 1 32.31 ? C12 9CS 501 A 1 
HETATM 13 C C13 9CS . . . C 3 13.688 18.146 -11.039 1 38.78 ? C13 9CS 501 A 1 
HETATM 14 C C14 9CS . . . C 3 14.995 18.909 -10.771 1 38.34 ? C14 9CS 501 A 1 
HETATM 15 C C15 9CS . . . C 3 15.678 18.369 -9.51 1 38.84 ? C15 9CS 501 A 1 
HETATM 16 C C16 9CS . . . C 3 14.738 18.401 -8.287 1 40.42 ? C16 9CS 501 A 1 
HETATM 17 C C17 9CS . . . C 3 13.314 17.876 -8.625 1 40.91 ? C17 9CS 501 A 1 
HETATM 18 C C18 9CS . . . C 3 12.283 18.255 -7.542 1 41.88 ? C18 9CS 501 A 1 
HETATM 19 N N1 9CS . . . C 3 8.428 11.257 -15.145 1 34.65 ? N1 9CS 501 A 1 
HETATM 20 N N2 9CS . . . C 3 12.006 12.546 -14.299 1 33.52 ? N2 9CS 501 A 1 
HETATM 21 N N3 9CS . . . C 3 15.328 16.065 -13.67 1 30.83 ? N3 9CS 501 A 1 
HETATM 22 N N4 9CS . . . C 3 16.873 19.166 -9.211 1 38.82 ? N4 9CS 501 A 1 
HETATM 23 O O5 9CS . . . C 3 8.594 13.199 -12.671 1 32.94 ? O5 9CS 501 A 1 
HETATM 24 O O7 9CS . . . C 3 8.093 11.125 -9.086 1 35.96 ? O7 9CS 501 A 1 
HETATM 25 O O8 9CS . . . C 3 8.14 9.659 -11.615 1 34.58 ? O8 9CS 501 A 1 
HETATM 26 O O9 9CS . . . C 3 10.776 13.272 -11.705 1 34.12 ? O9 9CS 501 A 1 
HETATM 27 O O10 9CS . . . C 3 11.167 16.068 -11.015 1 32.14 ? O10 9CS 501 A 1 
HETATM 28 O O11 9CS . . . C 3 14.013 16.744 -11.218 1 36.74 ? O11 9CS 501 A 1 
HETATM 29 O O12 9CS . . . C 3 12.767 18.358 -9.92 1 39.56 ? O12 9CS 501 A 1 
HETATM 30 O O13 9CS . . . C 3 15.857 18.788 -11.908 1 38.9 ? O13 9CS 501 A 1 
HETATM 31 O O14 9CS . . . C 3 15.333 17.655 -7.201 1 40.41 ? O14 9CS 501 A 1 
HETATM 32 O O15 9CS . . . C 3 11.367 17.165 -7.399 1 41.88 ? O15 9CS 501 A 1 
HETATM 33 N N6 9CS . . . C 3 9.406 13.653 -9.112 1 35.18 ? N6 9CS 501 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           33 
#