data_2QK8 # _model_server_result.job_id are3yVZ662nX9M1g9KDgtg _model_server_result.datetime_utc '2024-11-15 01:52:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 2QK8 # _exptl.entry_id 2QK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.2 _cell.angle_gamma 90 _cell.entry_id 2QK8 _cell.length_a 82.697 _cell.length_b 41.236 _cell.length_c 67.032 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 237 n y N1 C8A MTX sing 238 n y C2 NA2 MTX sing 239 n n C2 N3 MTX sing 240 n y NA2 HN21 MTX sing 241 n n NA2 HN22 MTX sing 242 n n N3 C4 MTX doub 243 n y C4 NA4 MTX sing 244 n n C4 C4A MTX sing 245 n y NA4 HN41 MTX sing 246 n n NA4 HN42 MTX sing 247 n n C4A N5 MTX sing 248 n y C4A C8A MTX doub 249 n y N5 C6 MTX doub 250 n y C6 C7 MTX sing 251 n y C6 C9 MTX sing 252 n n C7 N8 MTX doub 253 n y C7 H7 MTX sing 254 n n N8 C8A MTX sing 255 n y C9 N10 MTX sing 256 n n C9 H91 MTX sing 257 n n C9 H92 MTX sing 258 n n N10 CM MTX sing 259 n n N10 C14 MTX sing 260 n n CM HM1 MTX sing 261 n n CM HM2 MTX sing 262 n n CM HM3 MTX sing 263 n n C11 C12 MTX doub 264 n y C11 C16 MTX sing 265 n y C11 C MTX sing 266 n n C12 C13 MTX sing 267 n y C12 H12 MTX sing 268 n n C13 C14 MTX doub 269 n y C13 H13 MTX sing 270 n n C14 C15 MTX sing 271 n y C15 C16 MTX doub 272 n y C15 H15 MTX sing 273 n n C16 H16 MTX sing 274 n n C O MTX doub 275 n n C N MTX sing 276 n n N CA MTX sing 277 n n N HN MTX sing 278 n n CA CT MTX sing 279 n n CA CB MTX sing 280 n n CA HA MTX sing 281 n n CT O1 MTX doub 282 n n CT O2 MTX sing 283 n n O2 HO2 MTX sing 284 n n CB CG MTX sing 285 n n CB HB1 MTX sing 286 n n CB HB2 MTX sing 287 n n CG CD MTX sing 288 n n CG HG1 MTX sing 289 n n CG HG2 MTX sing 290 n n CD OE1 MTX doub 291 n n CD OE2 MTX sing 292 n n OE2 HOE2 MTX sing 293 n n # _atom_sites.entry_id 2QK8 _atom_sites.fract_transf_matrix[1][1] 0.012092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006759 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 200 200 MTX MTX . C 3 HOH A 1 201 1 HOH HOH . C 3 HOH A 2 202 2 HOH HOH . C 3 HOH A 3 203 3 HOH HOH . C 3 HOH A 4 204 4 HOH HOH . C 3 HOH A 5 205 5 HOH HOH . C 3 HOH A 6 206 6 HOH HOH . C 3 HOH A 7 207 7 HOH HOH . C 3 HOH A 8 208 8 HOH HOH . C 3 HOH A 9 209 9 HOH HOH . C 3 HOH A 10 210 10 HOH HOH . C 3 HOH A 11 211 11 HOH HOH . C 3 HOH A 12 212 12 HOH HOH . C 3 HOH A 13 213 13 HOH HOH . C 3 HOH A 14 214 14 HOH HOH . C 3 HOH A 15 215 15 HOH HOH . C 3 HOH A 16 216 16 HOH HOH . C 3 HOH A 17 217 17 HOH HOH . C 3 HOH A 18 218 18 HOH HOH . C 3 HOH A 19 219 19 HOH HOH . C 3 HOH A 20 220 20 HOH HOH . C 3 HOH A 21 221 21 HOH HOH . C 3 HOH A 22 222 22 HOH HOH . C 3 HOH A 23 223 23 HOH HOH . C 3 HOH A 24 224 24 HOH HOH . C 3 HOH A 25 225 25 HOH HOH . C 3 HOH A 26 226 26 HOH HOH . C 3 HOH A 27 227 27 HOH HOH . C 3 HOH A 28 228 28 HOH HOH . C 3 HOH A 29 229 29 HOH HOH . C 3 HOH A 30 230 30 HOH HOH . C 3 HOH A 31 231 31 HOH HOH . C 3 HOH A 32 232 32 HOH HOH . C 3 HOH A 33 233 33 HOH HOH . C 3 HOH A 34 234 34 HOH HOH . C 3 HOH A 35 235 35 HOH HOH . C 3 HOH A 36 236 36 HOH HOH . C 3 HOH A 37 237 37 HOH HOH . C 3 HOH A 38 238 38 HOH HOH . C 3 HOH A 39 239 39 HOH HOH . C 3 HOH A 40 240 40 HOH HOH . C 3 HOH A 41 241 41 HOH HOH . C 3 HOH A 42 242 42 HOH HOH . C 3 HOH A 43 243 43 HOH HOH . C 3 HOH A 44 244 44 HOH HOH . C 3 HOH A 45 245 45 HOH HOH . C 3 HOH A 46 246 46 HOH HOH . C 3 HOH A 47 247 47 HOH HOH . C 3 HOH A 48 248 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . B 2 -3.495 -6.066 17.312 1 18.08 ? N1 MTX 200 A 1 HETATM 2 C C2 MTX . . . B 2 -3.962 -7.324 17.238 1 18.68 ? C2 MTX 200 A 1 HETATM 3 N NA2 MTX . . . B 2 -3.358 -8.245 17.938 1 20.83 ? NA2 MTX 200 A 1 HETATM 4 N N3 MTX . . . B 2 -5.049 -7.665 16.473 1 19.99 ? N3 MTX 200 A 1 HETATM 5 C C4 MTX . . . B 2 -5.686 -6.735 15.694 1 19.93 ? C4 MTX 200 A 1 HETATM 6 N NA4 MTX . . . B 2 -6.849 -7.101 15.101 1 17.74 ? NA4 MTX 200 A 1 HETATM 7 C C4A MTX . . . B 2 -5.222 -5.415 15.758 1 17.99 ? C4A MTX 200 A 1 HETATM 8 N N5 MTX . . . B 2 -5.828 -4.398 15.045 1 19.15 ? N5 MTX 200 A 1 HETATM 9 C C6 MTX . . . B 2 -5.359 -3.08 15.125 1 19.53 ? C6 MTX 200 A 1 HETATM 10 C C7 MTX . . . B 2 -4.27 -2.784 15.943 1 20.57 ? C7 MTX 200 A 1 HETATM 11 N N8 MTX . . . B 2 -3.656 -3.794 16.675 1 21.56 ? N8 MTX 200 A 1 HETATM 12 C C8A MTX . . . B 2 -4.127 -5.102 16.575 1 19.62 ? C8A MTX 200 A 1 HETATM 13 C C9 MTX . . . B 2 -6.004 -1.97 14.358 1 20.25 ? C9 MTX 200 A 1 HETATM 14 N N10 MTX . . . B 2 -5.134 -0.78 14.283 1 27.36 ? N10 MTX 200 A 1 HETATM 15 C CM MTX . . . B 2 -5.796 0.514 14.461 1 22.38 ? CM MTX 200 A 1 HETATM 16 C C11 MTX . . . B 2 -1.52 -0.786 12.037 1 29.46 ? C11 MTX 200 A 1 HETATM 17 C C12 MTX . . . B 2 -2.121 0.433 12.389 1 29.23 ? C12 MTX 200 A 1 HETATM 18 C C13 MTX . . . B 2 -3.291 0.43 13.138 1 29.22 ? C13 MTX 200 A 1 HETATM 19 C C14 MTX . . . B 2 -3.898 -0.788 13.524 1 28.8 ? C14 MTX 200 A 1 HETATM 20 C C15 MTX . . . B 2 -3.275 -1.991 13.15 1 28.43 ? C15 MTX 200 A 1 HETATM 21 C C16 MTX . . . B 2 -2.101 -1.944 12.379 1 29.26 ? C16 MTX 200 A 1 HETATM 22 C C MTX . . . B 2 -0.226 -0.831 11.256 1 29.56 ? C MTX 200 A 1 HETATM 23 O O MTX . . . B 2 0.267 0.334 10.624 1 28.64 ? O MTX 200 A 1 HETATM 24 N N MTX . . . B 2 0.41 -2.005 11.238 1 31.29 ? N MTX 200 A 1 HETATM 25 C CA MTX . . . B 2 1.637 -2.306 10.534 1 33.37 ? CA MTX 200 A 1 HETATM 26 C CT MTX . . . B 2 1.411 -3.531 9.654 1 34.01 ? CT MTX 200 A 1 HETATM 27 O O1 MTX . . . B 2 0.745 -4.522 10.097 1 33.38 ? O1 MTX 200 A 1 HETATM 28 O O2 MTX . . . B 2 1.864 -3.582 8.463 1 33.83 ? O2 MTX 200 A 1 HETATM 29 C CB MTX . . . B 2 2.688 -2.617 11.612 1 34.49 ? CB MTX 200 A 1 HETATM 30 C CG MTX . . . B 2 3.99 -1.787 11.665 1 38.2 ? CG MTX 200 A 1 HETATM 31 C CD MTX . . . B 2 3.72 -0.313 11.453 1 44.3 ? CD MTX 200 A 1 HETATM 32 O OE1 MTX . . . B 2 4.066 0.255 10.376 1 48.2 ? OE1 MTX 200 A 1 HETATM 33 O OE2 MTX . . . B 2 3.143 0.367 12.337 1 44.74 ? OE2 MTX 200 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #