data_2QK4
#
_model_server_result.job_id            LjzbkOiGEj9iXutz6P5AvA 
_model_server_result.datetime_utc      '2025-03-01 19:32:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qk4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    2QK4 
#
_exptl.entry_id    2QK4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.07 
_cell.angle_gamma         90 
_cell.entry_id            2QK4 
_cell.length_a            70.28 
_cell.length_b            79.81 
_cell.length_c            113.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QK4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 J N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     2QK4 
_atom_sites.fract_transf_matrix[1][1]    0.014229 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003566 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01253 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 602 2 CL CL . 
D 3 SO4 A 1 701 1 SO4 SO4 . 
E 4 ATP A 1 501 2 ATP ATP . 
F 5 GOL A 1 803 3 GOL GOL . 
G 5 GOL A 1 804 4 GOL GOL . 
H 2 CL B 1 601 1 CL CL . 
I 3 SO4 B 1 702 2 SO4 SO4 . 
J 4 ATP B 1 501 1 ATP ATP . 
K 5 GOL B 1 801 1 GOL GOL . 
L 5 GOL B 1 802 2 GOL GOL . 
M 6 HOH A 1 805 1 HOH HOH . 
M 6 HOH A 2 806 2 HOH HOH . 
M 6 HOH A 3 807 4 HOH HOH . 
M 6 HOH A 4 808 6 HOH HOH . 
M 6 HOH A 5 809 7 HOH HOH . 
M 6 HOH A 6 810 11 HOH HOH . 
M 6 HOH A 7 811 13 HOH HOH . 
M 6 HOH A 8 812 15 HOH HOH . 
M 6 HOH A 9 813 16 HOH HOH . 
M 6 HOH A 10 814 18 HOH HOH . 
M 6 HOH A 11 815 19 HOH HOH . 
M 6 HOH A 12 816 20 HOH HOH . 
M 6 HOH A 13 817 21 HOH HOH . 
M 6 HOH A 14 818 22 HOH HOH . 
M 6 HOH A 15 819 23 HOH HOH . 
M 6 HOH A 16 820 27 HOH HOH . 
M 6 HOH A 17 821 28 HOH HOH . 
M 6 HOH A 18 822 34 HOH HOH . 
M 6 HOH A 19 823 37 HOH HOH . 
M 6 HOH A 20 824 40 HOH HOH . 
M 6 HOH A 21 825 42 HOH HOH . 
M 6 HOH A 22 826 43 HOH HOH . 
M 6 HOH A 23 827 46 HOH HOH . 
M 6 HOH A 24 828 47 HOH HOH . 
M 6 HOH A 25 829 50 HOH HOH . 
M 6 HOH A 26 830 51 HOH HOH . 
M 6 HOH A 27 831 52 HOH HOH . 
M 6 HOH A 28 832 57 HOH HOH . 
M 6 HOH A 29 833 60 HOH HOH . 
M 6 HOH A 30 834 61 HOH HOH . 
M 6 HOH A 31 835 62 HOH HOH . 
M 6 HOH A 32 836 63 HOH HOH . 
M 6 HOH A 33 837 65 HOH HOH . 
M 6 HOH A 34 838 66 HOH HOH . 
M 6 HOH A 35 839 74 HOH HOH . 
M 6 HOH A 36 840 77 HOH HOH . 
M 6 HOH A 37 841 79 HOH HOH . 
M 6 HOH A 38 842 80 HOH HOH . 
M 6 HOH A 39 843 81 HOH HOH . 
M 6 HOH A 40 844 82 HOH HOH . 
M 6 HOH A 41 845 86 HOH HOH . 
M 6 HOH A 42 846 89 HOH HOH . 
M 6 HOH A 43 847 93 HOH HOH . 
M 6 HOH A 44 848 102 HOH HOH . 
M 6 HOH A 45 849 103 HOH HOH . 
M 6 HOH A 46 850 104 HOH HOH . 
M 6 HOH A 47 851 105 HOH HOH . 
M 6 HOH A 48 852 106 HOH HOH . 
M 6 HOH A 49 853 109 HOH HOH . 
N 6 HOH B 1 803 3 HOH HOH . 
N 6 HOH B 2 804 5 HOH HOH . 
N 6 HOH B 3 805 8 HOH HOH . 
N 6 HOH B 4 806 9 HOH HOH . 
N 6 HOH B 5 807 10 HOH HOH . 
N 6 HOH B 6 808 12 HOH HOH . 
N 6 HOH B 7 809 14 HOH HOH . 
N 6 HOH B 8 810 17 HOH HOH . 
N 6 HOH B 9 811 24 HOH HOH . 
N 6 HOH B 10 812 25 HOH HOH . 
N 6 HOH B 11 813 26 HOH HOH . 
N 6 HOH B 12 814 29 HOH HOH . 
N 6 HOH B 13 815 30 HOH HOH . 
N 6 HOH B 14 816 31 HOH HOH . 
N 6 HOH B 15 817 32 HOH HOH . 
N 6 HOH B 16 818 33 HOH HOH . 
N 6 HOH B 17 819 35 HOH HOH . 
N 6 HOH B 18 820 36 HOH HOH . 
N 6 HOH B 19 821 38 HOH HOH . 
N 6 HOH B 20 822 39 HOH HOH . 
N 6 HOH B 21 823 41 HOH HOH . 
N 6 HOH B 22 824 44 HOH HOH . 
N 6 HOH B 23 825 45 HOH HOH . 
N 6 HOH B 24 826 48 HOH HOH . 
N 6 HOH B 25 827 49 HOH HOH . 
N 6 HOH B 26 828 53 HOH HOH . 
N 6 HOH B 27 829 54 HOH HOH . 
N 6 HOH B 28 830 55 HOH HOH . 
N 6 HOH B 29 831 56 HOH HOH . 
N 6 HOH B 30 832 58 HOH HOH . 
N 6 HOH B 31 833 59 HOH HOH . 
N 6 HOH B 32 834 64 HOH HOH . 
N 6 HOH B 33 835 67 HOH HOH . 
N 6 HOH B 34 836 68 HOH HOH . 
N 6 HOH B 35 837 69 HOH HOH . 
N 6 HOH B 36 838 70 HOH HOH . 
N 6 HOH B 37 839 71 HOH HOH . 
N 6 HOH B 38 840 72 HOH HOH . 
N 6 HOH B 39 841 73 HOH HOH . 
N 6 HOH B 40 842 75 HOH HOH . 
N 6 HOH B 41 843 76 HOH HOH . 
N 6 HOH B 42 844 78 HOH HOH . 
N 6 HOH B 43 845 83 HOH HOH . 
N 6 HOH B 44 846 84 HOH HOH . 
N 6 HOH B 45 847 85 HOH HOH . 
N 6 HOH B 46 848 87 HOH HOH . 
N 6 HOH B 47 849 88 HOH HOH . 
N 6 HOH B 48 850 90 HOH HOH . 
N 6 HOH B 49 851 91 HOH HOH . 
N 6 HOH B 50 852 92 HOH HOH . 
N 6 HOH B 51 853 94 HOH HOH . 
N 6 HOH B 52 854 95 HOH HOH . 
N 6 HOH B 53 855 96 HOH HOH . 
N 6 HOH B 54 856 97 HOH HOH . 
N 6 HOH B 55 857 98 HOH HOH . 
N 6 HOH B 56 858 99 HOH HOH . 
N 6 HOH B 57 859 100 HOH HOH . 
N 6 HOH B 58 860 101 HOH HOH . 
N 6 HOH B 59 861 107 HOH HOH . 
N 6 HOH B 60 862 108 HOH HOH . 
N 6 HOH B 61 863 110 HOH HOH . 
N 6 HOH B 62 864 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . E 4 -30.904 5.233 103.153 0.7 92.67 ? PG ATP 501 A 1 
HETATM 2 O O1G ATP . . . E 4 -31.829 4.034 103.114 0.7 95.3 ? O1G ATP 501 A 1 
HETATM 3 O O2G ATP . . . E 4 -29.957 5.296 101.968 0.7 92.16 ? O2G ATP 501 A 1 
HETATM 4 O O3G ATP . . . E 4 -31.679 6.499 103.431 0.7 91.04 ? O3G ATP 501 A 1 
HETATM 5 P PB ATP . . . E 4 -28.329 4.855 104.538 0.7 93.87 ? PB ATP 501 A 1 
HETATM 6 O O1B ATP . . . E 4 -27.674 5.616 103.414 0.7 94.09 ? O1B ATP 501 A 1 
HETATM 7 O O2B ATP . . . E 4 -27.964 3.39 104.692 0.7 84.24 ? O2B ATP 501 A 1 
HETATM 8 O O3B ATP . . . E 4 -29.958 5.023 104.469 0.7 91.97 ? O3B ATP 501 A 1 
HETATM 9 P PA ATP . . . E 4 -26.707 6.68 106.039 0.7 91.75 ? PA ATP 501 A 1 
HETATM 10 O O1A ATP . . . E 4 -26.603 7.146 107.476 0.7 89.65 ? O1A ATP 501 A 1 
HETATM 11 O O2A ATP . . . E 4 -26.742 7.684 104.908 0.7 90.94 ? O2A ATP 501 A 1 
HETATM 12 O O3A ATP . . . E 4 -27.959 5.651 105.908 0.7 90.22 ? O3A ATP 501 A 1 
HETATM 13 O O5' ATP . . . E 4 -25.448 5.722 105.787 0.7 89.45 ? O5' ATP 501 A 1 
HETATM 14 C C5' ATP . . . E 4 -24.63 5.859 104.638 0.7 81.43 ? C5' ATP 501 A 1 
HETATM 15 C C4' ATP . . . E 4 -23.242 6.173 105.162 0.7 75.33 ? C4' ATP 501 A 1 
HETATM 16 O O4' ATP . . . E 4 -22.822 5.191 106.111 0.7 71 ? O4' ATP 501 A 1 
HETATM 17 C C3' ATP . . . E 4 -22.216 6.169 104.04 0.7 72.91 ? C3' ATP 501 A 1 
HETATM 18 O O3' ATP . . . E 4 -21.786 7.525 103.87 0.7 69.48 ? O3' ATP 501 A 1 
HETATM 19 C C2' ATP . . . E 4 -21.107 5.268 104.545 0.7 67.37 ? C2' ATP 501 A 1 
HETATM 20 O O2' ATP . . . E 4 -19.802 5.824 104.359 0.7 58.43 ? O2' ATP 501 A 1 
HETATM 21 C C1' ATP . . . E 4 -21.411 5.19 106.03 0.7 63.49 ? C1' ATP 501 A 1 
HETATM 22 N N9 ATP . . . E 4 -20.702 4.032 106.624 0.7 64.45 ? N9 ATP 501 A 1 
HETATM 23 C C8 ATP . . . E 4 -20.068 3.068 105.915 0.7 62.77 ? C8 ATP 501 A 1 
HETATM 24 N N7 ATP . . . E 4 -19.45 2.187 106.733 0.7 61.91 ? N7 ATP 501 A 1 
HETATM 25 C C5 ATP . . . E 4 -19.688 2.594 107.996 0.7 61.17 ? C5 ATP 501 A 1 
HETATM 26 C C6 ATP . . . E 4 -19.333 2.098 109.336 0.7 59.25 ? C6 ATP 501 A 1 
HETATM 27 N N6 ATP . . . E 4 -18.59 0.98 109.458 0.7 57.13 ? N6 ATP 501 A 1 
HETATM 28 N N1 ATP . . . E 4 -19.758 2.811 110.407 0.7 62.51 ? N1 ATP 501 A 1 
HETATM 29 C C2 ATP . . . E 4 -20.504 3.93 110.266 0.7 62.35 ? C2 ATP 501 A 1 
HETATM 30 N N3 ATP . . . E 4 -20.873 4.437 109.072 0.7 58.67 ? N3 ATP 501 A 1 
HETATM 31 C C4 ATP . . . E 4 -20.501 3.819 107.926 0.7 61.49 ? C4 ATP 501 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#