data_2QLL # _model_server_result.job_id AbcT4KlMeNtZzLMQ_MRvMg _model_server_result.datetime_utc '2025-03-25 16:08:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 2QLL # _exptl.entry_id 2QLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QLL _cell.length_a 123.986 _cell.length_b 123.986 _cell.length_c 125.695 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 125.695 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 14 A ILE 13 1_555 A N SEP 15 A SEP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C SEP 15 A SEP 14 1_555 A N ILE 16 A ILE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 2QLL _atom_sites.fract_transf_matrix[1][1] 0.008065 _atom_sites.fract_transf_matrix[1][2] 0.004657 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PLP A 1 999 999 PLP PLP . D 4 HOH A 1 1000 1 HOH HOH . D 4 HOH A 2 1001 2 HOH HOH . D 4 HOH A 3 1002 3 HOH HOH . D 4 HOH A 4 1003 4 HOH HOH . D 4 HOH A 5 1004 5 HOH HOH . D 4 HOH A 6 1005 6 HOH HOH . D 4 HOH A 7 1006 7 HOH HOH . D 4 HOH A 8 1007 8 HOH HOH . D 4 HOH A 9 1008 10 HOH HOH . D 4 HOH A 10 1009 11 HOH HOH . D 4 HOH A 11 1010 12 HOH HOH . D 4 HOH A 12 1011 14 HOH HOH . D 4 HOH A 13 1012 15 HOH HOH . D 4 HOH A 14 1013 19 HOH HOH . D 4 HOH A 15 1014 20 HOH HOH . D 4 HOH A 16 1015 21 HOH HOH . D 4 HOH A 17 1016 23 HOH HOH . D 4 HOH A 18 1017 24 HOH HOH . D 4 HOH A 19 1018 25 HOH HOH . D 4 HOH A 20 1019 26 HOH HOH . D 4 HOH A 21 1020 27 HOH HOH . D 4 HOH A 22 1021 28 HOH HOH . D 4 HOH A 23 1022 29 HOH HOH . D 4 HOH A 24 1023 31 HOH HOH . D 4 HOH A 25 1024 33 HOH HOH . D 4 HOH A 26 1025 34 HOH HOH . D 4 HOH A 27 1026 35 HOH HOH . D 4 HOH A 28 1027 37 HOH HOH . D 4 HOH A 29 1028 39 HOH HOH . D 4 HOH A 30 1029 40 HOH HOH . D 4 HOH A 31 1030 42 HOH HOH . D 4 HOH A 32 1031 43 HOH HOH . D 4 HOH A 33 1032 44 HOH HOH . D 4 HOH A 34 1033 45 HOH HOH . D 4 HOH A 35 1034 46 HOH HOH . D 4 HOH A 36 1035 50 HOH HOH . D 4 HOH A 37 1036 53 HOH HOH . D 4 HOH A 38 1037 55 HOH HOH . D 4 HOH A 39 1038 56 HOH HOH . D 4 HOH A 40 1039 57 HOH HOH . D 4 HOH A 41 1040 60 HOH HOH . D 4 HOH A 42 1041 61 HOH HOH . D 4 HOH A 43 1042 62 HOH HOH . D 4 HOH A 44 1043 63 HOH HOH . D 4 HOH A 45 1044 64 HOH HOH . D 4 HOH A 46 1045 66 HOH HOH . D 4 HOH A 47 1046 67 HOH HOH . D 4 HOH A 48 1047 68 HOH HOH . D 4 HOH A 49 1048 69 HOH HOH . D 4 HOH A 50 1049 70 HOH HOH . D 4 HOH A 51 1050 71 HOH HOH . D 4 HOH A 52 1051 72 HOH HOH . D 4 HOH A 53 1052 73 HOH HOH . D 4 HOH A 54 1053 75 HOH HOH . D 4 HOH A 55 1054 77 HOH HOH . D 4 HOH A 56 1055 79 HOH HOH . D 4 HOH A 57 1056 80 HOH HOH . D 4 HOH A 58 1057 84 HOH HOH . D 4 HOH A 59 1058 85 HOH HOH . D 4 HOH A 60 1059 89 HOH HOH . D 4 HOH A 61 1060 91 HOH HOH . D 4 HOH A 62 1061 93 HOH HOH . D 4 HOH A 63 1062 98 HOH HOH . D 4 HOH A 64 1063 102 HOH HOH . D 4 HOH A 65 1064 103 HOH HOH . D 4 HOH A 66 1065 104 HOH HOH . D 4 HOH A 67 1066 106 HOH HOH . D 4 HOH A 68 1067 107 HOH HOH . D 4 HOH A 69 1068 108 HOH HOH . D 4 HOH A 70 1069 111 HOH HOH . D 4 HOH A 71 1070 112 HOH HOH . D 4 HOH A 72 1071 113 HOH HOH . D 4 HOH A 73 1072 114 HOH HOH . D 4 HOH A 74 1073 115 HOH HOH . D 4 HOH A 75 1074 116 HOH HOH . D 4 HOH A 76 1075 117 HOH HOH . D 4 HOH A 77 1076 118 HOH HOH . D 4 HOH A 78 1077 119 HOH HOH . D 4 HOH A 79 1078 121 HOH HOH . D 4 HOH A 80 1079 122 HOH HOH . D 4 HOH A 81 1080 128 HOH HOH . D 4 HOH A 82 1081 129 HOH HOH . D 4 HOH A 83 1082 133 HOH HOH . D 4 HOH A 84 1083 134 HOH HOH . D 4 HOH A 85 1084 135 HOH HOH . D 4 HOH A 86 1085 139 HOH HOH . D 4 HOH A 87 1086 142 HOH HOH . D 4 HOH A 88 1087 145 HOH HOH . D 4 HOH A 89 1088 148 HOH HOH . D 4 HOH A 90 1089 149 HOH HOH . D 4 HOH A 91 1090 152 HOH HOH . D 4 HOH A 92 1091 157 HOH HOH . D 4 HOH A 93 1092 158 HOH HOH . D 4 HOH A 94 1093 159 HOH HOH . D 4 HOH A 95 1094 160 HOH HOH . D 4 HOH A 96 1095 162 HOH HOH . D 4 HOH A 97 1096 163 HOH HOH . D 4 HOH A 98 1097 168 HOH HOH . D 4 HOH A 99 1098 170 HOH HOH . D 4 HOH A 100 1099 171 HOH HOH . D 4 HOH A 101 1100 172 HOH HOH . D 4 HOH A 102 1101 175 HOH HOH . D 4 HOH A 103 1102 176 HOH HOH . D 4 HOH A 104 1103 178 HOH HOH . D 4 HOH A 105 1104 180 HOH HOH . D 4 HOH A 106 1105 181 HOH HOH . D 4 HOH A 107 1106 182 HOH HOH . D 4 HOH A 108 1107 183 HOH HOH . D 4 HOH A 109 1108 184 HOH HOH . D 4 HOH A 110 1109 185 HOH HOH . D 4 HOH A 111 1110 189 HOH HOH . D 4 HOH A 112 1111 190 HOH HOH . D 4 HOH A 113 1112 198 HOH HOH . D 4 HOH A 114 1113 200 HOH HOH . D 4 HOH A 115 1114 203 HOH HOH . D 4 HOH A 116 1115 206 HOH HOH . D 4 HOH A 117 1116 229 HOH HOH . D 4 HOH A 118 1117 231 HOH HOH . D 4 HOH A 119 1118 233 HOH HOH . D 4 HOH A 120 1119 235 HOH HOH . D 4 HOH A 121 1120 237 HOH HOH . D 4 HOH A 122 1121 239 HOH HOH . D 4 HOH A 123 1122 243 HOH HOH . D 4 HOH A 124 1123 248 HOH HOH . D 4 HOH A 125 1124 254 HOH HOH . D 4 HOH A 126 1125 257 HOH HOH . D 4 HOH A 127 1126 258 HOH HOH . D 4 HOH A 128 1127 266 HOH HOH . D 4 HOH A 129 1128 271 HOH HOH . D 4 HOH A 130 1129 273 HOH HOH . D 4 HOH A 131 1130 280 HOH HOH . D 4 HOH A 132 1131 282 HOH HOH . D 4 HOH A 133 1132 284 HOH HOH . D 4 HOH A 134 1133 288 HOH HOH . D 4 HOH A 135 1134 289 HOH HOH . D 4 HOH A 136 1135 290 HOH HOH . D 4 HOH A 137 1136 292 HOH HOH . D 4 HOH A 138 1137 293 HOH HOH . D 4 HOH A 139 1138 295 HOH HOH . D 4 HOH A 140 1139 310 HOH HOH . D 4 HOH A 141 1140 311 HOH HOH . D 4 HOH A 142 1141 312 HOH HOH . D 4 HOH A 143 1142 317 HOH HOH . D 4 HOH A 144 1143 329 HOH HOH . D 4 HOH A 145 1144 340 HOH HOH . D 4 HOH A 146 1145 346 HOH HOH . D 4 HOH A 147 1146 352 HOH HOH . D 4 HOH A 148 1147 357 HOH HOH . D 4 HOH A 149 1148 364 HOH HOH . D 4 HOH A 150 1149 373 HOH HOH . D 4 HOH A 151 1150 378 HOH HOH . D 4 HOH A 152 1151 384 HOH HOH . D 4 HOH A 153 1152 387 HOH HOH . E 4 HOH B 1 16 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 3 25.646 72.665 37.742 1 56.25 ? N1 PLP 999 A 1 HETATM 2 C C2 PLP . . . C 3 24.837 71.653 38.04 1 53.83 ? C2 PLP 999 A 1 HETATM 3 C C2A PLP . . . C 3 24.159 71.556 39.383 1 52.71 ? C2A PLP 999 A 1 HETATM 4 C C3 PLP . . . C 3 24.681 70.736 37.024 1 52.2 ? C3 PLP 999 A 1 HETATM 5 O O3 PLP . . . C 3 23.887 69.766 37.319 1 51.82 ? O3 PLP 999 A 1 HETATM 6 C C4 PLP . . . C 3 25.292 70.795 35.805 1 53.14 ? C4 PLP 999 A 1 HETATM 7 C C4A PLP . . . C 3 25.372 69.981 34.506 1 52.65 ? C4A PLP 999 A 1 HETATM 8 C C5 PLP . . . C 3 26.042 71.724 35.475 1 56.66 ? C5 PLP 999 A 1 HETATM 9 C C6 PLP . . . C 3 26.236 72.662 36.423 1 56.04 ? C6 PLP 999 A 1 HETATM 10 C C5A PLP . . . C 3 26.512 71.436 33.976 1 65.66 ? C5A PLP 999 A 1 HETATM 11 O O4P PLP . . . C 3 27.144 72.585 33.371 1 74.95 ? O4P PLP 999 A 1 HETATM 12 P P PLP . . . C 3 26.647 73.682 32.268 1 79.74 ? P PLP 999 A 1 HETATM 13 O O1P PLP . . . C 3 27.283 75.027 32.648 1 76.96 ? O1P PLP 999 A 1 HETATM 14 O O2P PLP . . . C 3 27.568 72.943 31.153 1 81.7 ? O2P PLP 999 A 1 HETATM 15 O O3P PLP . . . C 3 25.109 73.441 32.36 1 80.42 ? O3P PLP 999 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #