data_2QLJ # _model_server_result.job_id qsFPWPOZ12v3wtL1--Y_GA _model_server_result.datetime_utc '2024-12-27 00:33:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qlj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":850}' # _entry.id 2QLJ # _exptl.entry_id 2QLJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QLJ _cell.length_a 88.504 _cell.length_b 88.504 _cell.length_c 187.22 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QLJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 163 A CYS 186 1_555 E C ASJ 5 E ASJ 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? covale ? covale2 C SG CYS 163 C CYS 486 1_555 F C ASJ 5 F ASJ 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? covale ? covale3 E C ACE 1 E ACE 701 1_555 E N TRP 2 E TRP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.245 ? covale ? covale4 E C HIS 4 E HIS 704 1_555 E N ASJ 5 E ASJ 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 F C ACE 1 F ACE 801 1_555 F N TRP 2 F TRP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 F C HIS 4 F HIS 804 1_555 F N ASJ 5 F ASJ 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 92 n n C1 O2 CIT sing 93 n n C1 C2 CIT sing 94 n n O2 HO2 CIT sing 95 n n C2 C3 CIT sing 96 n n C2 H21 CIT sing 97 n n C2 H22 CIT sing 98 n n C3 O7 CIT sing 99 n n C3 C4 CIT sing 100 n n C3 C6 CIT sing 101 n n O7 HO7 CIT sing 102 n n C4 C5 CIT sing 103 n n C4 H41 CIT sing 104 n n C4 H42 CIT sing 105 n n C5 O3 CIT doub 106 n n C5 O4 CIT sing 107 n n O4 HO4 CIT sing 108 n n C6 O5 CIT doub 109 n n C6 O6 CIT sing 110 n n O6 HO6 CIT sing 111 n n # _atom_sites.entry_id 2QLJ _atom_sites.fract_transf_matrix[1][1] 0.011299 _atom_sites.fract_transf_matrix[1][2] 0.006523 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 CIT A 1 850 850 CIT CIT . I 6 HOH A 1 851 851 HOH HOH . I 6 HOH A 2 852 852 HOH HOH . I 6 HOH A 3 853 853 HOH HOH . I 6 HOH A 4 854 854 HOH HOH . I 6 HOH A 5 855 855 HOH HOH . I 6 HOH A 6 856 856 HOH HOH . I 6 HOH A 7 857 857 HOH HOH . I 6 HOH A 8 858 858 HOH HOH . I 6 HOH A 9 859 859 HOH HOH . I 6 HOH A 10 860 860 HOH HOH . I 6 HOH A 11 861 861 HOH HOH . J 6 HOH B 1 5 5 HOH HOH . J 6 HOH B 2 15 15 HOH HOH . J 6 HOH B 3 17 17 HOH HOH . J 6 HOH B 4 23 23 HOH HOH . J 6 HOH B 5 25 25 HOH HOH . J 6 HOH B 6 36 36 HOH HOH . J 6 HOH B 7 37 37 HOH HOH . J 6 HOH B 8 42 42 HOH HOH . K 6 HOH C 1 3 3 HOH HOH . K 6 HOH C 2 4 4 HOH HOH . K 6 HOH C 3 8 8 HOH HOH . K 6 HOH C 4 9 9 HOH HOH . K 6 HOH C 5 14 14 HOH HOH . K 6 HOH C 6 16 16 HOH HOH . K 6 HOH C 7 18 18 HOH HOH . K 6 HOH C 8 19 19 HOH HOH . K 6 HOH C 9 20 20 HOH HOH . K 6 HOH C 10 21 21 HOH HOH . K 6 HOH C 11 22 22 HOH HOH . K 6 HOH C 12 26 26 HOH HOH . K 6 HOH C 13 27 27 HOH HOH . K 6 HOH C 14 28 28 HOH HOH . K 6 HOH C 15 29 29 HOH HOH . K 6 HOH C 16 35 35 HOH HOH . K 6 HOH C 17 40 40 HOH HOH . K 6 HOH C 18 46 46 HOH HOH . K 6 HOH C 19 48 48 HOH HOH . K 6 HOH C 20 49 49 HOH HOH . K 6 HOH C 21 50 50 HOH HOH . L 6 HOH D 1 2 2 HOH HOH . L 6 HOH D 2 6 6 HOH HOH . L 6 HOH D 3 7 7 HOH HOH . L 6 HOH D 4 12 12 HOH HOH . L 6 HOH D 5 13 13 HOH HOH . L 6 HOH D 6 24 24 HOH HOH . L 6 HOH D 7 34 34 HOH HOH . L 6 HOH D 8 41 41 HOH HOH . M 6 HOH F 1 30 30 HOH HOH . M 6 HOH F 2 38 38 HOH HOH . M 6 HOH F 3 39 39 HOH HOH . M 6 HOH F 4 52 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . H 5 -58.292 27.104 -22.986 1 112.23 ? C1 CIT 850 A 1 HETATM 2 O O1 CIT . . . H 5 -59.25 26.556 -22.48 1 111.02 ? O1 CIT 850 A 1 HETATM 3 O O2 CIT . . . H 5 -57.777 28.19 -22.371 1 110.4 ? O2 CIT 850 A 1 HETATM 4 C C2 CIT . . . H 5 -57.433 26.356 -24.023 1 112.57 ? C2 CIT 850 A 1 HETATM 5 C C3 CIT . . . H 5 -58.253 25.612 -25.155 1 113.05 ? C3 CIT 850 A 1 HETATM 6 O O7 CIT . . . H 5 -59.382 26.419 -25.553 1 113.4 ? O7 CIT 850 A 1 HETATM 7 C C4 CIT . . . H 5 -58.712 24.202 -24.679 1 112.62 ? C4 CIT 850 A 1 HETATM 8 C C5 CIT . . . H 5 -59.983 23.7 -25.355 1 111 ? C5 CIT 850 A 1 HETATM 9 O O3 CIT . . . H 5 -59.937 23.112 -26.421 1 110.47 ? O3 CIT 850 A 1 HETATM 10 O O4 CIT . . . H 5 -61.082 23.626 -24.604 1 109.49 ? O4 CIT 850 A 1 HETATM 11 C C6 CIT . . . H 5 -57.354 25.369 -26.362 1 112.99 ? C6 CIT 850 A 1 HETATM 12 O O5 CIT . . . H 5 -57.859 25.038 -27.415 1 113.21 ? O5 CIT 850 A 1 HETATM 13 O O6 CIT . . . H 5 -56.026 25.184 -26.192 1 111.82 ? O6 CIT 850 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #