data_2QJU # _model_server_result.job_id YbqD1dM_rbDrCoVlLCK6dw _model_server_result.datetime_utc '2024-10-14 09:22:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":801}' # _entry.id 2QJU # _exptl.entry_id 2QJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.381 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.72 _cell.angle_gamma 90 _cell.entry_id 2QJU _cell.length_a 88.414 _cell.length_b 86.763 _cell.length_c 81.187 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 16 A GLY 20 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 A O ALA 18 A ALA 22 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc3 A O VAL 19 A VAL 23 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc4 A OD1 ASN 23 A ASN 27 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc5 A O THR 250 A THR 254 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 A OG1 THR 250 A THR 254 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc7 A OD1 ASN 282 A ASN 286 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc8 A O ALA 347 A ALA 351 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc9 A OG1 THR 350 A THR 354 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc10 A OG SER 351 A SER 355 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc11 I OXT LEU . A LEU 601 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? # _chem_comp.formula 'C18 H22 N2' _chem_comp.formula_weight 266.381 _chem_comp.id DSM _chem_comp.mon_nstd_flag . _chem_comp.name 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Desipramine;Norpramin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 N2 DSM sing 118 n n C18 H181 DSM sing 119 n n C18 H182 DSM sing 120 n n C18 H183 DSM sing 121 n n N2 C17 DSM sing 122 n n N2 HN2 DSM sing 123 n n C17 C16 DSM sing 124 n n C17 H171 DSM sing 125 n n C17 H172 DSM sing 126 n n C16 C15 DSM sing 127 n n C16 H161 DSM sing 128 n n C16 H162 DSM sing 129 n n C15 N1 DSM sing 130 n n C15 H151 DSM sing 131 n n C15 H152 DSM sing 132 n n N1 C11 DSM sing 133 n n N1 C14 DSM sing 134 n n C14 C1 DSM sing 135 n y C14 C13 DSM doub 136 n y C1 C2 DSM doub 137 n y C1 H1 DSM sing 138 n n C2 C3 DSM sing 139 n y C2 H2 DSM sing 140 n n C3 C4 DSM doub 141 n y C3 H3 DSM sing 142 n n C4 C13 DSM sing 143 n y C4 H4 DSM sing 144 n n C13 C5 DSM sing 145 n n C5 C6 DSM sing 146 n n C5 H51 DSM sing 147 n n C5 H52 DSM sing 148 n n C6 C12 DSM sing 149 n n C6 H61 DSM sing 150 n n C6 H62 DSM sing 151 n n C12 C11 DSM doub 152 n y C12 C7 DSM sing 153 n y C11 C10 DSM sing 154 n y C7 C8 DSM doub 155 n y C7 H7 DSM sing 156 n n C8 C9 DSM sing 157 n y C8 H8 DSM sing 158 n n C9 C10 DSM doub 159 n y C9 H9 DSM sing 160 n n C10 H10 DSM sing 161 n n # _atom_sites.entry_id 2QJU _atom_sites.fract_transf_matrix[1][1] 0.01131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001132 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 901 901 BOG BOG . C 2 BOG A 1 902 902 BOG BOG . D 2 BOG A 1 903 903 BOG BOG . E 2 BOG A 1 904 904 BOG BOG . F 3 NA A 1 701 701 NA NA . G 3 NA A 1 702 702 NA NA . H 4 CL A 1 703 703 CL CL . I 5 LEU A 1 601 601 LEU LEU . J 6 DSM A 1 801 801 DSM DSM . K 7 HOH A 1 1001 1001 HOH HOH . K 7 HOH A 2 1002 1002 HOH HOH . K 7 HOH A 3 1003 1003 HOH HOH . K 7 HOH A 4 1004 1004 HOH HOH . K 7 HOH A 5 1005 1005 HOH HOH . K 7 HOH A 6 1006 1006 HOH HOH . K 7 HOH A 7 1007 1007 HOH HOH . K 7 HOH A 8 1008 1008 HOH HOH . K 7 HOH A 9 1009 1009 HOH HOH . K 7 HOH A 10 1010 1010 HOH HOH . K 7 HOH A 11 1011 1011 HOH HOH . K 7 HOH A 12 1012 1012 HOH HOH . K 7 HOH A 13 1013 1013 HOH HOH . K 7 HOH A 14 1014 1014 HOH HOH . K 7 HOH A 15 1015 1015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 DSM . . . J 6 17.739 -15.329 -26.067 1 53.78 ? C18 DSM 801 A 1 HETATM 2 N N2 DSM . . . J 6 16.443 -14.535 -25.912 1 52.53 ? N2 DSM 801 A 1 HETATM 3 C C17 DSM . . . J 6 15.799 -13.781 -24.746 1 47.14 ? C17 DSM 801 A 1 HETATM 4 C C16 DSM . . . J 6 15.954 -12.234 -25.066 1 43.26 ? C16 DSM 801 A 1 HETATM 5 C C15 DSM . . . J 6 15.455 -11.086 -24.195 1 42.13 ? C15 DSM 801 A 1 HETATM 6 N N1 DSM . . . J 6 16.27 -10.633 -23.01 1 40.95 ? N1 DSM 801 A 1 HETATM 7 C C14 DSM . . . J 6 15.878 -9.53 -22.119 1 40.64 ? C14 DSM 801 A 1 HETATM 8 C C1 DSM . . . J 6 15.508 -8.276 -22.701 1 40.33 ? C1 DSM 801 A 1 HETATM 9 C C2 DSM . . . J 6 15.121 -7.141 -21.936 1 40.61 ? C2 DSM 801 A 1 HETATM 10 C C3 DSM . . . J 6 15.11 -7.142 -20.539 1 39.87 ? C3 DSM 801 A 1 HETATM 11 C C4 DSM . . . J 6 15.503 -8.453 -19.913 1 38.94 ? C4 DSM 801 A 1 HETATM 12 C C13 DSM . . . J 6 15.885 -9.554 -20.661 1 39.24 ? C13 DSM 801 A 1 HETATM 13 C C5 DSM . . . J 6 16.205 -10.703 -19.749 1 38.21 ? C5 DSM 801 A 1 HETATM 14 C C6 DSM . . . J 6 16.599 -12.014 -20.41 1 36.94 ? C6 DSM 801 A 1 HETATM 15 C C12 DSM . . . J 6 17.762 -11.862 -21.385 1 38.39 ? C12 DSM 801 A 1 HETATM 16 C C11 DSM . . . J 6 17.526 -11.194 -22.604 1 39.49 ? C11 DSM 801 A 1 HETATM 17 C C7 DSM . . . J 6 19.015 -12.373 -21.074 1 38.9 ? C7 DSM 801 A 1 HETATM 18 C C8 DSM . . . J 6 20.2 -12.244 -22.035 1 38.33 ? C8 DSM 801 A 1 HETATM 19 C C9 DSM . . . J 6 19.946 -11.577 -23.243 1 38.53 ? C9 DSM 801 A 1 HETATM 20 C C10 DSM . . . J 6 18.637 -11.095 -23.46 1 39.59 ? C10 DSM 801 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 580 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #