data_2QKM
#
_model_server_result.job_id            s7YK-6gjkoW0DYfej9h8qw 
_model_server_result.datetime_utc      '2024-10-19 00:50:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qkm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":267}' 
#
_entry.id    2QKM 
#
_exptl.entry_id    2QKM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.49 
_cell.angle_gamma         90 
_cell.entry_id            2QKM 
_cell.length_a            68.289 
_cell.length_b            161.443 
_cell.length_c            91.386 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QKM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,K,L 1 1 
E,F,J,O,P 2 1 
C,D,M,N 3 1 
G,H,Q,R 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     2QKM 
_atom_sites.fract_transf_matrix[1][1]    0.014644 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001925 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006194 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011037 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ATP B 1 267 267 ATP ATP . 
J 3 ATP F 1 267 267 ATP ATP . 
K 4 HOH A 1 128 128 HOH HOH . 
K 4 HOH A 2 129 129 HOH HOH . 
K 4 HOH A 3 130 130 HOH HOH . 
K 4 HOH A 4 131 131 HOH HOH . 
K 4 HOH A 5 132 132 HOH HOH . 
K 4 HOH A 6 133 133 HOH HOH . 
K 4 HOH A 7 134 134 HOH HOH . 
K 4 HOH A 8 135 135 HOH HOH . 
L 4 HOH B 1 268 268 HOH HOH . 
L 4 HOH B 2 269 269 HOH HOH . 
L 4 HOH B 3 270 270 HOH HOH . 
L 4 HOH B 4 271 271 HOH HOH . 
L 4 HOH B 5 272 272 HOH HOH . 
L 4 HOH B 6 273 273 HOH HOH . 
L 4 HOH B 7 274 274 HOH HOH . 
L 4 HOH B 8 275 275 HOH HOH . 
L 4 HOH B 9 276 276 HOH HOH . 
L 4 HOH B 10 277 277 HOH HOH . 
L 4 HOH B 11 278 278 HOH HOH . 
L 4 HOH B 12 279 279 HOH HOH . 
L 4 HOH B 13 280 280 HOH HOH . 
L 4 HOH B 14 281 281 HOH HOH . 
L 4 HOH B 15 282 282 HOH HOH . 
L 4 HOH B 16 283 283 HOH HOH . 
L 4 HOH B 17 284 284 HOH HOH . 
L 4 HOH B 18 285 285 HOH HOH . 
L 4 HOH B 19 286 286 HOH HOH . 
L 4 HOH B 20 287 287 HOH HOH . 
L 4 HOH B 21 288 288 HOH HOH . 
L 4 HOH B 22 289 289 HOH HOH . 
L 4 HOH B 23 290 290 HOH HOH . 
L 4 HOH B 24 291 291 HOH HOH . 
L 4 HOH B 25 292 292 HOH HOH . 
L 4 HOH B 26 293 293 HOH HOH . 
L 4 HOH B 27 294 294 HOH HOH . 
M 4 HOH C 1 128 128 HOH HOH . 
M 4 HOH C 2 129 129 HOH HOH . 
M 4 HOH C 3 130 130 HOH HOH . 
M 4 HOH C 4 131 131 HOH HOH . 
M 4 HOH C 5 132 132 HOH HOH . 
M 4 HOH C 6 133 133 HOH HOH . 
M 4 HOH C 7 134 134 HOH HOH . 
M 4 HOH C 8 136 136 HOH HOH . 
N 4 HOH D 1 267 267 HOH HOH . 
N 4 HOH D 2 268 268 HOH HOH . 
N 4 HOH D 3 269 269 HOH HOH . 
N 4 HOH D 4 270 270 HOH HOH . 
N 4 HOH D 5 271 271 HOH HOH . 
O 4 HOH E 1 128 128 HOH HOH . 
O 4 HOH E 2 129 129 HOH HOH . 
O 4 HOH E 3 130 130 HOH HOH . 
O 4 HOH E 4 131 131 HOH HOH . 
O 4 HOH E 5 132 132 HOH HOH . 
O 4 HOH E 6 133 133 HOH HOH . 
O 4 HOH E 7 134 134 HOH HOH . 
O 4 HOH E 8 135 135 HOH HOH . 
P 4 HOH F 1 268 268 HOH HOH . 
P 4 HOH F 2 269 269 HOH HOH . 
P 4 HOH F 3 270 270 HOH HOH . 
P 4 HOH F 4 271 271 HOH HOH . 
P 4 HOH F 5 272 272 HOH HOH . 
P 4 HOH F 6 273 273 HOH HOH . 
P 4 HOH F 7 274 274 HOH HOH . 
P 4 HOH F 8 275 275 HOH HOH . 
P 4 HOH F 9 276 276 HOH HOH . 
P 4 HOH F 10 277 277 HOH HOH . 
P 4 HOH F 11 278 278 HOH HOH . 
P 4 HOH F 12 279 279 HOH HOH . 
P 4 HOH F 13 280 280 HOH HOH . 
P 4 HOH F 14 281 281 HOH HOH . 
P 4 HOH F 15 282 282 HOH HOH . 
P 4 HOH F 16 283 283 HOH HOH . 
P 4 HOH F 17 284 284 HOH HOH . 
P 4 HOH F 18 285 285 HOH HOH . 
P 4 HOH F 19 286 286 HOH HOH . 
P 4 HOH F 20 287 287 HOH HOH . 
P 4 HOH F 21 288 288 HOH HOH . 
P 4 HOH F 22 289 289 HOH HOH . 
P 4 HOH F 23 290 290 HOH HOH . 
P 4 HOH F 24 291 291 HOH HOH . 
Q 4 HOH G 1 128 128 HOH HOH . 
Q 4 HOH G 2 129 129 HOH HOH . 
Q 4 HOH G 3 130 130 HOH HOH . 
Q 4 HOH G 4 131 131 HOH HOH . 
Q 4 HOH G 5 132 132 HOH HOH . 
Q 4 HOH G 6 133 133 HOH HOH . 
Q 4 HOH G 7 134 134 HOH HOH . 
Q 4 HOH G 8 135 135 HOH HOH . 
Q 4 HOH G 9 136 136 HOH HOH . 
Q 4 HOH G 10 137 137 HOH HOH . 
Q 4 HOH G 11 138 138 HOH HOH . 
Q 4 HOH G 12 139 139 HOH HOH . 
Q 4 HOH G 13 140 140 HOH HOH . 
Q 4 HOH G 14 141 141 HOH HOH . 
Q 4 HOH G 15 142 142 HOH HOH . 
Q 4 HOH G 16 143 143 HOH HOH . 
R 4 HOH H 1 267 267 HOH HOH . 
R 4 HOH H 2 268 268 HOH HOH . 
R 4 HOH H 3 269 269 HOH HOH . 
R 4 HOH H 4 270 270 HOH HOH . 
R 4 HOH H 5 271 271 HOH HOH . 
R 4 HOH H 6 272 272 HOH HOH . 
R 4 HOH H 7 273 273 HOH HOH . 
R 4 HOH H 8 274 274 HOH HOH . 
R 4 HOH H 9 275 275 HOH HOH . 
R 4 HOH H 10 276 276 HOH HOH . 
R 4 HOH H 11 277 277 HOH HOH . 
R 4 HOH H 12 278 278 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . J 3 -1.493 13.809 40.597 1 123.02 ? PG ATP 267 F 1 
HETATM 2 O O1G ATP . . . J 3 -0.122 13.689 39.933 1 122.87 ? O1G ATP 267 F 1 
HETATM 3 O O2G ATP . . . J 3 -1.944 12.555 41.337 1 122.6 ? O2G ATP 267 F 1 
HETATM 4 O O3G ATP . . . J 3 -1.691 15.093 41.396 1 123.17 ? O3G ATP 267 F 1 
HETATM 5 P PB ATP . . . J 3 -2.067 14.437 37.895 1 119.28 ? PB ATP 267 F 1 
HETATM 6 O O1B ATP . . . J 3 -1.153 15.637 38.067 1 119.71 ? O1B ATP 267 F 1 
HETATM 7 O O2B ATP . . . J 3 -1.606 13.247 37.077 1 118.94 ? O2B ATP 267 F 1 
HETATM 8 O O3B ATP . . . J 3 -2.539 13.946 39.362 1 121.08 ? O3B ATP 267 F 1 
HETATM 9 P PA ATP . . . J 3 -3.372 15.563 35.739 1 114.49 ? PA ATP 267 F 1 
HETATM 10 O O1A ATP . . . J 3 -4.266 16.79 35.722 1 114.51 ? O1A ATP 267 F 1 
HETATM 11 O O2A ATP . . . J 3 -1.916 15.684 35.322 1 114.39 ? O2A ATP 267 F 1 
HETATM 12 O O3A ATP . . . J 3 -3.437 14.95 37.225 1 116.89 ? O3A ATP 267 F 1 
HETATM 13 O O5' ATP . . . J 3 -4.031 14.376 34.855 1 111.37 ? O5' ATP 267 F 1 
HETATM 14 C C5' ATP . . . J 3 -4.995 14.674 33.841 1 106.11 ? C5' ATP 267 F 1 
HETATM 15 C C4' ATP . . . J 3 -6.247 13.831 34.061 1 101.83 ? C4' ATP 267 F 1 
HETATM 16 O O4' ATP . . . J 3 -6.4 13.471 35.438 1 99.51 ? O4' ATP 267 F 1 
HETATM 17 C C3' ATP . . . J 3 -7.519 14.575 33.672 1 100.12 ? C3' ATP 267 F 1 
HETATM 18 O O3' ATP . . . J 3 -8.063 13.973 32.495 1 100.5 ? O3' ATP 267 F 1 
HETATM 19 C C2' ATP . . . J 3 -8.473 14.388 34.833 1 98.51 ? C2' ATP 267 F 1 
HETATM 20 O O2' ATP . . . J 3 -9.759 13.93 34.401 1 97.88 ? O2' ATP 267 F 1 
HETATM 21 C C1' ATP . . . J 3 -7.8 13.289 35.633 1 96.36 ? C1' ATP 267 F 1 
HETATM 22 N N9 ATP . . . J 3 -8.198 13.261 37.061 1 95.01 ? N9 ATP 267 F 1 
HETATM 23 C C8 ATP . . . J 3 -7.404 13.442 38.13 1 94.16 ? C8 ATP 267 F 1 
HETATM 24 N N7 ATP . . . J 3 -8.115 13.318 39.279 1 93.58 ? N7 ATP 267 F 1 
HETATM 25 C C5 ATP . . . J 3 -9.387 13.047 38.942 1 93.75 ? C5 ATP 267 F 1 
HETATM 26 C C6 ATP . . . J 3 -10.661 12.797 39.651 1 94.36 ? C6 ATP 267 F 1 
HETATM 27 N N6 ATP . . . J 3 -10.726 12.813 41.002 1 94.4 ? N6 ATP 267 F 1 
HETATM 28 N N1 ATP . . . J 3 -11.763 12.554 38.902 1 94.63 ? N1 ATP 267 F 1 
HETATM 29 C C2 ATP . . . J 3 -11.731 12.53 37.556 1 94.24 ? C2 ATP 267 F 1 
HETATM 30 N N3 ATP . . . J 3 -10.61 12.745 36.851 1 93.93 ? N3 ATP 267 F 1 
HETATM 31 C C4 ATP . . . J 3 -9.435 13.005 37.477 1 94.12 ? C4 ATP 267 F 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#