data_2QLA # _model_server_result.job_id 2Cd6vVL9r3LoShKrKnxTCA _model_server_result.datetime_utc '2024-11-12 20:58:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":150}' # _entry.id 2QLA # _exptl.entry_id 2QLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QLA _cell.length_a 88.984 _cell.length_b 66.659 _cell.length_c 68.901 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 7 A MET 7 1_555 E FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 L ZN ZN . D ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 A NE2 HIS 73 A HIS 73 1_555 F ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 A OD2 ASP 74 A ASP 74 1_555 J ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc5 A NE2 HIS 77 A HIS 77 1_555 F ZN ZN . A ZN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc6 A NE2 HIS 102 A HIS 102 1_555 E FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc7 F ZN ZN . A ZN 500 1_555 C OD2 ASP 74 C ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc8 F ZN ZN . A ZN 500 1_555 D NE2 HIS 63 D HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 B SD MET 7 B MET 7 1_555 G FE HEM . B HEM 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc10 B NE2 HIS 63 B HIS 63 1_555 J ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc11 B NE2 HIS 73 B HIS 73 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc12 B OD2 ASP 74 B ASP 74 1_555 L ZN ZN . D ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc13 B NE2 HIS 77 B HIS 77 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc14 B NE2 HIS 102 B HIS 102 1_555 G FE HEM . B HEM 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc15 H ZN ZN . B ZN 502 1_555 C NE2 HIS 63 C HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc16 H ZN ZN . B ZN 502 1_555 D OD2 ASP 74 D ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc17 C SD MET 7 C MET 7 1_555 I FE HEM . C HEM 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc18 C NE2 HIS 73 C HIS 73 1_555 J ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc19 C NE2 HIS 77 C HIS 77 1_555 J ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc20 C NE2 HIS 102 C HIS 102 1_555 I FE HEM . C HEM 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc21 D SD MET 7 D MET 7 1_555 K FE HEM . D HEM 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc22 D NE2 HIS 73 D HIS 73 1_555 L ZN ZN . D ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc23 D NE2 HIS 77 D HIS 77 1_555 L ZN ZN . D ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc24 D NE2 HIS 102 D HIS 102 1_555 K FE HEM . D HEM 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2QLA _atom_sites.fract_transf_matrix[1][1] 0.011238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 150 150 HEM HEM . F 3 ZN A 1 500 500 ZN ZN . G 2 HEM B 1 151 151 HEM HEM . H 3 ZN B 1 502 502 ZN ZN . I 2 HEM C 1 152 152 HEM HEM . J 3 ZN C 1 501 501 ZN ZN . K 2 HEM D 1 153 153 HEM HEM . L 3 ZN D 1 503 503 ZN ZN . M 4 HOH A 1 600 600 HOH HOH . M 4 HOH A 2 601 601 HOH HOH . M 4 HOH A 3 611 611 HOH HOH . M 4 HOH A 4 613 613 HOH HOH . M 4 HOH A 5 615 615 HOH HOH . M 4 HOH A 6 617 617 HOH HOH . M 4 HOH A 7 626 626 HOH HOH . N 4 HOH B 1 604 604 HOH HOH . N 4 HOH B 2 605 605 HOH HOH . N 4 HOH B 3 612 612 HOH HOH . N 4 HOH B 4 616 616 HOH HOH . N 4 HOH B 5 619 619 HOH HOH . N 4 HOH B 6 620 620 HOH HOH . N 4 HOH B 7 623 623 HOH HOH . N 4 HOH B 8 625 625 HOH HOH . N 4 HOH B 9 627 627 HOH HOH . O 4 HOH C 1 608 608 HOH HOH . O 4 HOH C 2 610 610 HOH HOH . O 4 HOH C 3 614 614 HOH HOH . O 4 HOH C 4 618 618 HOH HOH . O 4 HOH C 5 628 628 HOH HOH . O 4 HOH C 6 629 629 HOH HOH . P 4 HOH D 1 602 602 HOH HOH . P 4 HOH D 2 603 603 HOH HOH . P 4 HOH D 3 606 606 HOH HOH . P 4 HOH D 4 607 607 HOH HOH . P 4 HOH D 5 609 609 HOH HOH . P 4 HOH D 6 621 621 HOH HOH . P 4 HOH D 7 622 622 HOH HOH . P 4 HOH D 8 624 624 HOH HOH . P 4 HOH D 9 630 630 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 27.618 -14.2 16.508 1 34.4 ? CHA HEM 150 A 1 HETATM 2 C CHB HEM . . . E 2 23.326 -12.609 15.208 1 32.66 ? CHB HEM 150 A 1 HETATM 3 C CHC HEM . . . E 2 24.762 -8.058 15.708 1 27.32 ? CHC HEM 150 A 1 HETATM 4 C CHD HEM . . . E 2 29.084 -9.6 17.052 1 34.21 ? CHD HEM 150 A 1 HETATM 5 C C1A HEM . . . E 2 26.307 -14.232 16.064 1 34.02 ? C1A HEM 150 A 1 HETATM 6 C C2A HEM . . . E 2 25.419 -15.415 15.847 1 37.31 ? C2A HEM 150 A 1 HETATM 7 C C3A HEM . . . E 2 24.247 -14.887 15.47 1 34.75 ? C3A HEM 150 A 1 HETATM 8 C C4A HEM . . . E 2 24.368 -13.457 15.47 1 33.1 ? C4A HEM 150 A 1 HETATM 9 C CMA HEM . . . E 2 23.015 -15.675 15.075 1 35.59 ? CMA HEM 150 A 1 HETATM 10 C CAA HEM . . . E 2 25.559 -16.949 15.961 1 43.08 ? CAA HEM 150 A 1 HETATM 11 C CBA HEM . . . E 2 26.833 -17.638 16.442 1 52 ? CBA HEM 150 A 1 HETATM 12 C CGA HEM . . . E 2 26.861 -17.861 17.944 1 55.2 ? CGA HEM 150 A 1 HETATM 13 O O1A HEM . . . E 2 26.778 -16.878 18.706 1 56.86 ? O1A HEM 150 A 1 HETATM 14 O O2A HEM . . . E 2 26.971 -19.031 18.363 1 61.02 ? O2A HEM 150 A 1 HETATM 15 C C1B HEM . . . E 2 23.325 -11.239 15.248 1 30.91 ? C1B HEM 150 A 1 HETATM 16 C C2B HEM . . . E 2 22.153 -10.437 14.893 1 28.78 ? C2B HEM 150 A 1 HETATM 17 C C3B HEM . . . E 2 22.573 -9.132 14.999 1 29.85 ? C3B HEM 150 A 1 HETATM 18 C C4B HEM . . . E 2 23.986 -9.158 15.445 1 29.69 ? C4B HEM 150 A 1 HETATM 19 C CMB HEM . . . E 2 20.763 -10.929 14.48 1 21.17 ? CMB HEM 150 A 1 HETATM 20 C CAB HEM . . . E 2 21.809 -8.007 14.673 1 30.11 ? CAB HEM 150 A 1 HETATM 21 C CBB HEM . . . E 2 20.523 -7.762 15.14 1 29.34 ? CBB HEM 150 A 1 HETATM 22 C C1C HEM . . . E 2 26.068 -8.05 16.129 1 26.57 ? C1C HEM 150 A 1 HETATM 23 C C2C HEM . . . E 2 26.869 -6.855 16.342 1 27.87 ? C2C HEM 150 A 1 HETATM 24 C C3C HEM . . . E 2 28.123 -7.284 16.7 1 27.66 ? C3C HEM 150 A 1 HETATM 25 C C4C HEM . . . E 2 28.043 -8.73 16.713 1 30.03 ? C4C HEM 150 A 1 HETATM 26 C CMC HEM . . . E 2 26.397 -5.385 16.227 1 22.13 ? CMC HEM 150 A 1 HETATM 27 C CAC HEM . . . E 2 29.262 -6.509 16.988 1 28.11 ? CAC HEM 150 A 1 HETATM 28 C CBC HEM . . . E 2 29.304 -5.364 17.786 1 25.04 ? CBC HEM 150 A 1 HETATM 29 C C1D HEM . . . E 2 29.064 -10.991 17.05 1 35.14 ? C1D HEM 150 A 1 HETATM 30 C C2D HEM . . . E 2 30.204 -11.824 17.437 1 38.16 ? C2D HEM 150 A 1 HETATM 31 C C3D HEM . . . E 2 29.793 -13.112 17.28 1 39.01 ? C3D HEM 150 A 1 HETATM 32 C C4D HEM . . . E 2 28.406 -13.074 16.789 1 36.11 ? C4D HEM 150 A 1 HETATM 33 C CMD HEM . . . E 2 31.577 -11.365 17.953 1 35.98 ? CMD HEM 150 A 1 HETATM 34 C CAD HEM . . . E 2 30.593 -14.326 17.696 1 43.35 ? CAD HEM 150 A 1 HETATM 35 C CBD HEM . . . E 2 30.022 -14.85 19.009 1 49.64 ? CBD HEM 150 A 1 HETATM 36 C CGD HEM . . . E 2 30.649 -16.162 19.43 1 56.51 ? CGD HEM 150 A 1 HETATM 37 O O1D HEM . . . E 2 31.771 -16.126 19.983 1 59.49 ? O1D HEM 150 A 1 HETATM 38 O O2D HEM . . . E 2 30.027 -17.229 19.195 1 58.24 ? O2D HEM 150 A 1 HETATM 39 N NA HEM . . . E 2 25.628 -13.056 15.822 1 33.3 ? NA HEM 150 A 1 HETATM 40 N NB HEM . . . E 2 24.431 -10.46 15.583 1 31.46 ? NB HEM 150 A 1 HETATM 41 N NC HEM . . . E 2 26.793 -9.172 16.355 1 29.33 ? NC HEM 150 A 1 HETATM 42 N ND HEM . . . E 2 27.971 -11.761 16.662 1 34.27 ? ND HEM 150 A 1 HETATM 43 FE FE HEM . . . E 2 26.151 -11.25 16.011 1 29.16 ? FE HEM 150 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 206 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #