data_2QM2 # _model_server_result.job_id xJMOOvkufIugaQkI85qMEA _model_server_result.datetime_utc '2025-04-01 10:02:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":204}' # _entry.id 2QM2 # _exptl.entry_id 2QM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QM2 _cell.length_a 87.622 _cell.length_b 90.886 _cell.length_c 72.445 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 87.622 0 36.2225 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 9 A GLY 6 1_555 A N MSE 10 A MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 10 A MSE 7 1_555 A N LYS 11 A LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C LYS 11 A LYS 8 1_555 A N MSE 12 A MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 12 A MSE 9 1_555 A N GLU 13 A GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C THR 33 A THR 30 1_555 A N MSE 34 A MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C MSE 34 A MSE 31 1_555 A N ALA 35 A ALA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C PHE 107 A PHE 104 1_555 A N MSE 108 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 108 A MSE 105 1_555 A N VAL 109 A VAL 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 B C MSE 10 B MSE 7 1_555 B N LYS 11 B LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 B C LYS 11 B LYS 8 1_555 B N MSE 12 B MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 B C MSE 12 B MSE 9 1_555 B N GLU 13 B GLU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C THR 33 B THR 30 1_555 B N MSE 34 B MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 B C MSE 34 B MSE 31 1_555 B N ALA 35 B ALA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale14 B C PHE 107 B PHE 104 1_555 B N MSE 108 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale15 B C MSE 108 B MSE 105 1_555 B N VAL 109 B VAL 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A O LEU 72 A LEU 69 1_555 E NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 A O GLU 113 A GLU 110 1_555 C K K . A K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc3 A O ILE 115 A ILE 112 1_555 C K K . A K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc4 C K K . A K 201 1_555 B O ASN 73 B ASN 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc5 C K K . A K 201 1_555 H O HOH . B HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc6 B O GLU 113 B GLU 110 1_555 E NA NA . B NA 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc7 B O ILE 115 B ILE 112 1_555 E NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc8 E NA NA . B NA 202 1_555 H O HOH . B HOH 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc9 E NA NA . B NA 202 1_555 H O HOH . B HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2QM2 _atom_sites.fract_transf_matrix[1][1] 0.011413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 201 1 K K . D 3 GOL A 1 204 4 GOL GOL . E 4 NA B 1 202 2 NA NA . F 5 TRS B 1 203 3 TRS TRS . G 6 HOH A 1 205 1 HOH HOH . G 6 HOH A 2 206 2 HOH HOH . G 6 HOH A 3 207 11 HOH HOH . G 6 HOH A 4 208 12 HOH HOH . G 6 HOH A 5 209 16 HOH HOH . G 6 HOH A 6 210 18 HOH HOH . G 6 HOH A 7 211 19 HOH HOH . G 6 HOH A 8 212 21 HOH HOH . G 6 HOH A 9 213 24 HOH HOH . G 6 HOH A 10 214 25 HOH HOH . G 6 HOH A 11 215 26 HOH HOH . G 6 HOH A 12 216 28 HOH HOH . G 6 HOH A 13 217 31 HOH HOH . G 6 HOH A 14 218 34 HOH HOH . G 6 HOH A 15 219 36 HOH HOH . G 6 HOH A 16 220 40 HOH HOH . G 6 HOH A 17 221 41 HOH HOH . G 6 HOH A 18 222 42 HOH HOH . G 6 HOH A 19 223 43 HOH HOH . G 6 HOH A 20 224 44 HOH HOH . G 6 HOH A 21 225 45 HOH HOH . G 6 HOH A 22 226 46 HOH HOH . G 6 HOH A 23 227 47 HOH HOH . G 6 HOH A 24 228 49 HOH HOH . G 6 HOH A 25 229 55 HOH HOH . G 6 HOH A 26 230 58 HOH HOH . G 6 HOH A 27 231 59 HOH HOH . G 6 HOH A 28 232 60 HOH HOH . G 6 HOH A 29 233 61 HOH HOH . G 6 HOH A 30 234 64 HOH HOH . G 6 HOH A 31 235 66 HOH HOH . G 6 HOH A 32 236 67 HOH HOH . G 6 HOH A 33 237 68 HOH HOH . G 6 HOH A 34 238 69 HOH HOH . G 6 HOH A 35 239 70 HOH HOH . G 6 HOH A 36 240 73 HOH HOH . G 6 HOH A 37 241 74 HOH HOH . G 6 HOH A 38 242 75 HOH HOH . G 6 HOH A 39 243 76 HOH HOH . G 6 HOH A 40 244 77 HOH HOH . G 6 HOH A 41 245 79 HOH HOH . G 6 HOH A 42 246 80 HOH HOH . G 6 HOH A 43 247 81 HOH HOH . G 6 HOH A 44 248 82 HOH HOH . G 6 HOH A 45 249 84 HOH HOH . G 6 HOH A 46 250 85 HOH HOH . G 6 HOH A 47 251 87 HOH HOH . G 6 HOH A 48 252 95 HOH HOH . G 6 HOH A 49 253 96 HOH HOH . G 6 HOH A 50 254 100 HOH HOH . G 6 HOH A 51 255 101 HOH HOH . G 6 HOH A 52 256 106 HOH HOH . G 6 HOH A 53 257 107 HOH HOH . G 6 HOH A 54 258 111 HOH HOH . G 6 HOH A 55 259 112 HOH HOH . G 6 HOH A 56 260 113 HOH HOH . G 6 HOH A 57 261 115 HOH HOH . G 6 HOH A 58 262 116 HOH HOH . G 6 HOH A 59 263 118 HOH HOH . G 6 HOH A 60 264 122 HOH HOH . G 6 HOH A 61 265 123 HOH HOH . G 6 HOH A 62 266 126 HOH HOH . G 6 HOH A 63 267 128 HOH HOH . G 6 HOH A 64 268 129 HOH HOH . G 6 HOH A 65 269 130 HOH HOH . G 6 HOH A 66 270 132 HOH HOH . G 6 HOH A 67 271 134 HOH HOH . G 6 HOH A 68 272 135 HOH HOH . G 6 HOH A 69 273 136 HOH HOH . G 6 HOH A 70 274 138 HOH HOH . G 6 HOH A 71 275 139 HOH HOH . G 6 HOH A 72 276 140 HOH HOH . G 6 HOH A 73 277 142 HOH HOH . G 6 HOH A 74 278 145 HOH HOH . G 6 HOH A 75 279 152 HOH HOH . G 6 HOH A 76 280 153 HOH HOH . G 6 HOH A 77 281 157 HOH HOH . G 6 HOH A 78 282 158 HOH HOH . G 6 HOH A 79 283 160 HOH HOH . G 6 HOH A 80 284 161 HOH HOH . G 6 HOH A 81 285 163 HOH HOH . G 6 HOH A 82 286 164 HOH HOH . G 6 HOH A 83 287 171 HOH HOH . G 6 HOH A 84 288 173 HOH HOH . G 6 HOH A 85 289 174 HOH HOH . G 6 HOH A 86 290 175 HOH HOH . G 6 HOH A 87 291 176 HOH HOH . G 6 HOH A 88 292 179 HOH HOH . G 6 HOH A 89 293 180 HOH HOH . G 6 HOH A 90 294 181 HOH HOH . G 6 HOH A 91 295 185 HOH HOH . G 6 HOH A 92 296 186 HOH HOH . G 6 HOH A 93 297 187 HOH HOH . G 6 HOH A 94 298 189 HOH HOH . G 6 HOH A 95 299 190 HOH HOH . G 6 HOH A 96 300 194 HOH HOH . G 6 HOH A 97 301 200 HOH HOH . H 6 HOH B 1 204 3 HOH HOH . H 6 HOH B 2 205 4 HOH HOH . H 6 HOH B 3 206 5 HOH HOH . H 6 HOH B 4 207 6 HOH HOH . H 6 HOH B 5 208 7 HOH HOH . H 6 HOH B 6 209 8 HOH HOH . H 6 HOH B 7 210 9 HOH HOH . H 6 HOH B 8 211 10 HOH HOH . H 6 HOH B 9 212 13 HOH HOH . H 6 HOH B 10 213 14 HOH HOH . H 6 HOH B 11 214 15 HOH HOH . H 6 HOH B 12 215 17 HOH HOH . H 6 HOH B 13 216 20 HOH HOH . H 6 HOH B 14 217 22 HOH HOH . H 6 HOH B 15 218 23 HOH HOH . H 6 HOH B 16 219 27 HOH HOH . H 6 HOH B 17 220 29 HOH HOH . H 6 HOH B 18 221 30 HOH HOH . H 6 HOH B 19 222 32 HOH HOH . H 6 HOH B 20 223 33 HOH HOH . H 6 HOH B 21 224 35 HOH HOH . H 6 HOH B 22 225 37 HOH HOH . H 6 HOH B 23 226 38 HOH HOH . H 6 HOH B 24 227 39 HOH HOH . H 6 HOH B 25 228 48 HOH HOH . H 6 HOH B 26 229 50 HOH HOH . H 6 HOH B 27 230 51 HOH HOH . H 6 HOH B 28 231 52 HOH HOH . H 6 HOH B 29 232 53 HOH HOH . H 6 HOH B 30 233 54 HOH HOH . H 6 HOH B 31 234 56 HOH HOH . H 6 HOH B 32 235 57 HOH HOH . H 6 HOH B 33 236 62 HOH HOH . H 6 HOH B 34 237 63 HOH HOH . H 6 HOH B 35 238 65 HOH HOH . H 6 HOH B 36 239 71 HOH HOH . H 6 HOH B 37 240 72 HOH HOH . H 6 HOH B 38 241 78 HOH HOH . H 6 HOH B 39 242 83 HOH HOH . H 6 HOH B 40 243 86 HOH HOH . H 6 HOH B 41 244 88 HOH HOH . H 6 HOH B 42 245 89 HOH HOH . H 6 HOH B 43 246 90 HOH HOH . H 6 HOH B 44 247 91 HOH HOH . H 6 HOH B 45 248 92 HOH HOH . H 6 HOH B 46 249 93 HOH HOH . H 6 HOH B 47 250 94 HOH HOH . H 6 HOH B 48 251 97 HOH HOH . H 6 HOH B 49 252 98 HOH HOH . H 6 HOH B 50 253 99 HOH HOH . H 6 HOH B 51 254 102 HOH HOH . H 6 HOH B 52 255 103 HOH HOH . H 6 HOH B 53 256 104 HOH HOH . H 6 HOH B 54 257 105 HOH HOH . H 6 HOH B 55 258 108 HOH HOH . H 6 HOH B 56 259 109 HOH HOH . H 6 HOH B 57 260 110 HOH HOH . H 6 HOH B 58 261 114 HOH HOH . H 6 HOH B 59 262 117 HOH HOH . H 6 HOH B 60 263 119 HOH HOH . H 6 HOH B 61 264 120 HOH HOH . H 6 HOH B 62 265 121 HOH HOH . H 6 HOH B 63 266 124 HOH HOH . H 6 HOH B 64 267 125 HOH HOH . H 6 HOH B 65 268 127 HOH HOH . H 6 HOH B 66 269 131 HOH HOH . H 6 HOH B 67 270 133 HOH HOH . H 6 HOH B 68 271 137 HOH HOH . H 6 HOH B 69 272 141 HOH HOH . H 6 HOH B 70 273 143 HOH HOH . H 6 HOH B 71 274 144 HOH HOH . H 6 HOH B 72 275 146 HOH HOH . H 6 HOH B 73 276 147 HOH HOH . H 6 HOH B 74 277 148 HOH HOH . H 6 HOH B 75 278 149 HOH HOH . H 6 HOH B 76 279 150 HOH HOH . H 6 HOH B 77 280 151 HOH HOH . H 6 HOH B 78 281 154 HOH HOH . H 6 HOH B 79 282 155 HOH HOH . H 6 HOH B 80 283 156 HOH HOH . H 6 HOH B 81 284 159 HOH HOH . H 6 HOH B 82 285 162 HOH HOH . H 6 HOH B 83 286 165 HOH HOH . H 6 HOH B 84 287 166 HOH HOH . H 6 HOH B 85 288 167 HOH HOH . H 6 HOH B 86 289 168 HOH HOH . H 6 HOH B 87 290 169 HOH HOH . H 6 HOH B 88 291 170 HOH HOH . H 6 HOH B 89 292 172 HOH HOH . H 6 HOH B 90 293 177 HOH HOH . H 6 HOH B 91 294 178 HOH HOH . H 6 HOH B 92 295 182 HOH HOH . H 6 HOH B 93 296 183 HOH HOH . H 6 HOH B 94 297 184 HOH HOH . H 6 HOH B 95 298 188 HOH HOH . H 6 HOH B 96 299 191 HOH HOH . H 6 HOH B 97 300 192 HOH HOH . H 6 HOH B 98 301 193 HOH HOH . H 6 HOH B 99 302 195 HOH HOH . H 6 HOH B 100 303 196 HOH HOH . H 6 HOH B 101 304 197 HOH HOH . H 6 HOH B 102 305 198 HOH HOH . H 6 HOH B 103 306 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 23.184 17.911 19.261 1 51.32 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . D 3 24.593 17.854 19.213 1 50.01 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . D 3 22.758 17.316 20.58 1 50.8 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . D 3 23.906 16.793 21.199 1 50.03 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . D 3 21.883 16.142 20.248 1 54.02 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . D 3 22.286 15.052 21.042 1 55.54 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #