data_2QLB # _model_server_result.job_id PP4WJH-oBg47Q9SvQ1Vgyw _model_server_result.datetime_utc '2025-07-03 17:01:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qlb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":850}' # _entry.id 2QLB # _exptl.entry_id 2QLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QLB _cell.length_a 88.245 _cell.length_b 88.245 _cell.length_c 188.293 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 163 A CYS 186 1_555 E C ASJ 5 E ASJ 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? covale ? covale2 C SG CYS 163 C CYS 486 1_555 F C ASJ 5 F ASJ 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale3 E C ACE 1 E ACE 701 1_555 E N GLU 2 E GLU 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale4 E C MET 4 E MET 704 1_555 E N ASJ 5 E ASJ 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 F C ACE 1 F ACE 801 1_555 F N GLU 2 F GLU 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 ? covale ? covale6 F C MET 4 F MET 804 1_555 F N ASJ 5 F ASJ 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 92 n n C1 O2 CIT sing 93 n n C1 C2 CIT sing 94 n n O2 HO2 CIT sing 95 n n C2 C3 CIT sing 96 n n C2 H21 CIT sing 97 n n C2 H22 CIT sing 98 n n C3 O7 CIT sing 99 n n C3 C4 CIT sing 100 n n C3 C6 CIT sing 101 n n O7 HO7 CIT sing 102 n n C4 C5 CIT sing 103 n n C4 H41 CIT sing 104 n n C4 H42 CIT sing 105 n n C5 O3 CIT doub 106 n n C5 O4 CIT sing 107 n n O4 HO4 CIT sing 108 n n C6 O5 CIT doub 109 n n C6 O6 CIT sing 110 n n O6 HO6 CIT sing 111 n n # _atom_sites.entry_id 2QLB _atom_sites.fract_transf_matrix[1][1] 0.011332 _atom_sites.fract_transf_matrix[1][2] 0.006543 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 CIT D 1 850 850 CIT CIT . I 6 HOH A 1 197 197 HOH HOH . I 6 HOH A 2 198 198 HOH HOH . I 6 HOH A 3 199 199 HOH HOH . I 6 HOH A 4 200 200 HOH HOH . I 6 HOH A 5 201 201 HOH HOH . I 6 HOH A 6 202 202 HOH HOH . I 6 HOH A 7 203 203 HOH HOH . I 6 HOH A 8 204 204 HOH HOH . I 6 HOH A 9 205 205 HOH HOH . I 6 HOH A 10 206 206 HOH HOH . I 6 HOH A 11 207 207 HOH HOH . I 6 HOH A 12 208 208 HOH HOH . I 6 HOH A 13 209 209 HOH HOH . I 6 HOH A 14 210 210 HOH HOH . I 6 HOH A 15 211 211 HOH HOH . I 6 HOH A 16 212 212 HOH HOH . I 6 HOH A 17 213 213 HOH HOH . I 6 HOH A 18 214 214 HOH HOH . I 6 HOH A 19 215 215 HOH HOH . I 6 HOH A 20 216 216 HOH HOH . I 6 HOH A 21 217 217 HOH HOH . I 6 HOH A 22 218 218 HOH HOH . I 6 HOH A 23 219 219 HOH HOH . I 6 HOH A 24 220 220 HOH HOH . I 6 HOH A 25 221 221 HOH HOH . I 6 HOH A 26 222 222 HOH HOH . I 6 HOH A 27 223 223 HOH HOH . I 6 HOH A 28 224 224 HOH HOH . I 6 HOH A 29 225 225 HOH HOH . I 6 HOH A 30 226 226 HOH HOH . I 6 HOH A 31 227 227 HOH HOH . I 6 HOH A 32 228 228 HOH HOH . I 6 HOH A 33 229 229 HOH HOH . I 6 HOH A 34 230 230 HOH HOH . I 6 HOH A 35 231 231 HOH HOH . I 6 HOH A 36 232 232 HOH HOH . I 6 HOH A 37 233 233 HOH HOH . I 6 HOH A 38 234 234 HOH HOH . I 6 HOH A 39 235 235 HOH HOH . I 6 HOH A 40 236 236 HOH HOH . I 6 HOH A 41 237 237 HOH HOH . I 6 HOH A 42 238 238 HOH HOH . I 6 HOH A 43 239 239 HOH HOH . I 6 HOH A 44 240 240 HOH HOH . I 6 HOH A 45 241 241 HOH HOH . I 6 HOH A 46 242 242 HOH HOH . I 6 HOH A 47 243 243 HOH HOH . I 6 HOH A 48 244 244 HOH HOH . I 6 HOH A 49 245 245 HOH HOH . I 6 HOH A 50 246 246 HOH HOH . I 6 HOH A 51 247 247 HOH HOH . I 6 HOH A 52 248 248 HOH HOH . I 6 HOH A 53 249 249 HOH HOH . I 6 HOH A 54 250 250 HOH HOH . I 6 HOH A 55 251 251 HOH HOH . I 6 HOH A 56 252 252 HOH HOH . I 6 HOH A 57 253 253 HOH HOH . I 6 HOH A 58 254 254 HOH HOH . I 6 HOH A 59 255 255 HOH HOH . I 6 HOH A 60 256 256 HOH HOH . I 6 HOH A 61 257 257 HOH HOH . J 6 HOH B 1 12 12 HOH HOH . J 6 HOH B 2 30 30 HOH HOH . J 6 HOH B 3 36 36 HOH HOH . J 6 HOH B 4 38 38 HOH HOH . J 6 HOH B 5 46 46 HOH HOH . J 6 HOH B 6 47 47 HOH HOH . J 6 HOH B 7 48 48 HOH HOH . J 6 HOH B 8 50 50 HOH HOH . J 6 HOH B 9 58 58 HOH HOH . J 6 HOH B 10 59 59 HOH HOH . J 6 HOH B 11 62 62 HOH HOH . J 6 HOH B 12 65 65 HOH HOH . J 6 HOH B 13 68 68 HOH HOH . J 6 HOH B 14 76 76 HOH HOH . J 6 HOH B 15 79 79 HOH HOH . J 6 HOH B 16 85 85 HOH HOH . J 6 HOH B 17 998 998 HOH HOH . J 6 HOH B 18 1006 1006 HOH HOH . J 6 HOH B 19 1020 1020 HOH HOH . J 6 HOH B 20 1041 1041 HOH HOH . J 6 HOH B 21 1063 1063 HOH HOH . J 6 HOH B 22 1075 1075 HOH HOH . J 6 HOH B 23 1095 1095 HOH HOH . J 6 HOH B 24 1097 1097 HOH HOH . J 6 HOH B 25 1105 1105 HOH HOH . J 6 HOH B 26 1110 1110 HOH HOH . J 6 HOH B 27 1119 1119 HOH HOH . J 6 HOH B 28 1180 1180 HOH HOH . K 6 HOH C 1 1 1 HOH HOH . K 6 HOH C 2 2 2 HOH HOH . K 6 HOH C 3 3 3 HOH HOH . K 6 HOH C 4 4 4 HOH HOH . K 6 HOH C 5 5 5 HOH HOH . K 6 HOH C 6 6 6 HOH HOH . K 6 HOH C 7 7 7 HOH HOH . K 6 HOH C 8 8 8 HOH HOH . K 6 HOH C 9 10 10 HOH HOH . K 6 HOH C 10 11 11 HOH HOH . K 6 HOH C 11 13 13 HOH HOH . K 6 HOH C 12 14 14 HOH HOH . K 6 HOH C 13 15 15 HOH HOH . K 6 HOH C 14 17 17 HOH HOH . K 6 HOH C 15 26 26 HOH HOH . K 6 HOH C 16 27 27 HOH HOH . K 6 HOH C 17 28 28 HOH HOH . K 6 HOH C 18 29 29 HOH HOH . K 6 HOH C 19 34 34 HOH HOH . K 6 HOH C 20 37 37 HOH HOH . K 6 HOH C 21 39 39 HOH HOH . K 6 HOH C 22 41 41 HOH HOH . K 6 HOH C 23 42 42 HOH HOH . K 6 HOH C 24 44 44 HOH HOH . K 6 HOH C 25 51 51 HOH HOH . K 6 HOH C 26 52 52 HOH HOH . K 6 HOH C 27 53 53 HOH HOH . K 6 HOH C 28 55 55 HOH HOH . K 6 HOH C 29 63 63 HOH HOH . K 6 HOH C 30 66 66 HOH HOH . K 6 HOH C 31 70 70 HOH HOH . K 6 HOH C 32 71 71 HOH HOH . K 6 HOH C 33 73 73 HOH HOH . K 6 HOH C 34 75 75 HOH HOH . K 6 HOH C 35 77 77 HOH HOH . K 6 HOH C 36 78 78 HOH HOH . K 6 HOH C 37 81 81 HOH HOH . K 6 HOH C 38 82 82 HOH HOH . K 6 HOH C 39 83 83 HOH HOH . K 6 HOH C 40 86 86 HOH HOH . K 6 HOH C 41 87 87 HOH HOH . K 6 HOH C 42 88 88 HOH HOH . K 6 HOH C 43 92 92 HOH HOH . K 6 HOH C 44 93 93 HOH HOH . K 6 HOH C 45 997 997 HOH HOH . K 6 HOH C 46 1002 1002 HOH HOH . K 6 HOH C 47 1003 1003 HOH HOH . K 6 HOH C 48 1008 1008 HOH HOH . K 6 HOH C 49 1010 1010 HOH HOH . K 6 HOH C 50 1017 1017 HOH HOH . K 6 HOH C 51 1018 1018 HOH HOH . K 6 HOH C 52 1019 1019 HOH HOH . K 6 HOH C 53 1022 1022 HOH HOH . K 6 HOH C 54 1025 1025 HOH HOH . K 6 HOH C 55 1029 1029 HOH HOH . K 6 HOH C 56 1033 1033 HOH HOH . K 6 HOH C 57 1037 1037 HOH HOH . K 6 HOH C 58 1042 1042 HOH HOH . K 6 HOH C 59 1046 1046 HOH HOH . K 6 HOH C 60 1047 1047 HOH HOH . K 6 HOH C 61 1051 1051 HOH HOH . K 6 HOH C 62 1054 1054 HOH HOH . K 6 HOH C 63 1055 1055 HOH HOH . K 6 HOH C 64 1065 1065 HOH HOH . K 6 HOH C 65 1072 1072 HOH HOH . K 6 HOH C 66 1073 1073 HOH HOH . K 6 HOH C 67 1074 1074 HOH HOH . K 6 HOH C 68 1076 1076 HOH HOH . K 6 HOH C 69 1079 1079 HOH HOH . K 6 HOH C 70 1080 1080 HOH HOH . K 6 HOH C 71 1084 1084 HOH HOH . K 6 HOH C 72 1085 1085 HOH HOH . K 6 HOH C 73 1087 1087 HOH HOH . K 6 HOH C 74 1088 1088 HOH HOH . K 6 HOH C 75 1091 1091 HOH HOH . K 6 HOH C 76 1094 1094 HOH HOH . K 6 HOH C 77 1098 1098 HOH HOH . K 6 HOH C 78 1101 1101 HOH HOH . K 6 HOH C 79 1106 1106 HOH HOH . K 6 HOH C 80 1107 1107 HOH HOH . K 6 HOH C 81 1122 1122 HOH HOH . K 6 HOH C 82 1123 1123 HOH HOH . K 6 HOH C 83 1124 1124 HOH HOH . K 6 HOH C 84 1126 1126 HOH HOH . K 6 HOH C 85 1135 1135 HOH HOH . K 6 HOH C 86 1140 1140 HOH HOH . K 6 HOH C 87 1148 1148 HOH HOH . K 6 HOH C 88 1154 1154 HOH HOH . K 6 HOH C 89 1155 1155 HOH HOH . K 6 HOH C 90 1165 1165 HOH HOH . K 6 HOH C 91 1183 1183 HOH HOH . L 6 HOH D 1 9 9 HOH HOH . L 6 HOH D 2 21 21 HOH HOH . L 6 HOH D 3 23 23 HOH HOH . L 6 HOH D 4 32 32 HOH HOH . L 6 HOH D 5 35 35 HOH HOH . L 6 HOH D 6 43 43 HOH HOH . L 6 HOH D 7 49 49 HOH HOH . L 6 HOH D 8 54 54 HOH HOH . L 6 HOH D 9 57 57 HOH HOH . L 6 HOH D 10 60 60 HOH HOH . L 6 HOH D 11 61 61 HOH HOH . L 6 HOH D 12 64 64 HOH HOH . L 6 HOH D 13 74 74 HOH HOH . L 6 HOH D 14 80 80 HOH HOH . L 6 HOH D 15 84 84 HOH HOH . L 6 HOH D 16 1000 1000 HOH HOH . L 6 HOH D 17 1001 1001 HOH HOH . L 6 HOH D 18 1009 1009 HOH HOH . L 6 HOH D 19 1031 1031 HOH HOH . L 6 HOH D 20 1034 1034 HOH HOH . L 6 HOH D 21 1044 1044 HOH HOH . L 6 HOH D 22 1056 1056 HOH HOH . L 6 HOH D 23 1070 1070 HOH HOH . L 6 HOH D 24 1078 1078 HOH HOH . L 6 HOH D 25 1086 1086 HOH HOH . L 6 HOH D 26 1117 1117 HOH HOH . L 6 HOH D 27 1120 1120 HOH HOH . L 6 HOH D 28 1138 1138 HOH HOH . L 6 HOH D 29 1173 1173 HOH HOH . L 6 HOH D 30 1179 1179 HOH HOH . L 6 HOH D 31 1182 1182 HOH HOH . L 6 HOH D 32 1192 1192 HOH HOH . M 6 HOH E 1 1151 1151 HOH HOH . N 6 HOH F 1 1007 1007 HOH HOH . N 6 HOH F 2 1100 1100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . H 5 -57.924 26.451 -22.808 1 119.18 ? C1 CIT 850 D 1 HETATM 2 O O1 CIT . . . H 5 -59.034 26.176 -22.436 1 118.97 ? O1 CIT 850 D 1 HETATM 3 O O2 CIT . . . H 5 -57.242 27.425 -22.175 1 118.58 ? O2 CIT 850 D 1 HETATM 4 C C2 CIT . . . H 5 -57.166 25.466 -23.681 1 119.34 ? C2 CIT 850 D 1 HETATM 5 C C3 CIT . . . H 5 -57.881 25.086 -25.023 1 119.39 ? C3 CIT 850 D 1 HETATM 6 O O7 CIT . . . H 5 -58.829 26.125 -25.399 1 119.54 ? O7 CIT 850 D 1 HETATM 7 C C4 CIT . . . H 5 -58.556 23.661 -24.883 1 119.87 ? C4 CIT 850 D 1 HETATM 8 C C5 CIT . . . H 5 -60.06 23.544 -24.58 1 119.95 ? C5 CIT 850 D 1 HETATM 9 O O3 CIT . . . H 5 -60.668 22.76 -25.243 1 120.17 ? O3 CIT 850 D 1 HETATM 10 O O4 CIT . . . H 5 -60.494 23.64 -23.311 1 120.48 ? O4 CIT 850 D 1 HETATM 11 C C6 CIT . . . H 5 -56.836 24.91 -26.154 1 119.03 ? C6 CIT 850 D 1 HETATM 12 O O5 CIT . . . H 5 -57.134 24.293 -27.163 1 118.41 ? O5 CIT 850 D 1 HETATM 13 O O6 CIT . . . H 5 -55.521 25.157 -25.943 1 118.63 ? O6 CIT 850 D 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #