data_2QIS # _model_server_result.job_id 1OGRCWDcrzfipNmVziiDUQ _model_server_result.datetime_utc '2024-11-25 08:55:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 2QIS # _exptl.entry_id 2QIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.112 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QIS _cell.length_a 111.47 _cell.length_b 111.47 _cell.length_c 67.603 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 124 A ASP 117 1_555 B MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 A OD1 ASP 124 A ASP 117 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc3 A OD2 ASP 128 A ASP 121 1_555 B MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc4 A OD2 ASP 128 A ASP 121 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 A OD2 ASP 264 A ASP 257 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc6 E O15 RIS . A RIS 901 1_555 B MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc7 E O12 RIS . A RIS 901 1_555 B MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc8 E O16 RIS . A RIS 901 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc9 E O11 RIS . A RIS 901 1_555 C MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc10 E O15 RIS . A RIS 901 1_555 D MG MG . A MG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc11 B MG MG . A MG 907 1_555 F O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc12 B MG MG . A MG 907 1_555 F O HOH . A HOH 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc13 C MG MG . A MG 908 1_555 F O HOH . A HOH 1039 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc14 C MG MG . A MG 908 1_555 F O HOH . A HOH 1040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc15 C MG MG . A MG 908 1_555 F O HOH . A HOH 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc16 D MG MG . A MG 909 1_555 F O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc17 D MG MG . A MG 909 1_555 F O HOH . A HOH 1028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc18 D MG MG . A MG 909 1_555 F O HOH . A HOH 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C7 H11 N O7 P2' _chem_comp.formula_weight 283.112 _chem_comp.id RIS _chem_comp.mon_nstd_flag . _chem_comp.name '1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Risedronate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P9 RIS sing 277 n n O12 H12 RIS sing 278 n n P9 O11 RIS doub 279 n n P9 O10 RIS sing 280 n n P9 C8 RIS sing 281 n n C8 O13 RIS sing 282 n n C8 P14 RIS sing 283 n n C8 C7 RIS sing 284 n n O13 H13 RIS sing 285 n n P14 O16 RIS sing 286 n n P14 O15 RIS sing 287 n n P14 O17 RIS doub 288 n n O16 H16 RIS sing 289 n n O15 H15 RIS sing 290 n n C7 C2 RIS sing 291 n n C7 HC71 RIS sing 292 n n C7 HC72 RIS sing 293 n n C2 C1 RIS doub 294 n y C2 C3 RIS sing 295 n y C1 C6 RIS sing 296 n y C1 HC1 RIS sing 297 n n C6 C5 RIS doub 298 n y C6 HC6 RIS sing 299 n n C5 N4 RIS sing 300 n y C5 HC5 RIS sing 301 n n N4 C3 RIS doub 302 n y C3 HC3 RIS sing 303 n n HO1 O10 RIS sing 304 n n # _atom_sites.entry_id 2QIS _atom_sites.fract_transf_matrix[1][1] 0.008971 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 907 907 MG MG . C 2 MG A 1 908 908 MG MG . D 2 MG A 1 909 909 MG MG . E 3 RIS A 1 901 901 RIS RIS . F 4 HOH A 1 910 1 HOH HOH . F 4 HOH A 2 911 2 HOH HOH . F 4 HOH A 3 912 3 HOH HOH . F 4 HOH A 4 913 4 HOH HOH . F 4 HOH A 5 914 5 HOH HOH . F 4 HOH A 6 915 7 HOH HOH . F 4 HOH A 7 916 8 HOH HOH . F 4 HOH A 8 917 9 HOH HOH . F 4 HOH A 9 918 11 HOH HOH . F 4 HOH A 10 919 12 HOH HOH . F 4 HOH A 11 920 13 HOH HOH . F 4 HOH A 12 921 14 HOH HOH . F 4 HOH A 13 922 15 HOH HOH . F 4 HOH A 14 923 18 HOH HOH . F 4 HOH A 15 924 19 HOH HOH . F 4 HOH A 16 925 20 HOH HOH . F 4 HOH A 17 926 21 HOH HOH . F 4 HOH A 18 927 22 HOH HOH . F 4 HOH A 19 928 23 HOH HOH . F 4 HOH A 20 929 24 HOH HOH . F 4 HOH A 21 930 27 HOH HOH . F 4 HOH A 22 931 28 HOH HOH . F 4 HOH A 23 932 29 HOH HOH . F 4 HOH A 24 933 30 HOH HOH . F 4 HOH A 25 934 31 HOH HOH . F 4 HOH A 26 935 32 HOH HOH . F 4 HOH A 27 936 33 HOH HOH . F 4 HOH A 28 937 34 HOH HOH . F 4 HOH A 29 938 37 HOH HOH . F 4 HOH A 30 939 38 HOH HOH . F 4 HOH A 31 940 39 HOH HOH . F 4 HOH A 32 941 42 HOH HOH . F 4 HOH A 33 942 43 HOH HOH . F 4 HOH A 34 943 44 HOH HOH . F 4 HOH A 35 944 45 HOH HOH . F 4 HOH A 36 945 46 HOH HOH . F 4 HOH A 37 946 47 HOH HOH . F 4 HOH A 38 947 49 HOH HOH . F 4 HOH A 39 948 50 HOH HOH . F 4 HOH A 40 949 51 HOH HOH . F 4 HOH A 41 950 52 HOH HOH . F 4 HOH A 42 951 53 HOH HOH . F 4 HOH A 43 952 54 HOH HOH . F 4 HOH A 44 953 55 HOH HOH . F 4 HOH A 45 954 56 HOH HOH . F 4 HOH A 46 955 57 HOH HOH . F 4 HOH A 47 956 58 HOH HOH . F 4 HOH A 48 957 59 HOH HOH . F 4 HOH A 49 958 60 HOH HOH . F 4 HOH A 50 959 61 HOH HOH . F 4 HOH A 51 960 63 HOH HOH . F 4 HOH A 52 961 64 HOH HOH . F 4 HOH A 53 962 65 HOH HOH . F 4 HOH A 54 963 66 HOH HOH . F 4 HOH A 55 964 68 HOH HOH . F 4 HOH A 56 965 70 HOH HOH . F 4 HOH A 57 966 71 HOH HOH . F 4 HOH A 58 967 72 HOH HOH . F 4 HOH A 59 968 75 HOH HOH . F 4 HOH A 60 969 76 HOH HOH . F 4 HOH A 61 970 77 HOH HOH . F 4 HOH A 62 971 78 HOH HOH . F 4 HOH A 63 972 80 HOH HOH . F 4 HOH A 64 973 81 HOH HOH . F 4 HOH A 65 974 82 HOH HOH . F 4 HOH A 66 975 83 HOH HOH . F 4 HOH A 67 976 84 HOH HOH . F 4 HOH A 68 977 85 HOH HOH . F 4 HOH A 69 978 86 HOH HOH . F 4 HOH A 70 979 87 HOH HOH . F 4 HOH A 71 980 91 HOH HOH . F 4 HOH A 72 981 92 HOH HOH . F 4 HOH A 73 982 94 HOH HOH . F 4 HOH A 74 983 95 HOH HOH . F 4 HOH A 75 984 96 HOH HOH . F 4 HOH A 76 985 99 HOH HOH . F 4 HOH A 77 986 102 HOH HOH . F 4 HOH A 78 987 103 HOH HOH . F 4 HOH A 79 988 105 HOH HOH . F 4 HOH A 80 989 106 HOH HOH . F 4 HOH A 81 990 107 HOH HOH . F 4 HOH A 82 991 109 HOH HOH . F 4 HOH A 83 992 110 HOH HOH . F 4 HOH A 84 993 111 HOH HOH . F 4 HOH A 85 994 112 HOH HOH . F 4 HOH A 86 995 113 HOH HOH . F 4 HOH A 87 996 114 HOH HOH . F 4 HOH A 88 997 115 HOH HOH . F 4 HOH A 89 998 116 HOH HOH . F 4 HOH A 90 999 118 HOH HOH . F 4 HOH A 91 1000 120 HOH HOH . F 4 HOH A 92 1001 121 HOH HOH . F 4 HOH A 93 1002 123 HOH HOH . F 4 HOH A 94 1003 125 HOH HOH . F 4 HOH A 95 1004 127 HOH HOH . F 4 HOH A 96 1005 128 HOH HOH . F 4 HOH A 97 1006 129 HOH HOH . F 4 HOH A 98 1007 130 HOH HOH . F 4 HOH A 99 1008 131 HOH HOH . F 4 HOH A 100 1009 133 HOH HOH . F 4 HOH A 101 1010 135 HOH HOH . F 4 HOH A 102 1011 136 HOH HOH . F 4 HOH A 103 1012 137 HOH HOH . F 4 HOH A 104 1013 138 HOH HOH . F 4 HOH A 105 1014 139 HOH HOH . F 4 HOH A 106 1015 140 HOH HOH . F 4 HOH A 107 1016 141 HOH HOH . F 4 HOH A 108 1017 142 HOH HOH . F 4 HOH A 109 1018 143 HOH HOH . F 4 HOH A 110 1019 144 HOH HOH . F 4 HOH A 111 1020 146 HOH HOH . F 4 HOH A 112 1021 147 HOH HOH . F 4 HOH A 113 1022 148 HOH HOH . F 4 HOH A 114 1023 149 HOH HOH . F 4 HOH A 115 1024 150 HOH HOH . F 4 HOH A 116 1025 152 HOH HOH . F 4 HOH A 117 1026 153 HOH HOH . F 4 HOH A 118 1027 154 HOH HOH . F 4 HOH A 119 1028 155 HOH HOH . F 4 HOH A 120 1029 156 HOH HOH . F 4 HOH A 121 1030 157 HOH HOH . F 4 HOH A 122 1031 158 HOH HOH . F 4 HOH A 123 1032 159 HOH HOH . F 4 HOH A 124 1033 160 HOH HOH . F 4 HOH A 125 1034 161 HOH HOH . F 4 HOH A 126 1035 162 HOH HOH . F 4 HOH A 127 1036 163 HOH HOH . F 4 HOH A 128 1037 165 HOH HOH . F 4 HOH A 129 1038 167 HOH HOH . F 4 HOH A 130 1039 168 HOH HOH . F 4 HOH A 131 1040 169 HOH HOH . F 4 HOH A 132 1041 170 HOH HOH . F 4 HOH A 133 1042 173 HOH HOH . F 4 HOH A 134 1043 174 HOH HOH . F 4 HOH A 135 1044 175 HOH HOH . F 4 HOH A 136 1045 178 HOH HOH . F 4 HOH A 137 1046 180 HOH HOH . F 4 HOH A 138 1047 182 HOH HOH . F 4 HOH A 139 1048 183 HOH HOH . F 4 HOH A 140 1049 184 HOH HOH . F 4 HOH A 141 1050 185 HOH HOH . F 4 HOH A 142 1051 186 HOH HOH . F 4 HOH A 143 1052 187 HOH HOH . F 4 HOH A 144 1053 189 HOH HOH . F 4 HOH A 145 1054 192 HOH HOH . F 4 HOH A 146 1055 195 HOH HOH . F 4 HOH A 147 1056 198 HOH HOH . F 4 HOH A 148 1057 200 HOH HOH . F 4 HOH A 149 1058 201 HOH HOH . F 4 HOH A 150 1059 202 HOH HOH . F 4 HOH A 151 1060 203 HOH HOH . F 4 HOH A 152 1061 205 HOH HOH . F 4 HOH A 153 1062 206 HOH HOH . F 4 HOH A 154 1063 207 HOH HOH . F 4 HOH A 155 1064 211 HOH HOH . F 4 HOH A 156 1065 212 HOH HOH . F 4 HOH A 157 1066 213 HOH HOH . F 4 HOH A 158 1067 214 HOH HOH . F 4 HOH A 159 1068 217 HOH HOH . F 4 HOH A 160 1069 219 HOH HOH . F 4 HOH A 161 1070 220 HOH HOH . F 4 HOH A 162 1071 221 HOH HOH . F 4 HOH A 163 1072 222 HOH HOH . F 4 HOH A 164 1073 223 HOH HOH . F 4 HOH A 165 1074 224 HOH HOH . F 4 HOH A 166 1075 225 HOH HOH . F 4 HOH A 167 1076 226 HOH HOH . F 4 HOH A 168 1077 227 HOH HOH . F 4 HOH A 169 1078 228 HOH HOH . F 4 HOH A 170 1079 229 HOH HOH . F 4 HOH A 171 1080 230 HOH HOH . F 4 HOH A 172 1081 231 HOH HOH . F 4 HOH A 173 1082 232 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 RIS . . . E 3 16.958 35.79 -6.97 1 23.22 ? O12 RIS 901 A 1 HETATM 2 P P9 RIS . . . E 3 15.584 35.777 -7.608 1 24.15 ? P9 RIS 901 A 1 HETATM 3 O O11 RIS . . . E 3 15.386 36.947 -8.597 1 25.7 ? O11 RIS 901 A 1 HETATM 4 O O10 RIS . . . E 3 14.461 35.791 -6.631 1 24.68 ? O10 RIS 901 A 1 HETATM 5 C C8 RIS . . . E 3 15.354 34.239 -8.586 1 24.83 ? C8 RIS 901 A 1 HETATM 6 O O13 RIS . . . E 3 14.059 34.255 -9.23 1 23.92 ? O13 RIS 901 A 1 HETATM 7 P P14 RIS . . . E 3 16.611 34.077 -9.89 1 25.84 ? P14 RIS 901 A 1 HETATM 8 O O16 RIS . . . E 3 16.507 35.369 -10.688 1 25.95 ? O16 RIS 901 A 1 HETATM 9 O O15 RIS . . . E 3 17.927 33.913 -9.142 1 23.32 ? O15 RIS 901 A 1 HETATM 10 O O17 RIS . . . E 3 16.389 32.847 -10.762 1 24.7 ? O17 RIS 901 A 1 HETATM 11 C C7 RIS . . . E 3 15.32 33.103 -7.539 1 23.27 ? C7 RIS 901 A 1 HETATM 12 C C2 RIS . . . E 3 15.106 31.677 -8.059 1 24.68 ? C2 RIS 901 A 1 HETATM 13 C C1 RIS . . . E 3 15.854 30.695 -7.434 1 29.68 ? C1 RIS 901 A 1 HETATM 14 C C6 RIS . . . E 3 15.715 29.367 -7.828 1 31.3 ? C6 RIS 901 A 1 HETATM 15 C C5 RIS . . . E 3 14.849 29.056 -8.841 1 28.46 ? C5 RIS 901 A 1 HETATM 16 N N4 RIS . . . E 3 14.152 30.009 -9.47 1 32.17 ? N4 RIS 901 A 1 HETATM 17 C C3 RIS . . . E 3 14.245 31.299 -9.101 1 31.26 ? C3 RIS 901 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #