data_2QKX # _model_server_result.job_id XMs-ruedvn8EKDEw84w_KA _model_server_result.datetime_utc '2024-11-25 08:53:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 2QKX # _exptl.entry_id 2QKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.188 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QKX _cell.length_a 94.303 _cell.length_b 94.303 _cell.length_c 288.041 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 47.1515 -81.668794 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 94.303 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H16 N O9 P' _chem_comp.formula_weight 301.188 _chem_comp.id GN1 _chem_comp.mon_nstd_flag n _chem_comp.name 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE;N-ACETYL-D-GLUCOSAMINE-1-PHOSPHATE;N-acetyl-1-O-phosphono-alpha-D-glucosamine;2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucose;2-acetamido-2-deoxy-1-O-phosphono-D-glucose;2-acetamido-2-deoxy-1-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GN1 sing 129 n n C1 O5 GN1 sing 130 n n C1 C2 GN1 sing 131 n n C1 H1 GN1 sing 132 n n OP1 P GN1 sing 133 n n OP1 HOP1 GN1 sing 134 n n P OP3 GN1 doub 135 n n P OP2 GN1 sing 136 n n P O1 GN1 sing 137 n n OP2 HOP2 GN1 sing 138 n n C2 C3 GN1 sing 139 n n C2 N2 GN1 sing 140 n n C2 H2 GN1 sing 141 n n C3 C4 GN1 sing 142 n n C3 O3 GN1 sing 143 n n C3 H3 GN1 sing 144 n n C4 C5 GN1 sing 145 n n C4 O4 GN1 sing 146 n n C4 H4 GN1 sing 147 n n C5 C6 GN1 sing 148 n n C5 O5 GN1 sing 149 n n C5 H5 GN1 sing 150 n n C6 O6 GN1 sing 151 n n C6 H61 GN1 sing 152 n n C6 H62 GN1 sing 153 n n C8 C7 GN1 sing 154 n n C8 H81 GN1 sing 155 n n C8 H82 GN1 sing 156 n n C8 H83 GN1 sing 157 n n O3 HO3 GN1 sing 158 n n O4 HO4 GN1 sing 159 n n N2 C7 GN1 sing 160 n n N2 HN2 GN1 sing 161 n n C7 O7 GN1 doub 162 n n O6 HO6 GN1 sing 163 n n # _pdbx_chem_comp_identifier.comp_id GN1 _pdbx_chem_comp_identifier.identifier a-D-Glcp1PO3NAc _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2QKX _atom_sites.fract_transf_matrix[1][1] 0.010604 _atom_sites.fract_transf_matrix[1][2] 0.006122 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GN1 A 1 401 1 GN1 GN1 . C 3 HOH A 1 402 1 HOH HOH . C 3 HOH A 2 403 2 HOH HOH . C 3 HOH A 3 404 3 HOH HOH . C 3 HOH A 4 405 4 HOH HOH . C 3 HOH A 5 406 5 HOH HOH . C 3 HOH A 6 407 7 HOH HOH . C 3 HOH A 7 408 8 HOH HOH . C 3 HOH A 8 409 9 HOH HOH . C 3 HOH A 9 410 10 HOH HOH . C 3 HOH A 10 411 11 HOH HOH . C 3 HOH A 11 412 13 HOH HOH . C 3 HOH A 12 413 14 HOH HOH . C 3 HOH A 13 414 15 HOH HOH . C 3 HOH A 14 415 17 HOH HOH . C 3 HOH A 15 416 18 HOH HOH . C 3 HOH A 16 417 19 HOH HOH . C 3 HOH A 17 418 20 HOH HOH . C 3 HOH A 18 419 21 HOH HOH . C 3 HOH A 19 420 22 HOH HOH . C 3 HOH A 20 421 23 HOH HOH . C 3 HOH A 21 422 25 HOH HOH . C 3 HOH A 22 423 26 HOH HOH . C 3 HOH A 23 424 30 HOH HOH . C 3 HOH A 24 425 32 HOH HOH . C 3 HOH A 25 426 34 HOH HOH . C 3 HOH A 26 427 36 HOH HOH . C 3 HOH A 27 428 37 HOH HOH . C 3 HOH A 28 429 39 HOH HOH . C 3 HOH A 29 430 45 HOH HOH . C 3 HOH A 30 431 46 HOH HOH . C 3 HOH A 31 432 50 HOH HOH . C 3 HOH A 32 433 58 HOH HOH . C 3 HOH A 33 434 65 HOH HOH . C 3 HOH A 34 435 66 HOH HOH . C 3 HOH A 35 436 69 HOH HOH . C 3 HOH A 36 437 70 HOH HOH . C 3 HOH A 37 438 73 HOH HOH . C 3 HOH A 38 439 74 HOH HOH . C 3 HOH A 39 440 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GN1 . . . B 2 34.034 -3.666 27.259 1 57.81 ? C1 GN1 401 A 1 HETATM 2 O OP1 GN1 . . . B 2 37.26 -2.375 25.643 1 64.17 ? OP1 GN1 401 A 1 HETATM 3 P P GN1 . . . B 2 35.753 -2.264 25.688 1 61.75 ? P GN1 401 A 1 HETATM 4 O OP2 GN1 . . . B 2 35.15 -0.893 25.94 1 63.22 ? OP2 GN1 401 A 1 HETATM 5 O OP3 GN1 . . . B 2 35.077 -2.932 24.375 1 61.72 ? OP3 GN1 401 A 1 HETATM 6 C C2 GN1 . . . B 2 33.932 -3.535 28.792 1 56 ? C2 GN1 401 A 1 HETATM 7 C C3 GN1 . . . B 2 34.902 -4.532 29.441 1 55.14 ? C3 GN1 401 A 1 HETATM 8 C C4 GN1 . . . B 2 34.784 -5.963 28.873 1 54.29 ? C4 GN1 401 A 1 HETATM 9 C C5 GN1 . . . B 2 34.688 -6.028 27.325 1 55.78 ? C5 GN1 401 A 1 HETATM 10 C C6 GN1 . . . B 2 34.352 -7.437 26.775 1 56.73 ? C6 GN1 401 A 1 HETATM 11 C C8 GN1 . . . B 2 33.866 0.118 29.998 1 50.37 ? C8 GN1 401 A 1 HETATM 12 O O1 GN1 . . . B 2 35.363 -3.282 26.868 1 60.23 ? O1 GN1 401 A 1 HETATM 13 O O3 GN1 . . . B 2 34.745 -4.496 30.874 1 55.59 ? O3 GN1 401 A 1 HETATM 14 O O4 GN1 . . . B 2 35.932 -6.673 29.336 1 50.41 ? O4 GN1 401 A 1 HETATM 15 O O5 GN1 . . . B 2 33.756 -5.024 26.84 1 57.03 ? O5 GN1 401 A 1 HETATM 16 N N2 GN1 . . . B 2 34.199 -2.165 29.287 1 54.28 ? N2 GN1 401 A 1 HETATM 17 C C7 GN1 . . . B 2 33.29 -1.183 29.503 1 51.41 ? C7 GN1 401 A 1 HETATM 18 O O6 GN1 . . . B 2 34.809 -7.735 25.433 1 56.23 ? O6 GN1 401 A 1 HETATM 19 O O7 GN1 . . . B 2 32.081 -1.316 29.318 1 48.52 ? O7 GN1 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #