data_2QKH # _model_server_result.job_id yTtvn6gSHFUFoFpwXtRlFA _model_server_result.datetime_utc '2025-03-09 04:37:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qkh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":151}' # _entry.id 2QKH # _exptl.entry_id 2QKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D(-)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QKH _cell.length_a 84.007 _cell.length_b 84.007 _cell.length_c 180.947 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 1 7 ZB1 ZB0 C1 O1 . O4 HO4 . sing 2 ? 3 2 1 GLC ZB1 C1 O1 . O4 HO4 . sing 3 ? 3 3 2 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 3 4 3 ZB2 GLC C1 O1 . O4 HO4 . sing 5 ? 3 5 4 ZB3 ZB2 C1 O1 . O4 HO4 . sing 6 ? 3 6 5 ZB2 ZB3 C1 O1 . O4 HO4 . sing 7 ? 3 7 6 ZB0 ZB2 C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C ZB1 1 C 1 ZB1 B 150 QKH 3 n C GLC 2 C 2 GLC B 150 QKH 3 n C GLC 3 C 3 GLC B 150 QKH 3 n C ZB2 4 C 4 ZB2 B 150 QKH 3 n C ZB3 5 C 5 ZB3 B 150 QKH 3 n C ZB2 6 C 6 ZB2 B 150 QKH 3 n C ZB0 7 C 7 ZB0 B 150 QKH # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 43 A CYS 46 1_555 B SG CYS 67 A CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf2 B SG CYS 58 A CYS 61 1_555 B SG CYS 100 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 81 A CYS 84 1_555 B SG CYS 115 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 C O4 ZB1 . C ZB1 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 sing covale ? covale2 C C1 ZB1 . C ZB1 1 1_555 C O4 ZB0 . C ZB0 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 sing covale ? covale3 C O4 GLC . C GLC 2 1_555 C C1 GLC . C GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 sing covale ? covale4 C O4 GLC . C GLC 3 1_555 C C1 ZB2 . C ZB2 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing covale ? covale5 C O4 ZB2 . C ZB2 4 1_555 C C1 ZB3 . C ZB3 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 sing covale ? covale6 C O4 ZB3 . C ZB3 5 1_555 C C1 ZB2 . C ZB2 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 sing covale ? covale7 C O4 ZB2 . C ZB2 6 1_555 C C1 ZB0 . C ZB0 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TAR _chem_comp.mon_nstd_flag . _chem_comp.name 'D(-)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TAR doub 314 n n O11 C1 TAR sing 315 n n O11 HO1 TAR sing 316 n n C1 C2 TAR sing 317 n n C2 O2 TAR sing 318 n n C2 C3 TAR sing 319 n n C2 H2 TAR sing 320 n n O2 HO2 TAR sing 321 n n C3 O3 TAR sing 322 n n C3 C4 TAR sing 323 n n C3 H3 TAR sing 324 n n O3 HO3 TAR sing 325 n n C4 O4 TAR doub 326 n n C4 O41 TAR sing 327 n n O41 HO4 TAR sing 328 n n # _atom_sites.entry_id 2QKH _atom_sites.fract_transf_matrix[1][1] 0.011904 _atom_sites.fract_transf_matrix[1][2] 0.006873 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TAR A 1 151 151 TAR TAR . E 5 HOH B 1 201 201 HOH HOH . E 5 HOH B 2 205 205 HOH HOH . E 5 HOH B 3 208 208 HOH HOH . E 5 HOH B 4 209 209 HOH HOH . E 5 HOH B 5 210 210 HOH HOH . E 5 HOH B 6 211 211 HOH HOH . E 5 HOH B 7 214 214 HOH HOH . E 5 HOH B 8 216 216 HOH HOH . E 5 HOH B 9 217 217 HOH HOH . E 5 HOH B 10 221 221 HOH HOH . E 5 HOH B 11 228 228 HOH HOH . E 5 HOH B 12 239 239 HOH HOH . E 5 HOH B 13 241 241 HOH HOH . E 5 HOH B 14 244 244 HOH HOH . E 5 HOH B 15 246 246 HOH HOH . E 5 HOH B 16 248 248 HOH HOH . E 5 HOH B 17 251 251 HOH HOH . E 5 HOH B 18 263 263 HOH HOH . E 5 HOH B 19 264 264 HOH HOH . E 5 HOH B 20 265 265 HOH HOH . E 5 HOH B 21 269 269 HOH HOH . E 5 HOH B 22 273 273 HOH HOH . E 5 HOH B 23 276 276 HOH HOH . E 5 HOH B 24 277 277 HOH HOH . E 5 HOH B 25 282 282 HOH HOH . E 5 HOH B 26 283 283 HOH HOH . E 5 HOH B 27 285 285 HOH HOH . E 5 HOH B 28 286 286 HOH HOH . E 5 HOH B 29 288 288 HOH HOH . E 5 HOH B 30 290 290 HOH HOH . E 5 HOH B 31 291 291 HOH HOH . E 5 HOH B 32 301 301 HOH HOH . E 5 HOH B 33 304 304 HOH HOH . E 5 HOH B 34 309 309 HOH HOH . E 5 HOH B 35 315 315 HOH HOH . E 5 HOH B 36 320 320 HOH HOH . E 5 HOH B 37 321 321 HOH HOH . E 5 HOH B 38 327 327 HOH HOH . F 5 HOH A 1 200 200 HOH HOH . F 5 HOH A 2 202 202 HOH HOH . F 5 HOH A 3 203 203 HOH HOH . F 5 HOH A 4 204 204 HOH HOH . F 5 HOH A 5 206 206 HOH HOH . F 5 HOH A 6 207 207 HOH HOH . F 5 HOH A 7 212 212 HOH HOH . F 5 HOH A 8 215 215 HOH HOH . F 5 HOH A 9 218 218 HOH HOH . F 5 HOH A 10 219 219 HOH HOH . F 5 HOH A 11 220 220 HOH HOH . F 5 HOH A 12 222 222 HOH HOH . F 5 HOH A 13 223 223 HOH HOH . F 5 HOH A 14 224 224 HOH HOH . F 5 HOH A 15 225 225 HOH HOH . F 5 HOH A 16 226 226 HOH HOH . F 5 HOH A 17 227 227 HOH HOH . F 5 HOH A 18 229 229 HOH HOH . F 5 HOH A 19 230 230 HOH HOH . F 5 HOH A 20 231 231 HOH HOH . F 5 HOH A 21 232 232 HOH HOH . F 5 HOH A 22 233 233 HOH HOH . F 5 HOH A 23 234 234 HOH HOH . F 5 HOH A 24 235 235 HOH HOH . F 5 HOH A 25 236 236 HOH HOH . F 5 HOH A 26 237 237 HOH HOH . F 5 HOH A 27 238 238 HOH HOH . F 5 HOH A 28 240 240 HOH HOH . F 5 HOH A 29 242 242 HOH HOH . F 5 HOH A 30 243 243 HOH HOH . F 5 HOH A 31 245 245 HOH HOH . F 5 HOH A 32 247 247 HOH HOH . F 5 HOH A 33 249 249 HOH HOH . F 5 HOH A 34 250 250 HOH HOH . F 5 HOH A 35 252 252 HOH HOH . F 5 HOH A 36 253 253 HOH HOH . F 5 HOH A 37 254 254 HOH HOH . F 5 HOH A 38 255 255 HOH HOH . F 5 HOH A 39 256 256 HOH HOH . F 5 HOH A 40 257 257 HOH HOH . F 5 HOH A 41 258 258 HOH HOH . F 5 HOH A 42 259 259 HOH HOH . F 5 HOH A 43 260 260 HOH HOH . F 5 HOH A 44 261 261 HOH HOH . F 5 HOH A 45 262 262 HOH HOH . F 5 HOH A 46 266 266 HOH HOH . F 5 HOH A 47 267 267 HOH HOH . F 5 HOH A 48 268 268 HOH HOH . F 5 HOH A 49 270 270 HOH HOH . F 5 HOH A 50 271 271 HOH HOH . F 5 HOH A 51 272 272 HOH HOH . F 5 HOH A 52 274 274 HOH HOH . F 5 HOH A 53 275 275 HOH HOH . F 5 HOH A 54 278 278 HOH HOH . F 5 HOH A 55 279 279 HOH HOH . F 5 HOH A 56 280 280 HOH HOH . F 5 HOH A 57 281 281 HOH HOH . F 5 HOH A 58 284 284 HOH HOH . F 5 HOH A 59 287 287 HOH HOH . F 5 HOH A 60 289 289 HOH HOH . F 5 HOH A 61 292 292 HOH HOH . F 5 HOH A 62 293 293 HOH HOH . F 5 HOH A 63 294 294 HOH HOH . F 5 HOH A 64 295 295 HOH HOH . F 5 HOH A 65 296 296 HOH HOH . F 5 HOH A 66 297 297 HOH HOH . F 5 HOH A 67 298 298 HOH HOH . F 5 HOH A 68 299 299 HOH HOH . F 5 HOH A 69 300 300 HOH HOH . F 5 HOH A 70 302 302 HOH HOH . F 5 HOH A 71 303 303 HOH HOH . F 5 HOH A 72 305 305 HOH HOH . F 5 HOH A 73 306 306 HOH HOH . F 5 HOH A 74 307 307 HOH HOH . F 5 HOH A 75 308 308 HOH HOH . F 5 HOH A 76 310 310 HOH HOH . F 5 HOH A 77 311 311 HOH HOH . F 5 HOH A 78 312 312 HOH HOH . F 5 HOH A 79 313 313 HOH HOH . F 5 HOH A 80 314 314 HOH HOH . F 5 HOH A 81 316 316 HOH HOH . F 5 HOH A 82 317 317 HOH HOH . F 5 HOH A 83 318 318 HOH HOH . F 5 HOH A 84 319 319 HOH HOH . F 5 HOH A 85 322 322 HOH HOH . F 5 HOH A 86 323 323 HOH HOH . F 5 HOH A 87 324 324 HOH HOH . F 5 HOH A 88 325 325 HOH HOH . F 5 HOH A 89 326 326 HOH HOH . F 5 HOH A 90 328 328 HOH HOH . F 5 HOH A 91 329 329 HOH HOH . F 5 HOH A 92 330 330 HOH HOH . F 5 HOH A 93 331 331 HOH HOH . F 5 HOH A 94 332 332 HOH HOH . F 5 HOH A 95 333 333 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TAR . . . D 4 24.325 11.741 29.807 1 18.05 ? O1 TAR 151 A 1 HETATM 2 O O11 TAR . . . D 4 24.87 9.7 30.35 1 16.09 ? O11 TAR 151 A 1 HETATM 3 C C1 TAR . . . D 4 24.08 10.525 29.877 1 16.36 ? C1 TAR 151 A 1 HETATM 4 C C2 TAR . . . D 4 22.714 10.058 29.401 1 16.52 ? C2 TAR 151 A 1 HETATM 5 O O2 TAR . . . D 4 21.98 11.137 28.82 1 16.34 ? O2 TAR 151 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #