data_2QK4
#
_model_server_result.job_id            iEMmGaVQTYm2ZXPFJmadiQ 
_model_server_result.datetime_utc      '2025-03-01 19:40:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qk4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":801}' 
#
_entry.id    2QK4 
#
_exptl.entry_id    2QK4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.07 
_cell.angle_gamma         90 
_cell.entry_id            2QK4 
_cell.length_a            70.28 
_cell.length_b            79.81 
_cell.length_c            113.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QK4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 K N N 
? 5 L N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 178 n n 
C1 C2 GOL sing 179 n n 
C1 H11 GOL sing 180 n n 
C1 H12 GOL sing 181 n n 
O1 HO1 GOL sing 182 n n 
C2 O2 GOL sing 183 n n 
C2 C3 GOL sing 184 n n 
C2 H2 GOL sing 185 n n 
O2 HO2 GOL sing 186 n n 
C3 O3 GOL sing 187 n n 
C3 H31 GOL sing 188 n n 
C3 H32 GOL sing 189 n n 
O3 HO3 GOL sing 190 n n 
#
_atom_sites.entry_id                     2QK4 
_atom_sites.fract_transf_matrix[1][1]    0.014229 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003566 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01253 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 602 2 CL CL . 
D 3 SO4 A 1 701 1 SO4 SO4 . 
E 4 ATP A 1 501 2 ATP ATP . 
F 5 GOL A 1 803 3 GOL GOL . 
G 5 GOL A 1 804 4 GOL GOL . 
H 2 CL B 1 601 1 CL CL . 
I 3 SO4 B 1 702 2 SO4 SO4 . 
J 4 ATP B 1 501 1 ATP ATP . 
K 5 GOL B 1 801 1 GOL GOL . 
L 5 GOL B 1 802 2 GOL GOL . 
M 6 HOH A 1 805 1 HOH HOH . 
M 6 HOH A 2 806 2 HOH HOH . 
M 6 HOH A 3 807 4 HOH HOH . 
M 6 HOH A 4 808 6 HOH HOH . 
M 6 HOH A 5 809 7 HOH HOH . 
M 6 HOH A 6 810 11 HOH HOH . 
M 6 HOH A 7 811 13 HOH HOH . 
M 6 HOH A 8 812 15 HOH HOH . 
M 6 HOH A 9 813 16 HOH HOH . 
M 6 HOH A 10 814 18 HOH HOH . 
M 6 HOH A 11 815 19 HOH HOH . 
M 6 HOH A 12 816 20 HOH HOH . 
M 6 HOH A 13 817 21 HOH HOH . 
M 6 HOH A 14 818 22 HOH HOH . 
M 6 HOH A 15 819 23 HOH HOH . 
M 6 HOH A 16 820 27 HOH HOH . 
M 6 HOH A 17 821 28 HOH HOH . 
M 6 HOH A 18 822 34 HOH HOH . 
M 6 HOH A 19 823 37 HOH HOH . 
M 6 HOH A 20 824 40 HOH HOH . 
M 6 HOH A 21 825 42 HOH HOH . 
M 6 HOH A 22 826 43 HOH HOH . 
M 6 HOH A 23 827 46 HOH HOH . 
M 6 HOH A 24 828 47 HOH HOH . 
M 6 HOH A 25 829 50 HOH HOH . 
M 6 HOH A 26 830 51 HOH HOH . 
M 6 HOH A 27 831 52 HOH HOH . 
M 6 HOH A 28 832 57 HOH HOH . 
M 6 HOH A 29 833 60 HOH HOH . 
M 6 HOH A 30 834 61 HOH HOH . 
M 6 HOH A 31 835 62 HOH HOH . 
M 6 HOH A 32 836 63 HOH HOH . 
M 6 HOH A 33 837 65 HOH HOH . 
M 6 HOH A 34 838 66 HOH HOH . 
M 6 HOH A 35 839 74 HOH HOH . 
M 6 HOH A 36 840 77 HOH HOH . 
M 6 HOH A 37 841 79 HOH HOH . 
M 6 HOH A 38 842 80 HOH HOH . 
M 6 HOH A 39 843 81 HOH HOH . 
M 6 HOH A 40 844 82 HOH HOH . 
M 6 HOH A 41 845 86 HOH HOH . 
M 6 HOH A 42 846 89 HOH HOH . 
M 6 HOH A 43 847 93 HOH HOH . 
M 6 HOH A 44 848 102 HOH HOH . 
M 6 HOH A 45 849 103 HOH HOH . 
M 6 HOH A 46 850 104 HOH HOH . 
M 6 HOH A 47 851 105 HOH HOH . 
M 6 HOH A 48 852 106 HOH HOH . 
M 6 HOH A 49 853 109 HOH HOH . 
N 6 HOH B 1 803 3 HOH HOH . 
N 6 HOH B 2 804 5 HOH HOH . 
N 6 HOH B 3 805 8 HOH HOH . 
N 6 HOH B 4 806 9 HOH HOH . 
N 6 HOH B 5 807 10 HOH HOH . 
N 6 HOH B 6 808 12 HOH HOH . 
N 6 HOH B 7 809 14 HOH HOH . 
N 6 HOH B 8 810 17 HOH HOH . 
N 6 HOH B 9 811 24 HOH HOH . 
N 6 HOH B 10 812 25 HOH HOH . 
N 6 HOH B 11 813 26 HOH HOH . 
N 6 HOH B 12 814 29 HOH HOH . 
N 6 HOH B 13 815 30 HOH HOH . 
N 6 HOH B 14 816 31 HOH HOH . 
N 6 HOH B 15 817 32 HOH HOH . 
N 6 HOH B 16 818 33 HOH HOH . 
N 6 HOH B 17 819 35 HOH HOH . 
N 6 HOH B 18 820 36 HOH HOH . 
N 6 HOH B 19 821 38 HOH HOH . 
N 6 HOH B 20 822 39 HOH HOH . 
N 6 HOH B 21 823 41 HOH HOH . 
N 6 HOH B 22 824 44 HOH HOH . 
N 6 HOH B 23 825 45 HOH HOH . 
N 6 HOH B 24 826 48 HOH HOH . 
N 6 HOH B 25 827 49 HOH HOH . 
N 6 HOH B 26 828 53 HOH HOH . 
N 6 HOH B 27 829 54 HOH HOH . 
N 6 HOH B 28 830 55 HOH HOH . 
N 6 HOH B 29 831 56 HOH HOH . 
N 6 HOH B 30 832 58 HOH HOH . 
N 6 HOH B 31 833 59 HOH HOH . 
N 6 HOH B 32 834 64 HOH HOH . 
N 6 HOH B 33 835 67 HOH HOH . 
N 6 HOH B 34 836 68 HOH HOH . 
N 6 HOH B 35 837 69 HOH HOH . 
N 6 HOH B 36 838 70 HOH HOH . 
N 6 HOH B 37 839 71 HOH HOH . 
N 6 HOH B 38 840 72 HOH HOH . 
N 6 HOH B 39 841 73 HOH HOH . 
N 6 HOH B 40 842 75 HOH HOH . 
N 6 HOH B 41 843 76 HOH HOH . 
N 6 HOH B 42 844 78 HOH HOH . 
N 6 HOH B 43 845 83 HOH HOH . 
N 6 HOH B 44 846 84 HOH HOH . 
N 6 HOH B 45 847 85 HOH HOH . 
N 6 HOH B 46 848 87 HOH HOH . 
N 6 HOH B 47 849 88 HOH HOH . 
N 6 HOH B 48 850 90 HOH HOH . 
N 6 HOH B 49 851 91 HOH HOH . 
N 6 HOH B 50 852 92 HOH HOH . 
N 6 HOH B 51 853 94 HOH HOH . 
N 6 HOH B 52 854 95 HOH HOH . 
N 6 HOH B 53 855 96 HOH HOH . 
N 6 HOH B 54 856 97 HOH HOH . 
N 6 HOH B 55 857 98 HOH HOH . 
N 6 HOH B 56 858 99 HOH HOH . 
N 6 HOH B 57 859 100 HOH HOH . 
N 6 HOH B 58 860 101 HOH HOH . 
N 6 HOH B 59 861 107 HOH HOH . 
N 6 HOH B 60 862 108 HOH HOH . 
N 6 HOH B 61 863 110 HOH HOH . 
N 6 HOH B 62 864 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 5 -23.56 8.852 63.994 1 87.52 ? C1 GOL 801 B 1 
HETATM 2 O O1 GOL . . . K 5 -24.816 9.483 64.109 1 78.64 ? O1 GOL 801 B 1 
HETATM 3 C C2 GOL . . . K 5 -22.731 9.123 65.245 1 90.01 ? C2 GOL 801 B 1 
HETATM 4 O O2 GOL . . . K 5 -22.167 10.413 65.145 1 93.84 ? O2 GOL 801 B 1 
HETATM 5 C C3 GOL . . . K 5 -21.633 8.066 65.356 1 90.65 ? C3 GOL 801 B 1 
HETATM 6 O O3 GOL . . . K 5 -22.173 6.804 65.021 1 89.03 ? O3 GOL 801 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#