data_2QM3 # _model_server_result.job_id LRP8cINDiD9gwWujCNEX5Q _model_server_result.datetime_utc '2024-11-05 01:17:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 2QM3 # _exptl.entry_id 2QM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QM3 _cell.length_a 82.382 _cell.length_b 85.262 _cell.length_c 53.963 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 82.382 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 24 A ALA 0 1_555 A N MSE 25 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 25 A MSE 1 1_555 A N LYS 26 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C LEU 164 A LEU 140 1_555 A N MSE 165 A MSE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 165 A MSE 141 1_555 A N HIS 166 A HIS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C LEU 189 A LEU 165 1_555 A N MSE 190 A MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale6 A C MSE 190 A MSE 166 1_555 A N LEU 191 A LEU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C TYR 342 A TYR 318 1_555 A N MSE 343 A MSE 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 A C MSE 343 A MSE 319 1_555 A N PHE 344 A PHE 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A O ALA 151 A ALA 127 1_555 B CA CA . A CA 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 A OD1 ASP 182 A ASP 158 1_555 B CA CA . A CA 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc3 A OD2 ASP 182 A ASP 158 1_555 B CA CA . A CA 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc4 B CA CA . A CA 350 1_555 G O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc5 B CA CA . A CA 350 1_555 G O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc6 B CA CA . A CA 350 1_555 G O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc7 B CA CA . A CA 350 1_555 G O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc8 C CA CA . A CA 351 1_555 G O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc9 C CA CA . A CA 351 1_555 G O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc10 C CA CA . A CA 351 1_555 G O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc11 C CA CA . A CA 351 1_555 G O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 2QM3 _atom_sites.fract_transf_matrix[1][1] 0.012139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 350 350 CA CA . C 2 CA A 1 351 351 CA CA . D 3 ACY A 1 401 401 ACY ACY . E 3 ACY A 1 402 402 ACY ACY . F 3 ACY A 1 403 403 ACY ACY . G 4 HOH A 1 404 1 HOH HOH . G 4 HOH A 2 405 2 HOH HOH . G 4 HOH A 3 406 3 HOH HOH . G 4 HOH A 4 407 4 HOH HOH . G 4 HOH A 5 408 6 HOH HOH . G 4 HOH A 6 409 8 HOH HOH . G 4 HOH A 7 410 9 HOH HOH . G 4 HOH A 8 411 11 HOH HOH . G 4 HOH A 9 412 12 HOH HOH . G 4 HOH A 10 413 13 HOH HOH . G 4 HOH A 11 414 14 HOH HOH . G 4 HOH A 12 415 15 HOH HOH . G 4 HOH A 13 416 16 HOH HOH . G 4 HOH A 14 417 17 HOH HOH . G 4 HOH A 15 418 18 HOH HOH . G 4 HOH A 16 419 19 HOH HOH . G 4 HOH A 17 420 20 HOH HOH . G 4 HOH A 18 421 21 HOH HOH . G 4 HOH A 19 422 23 HOH HOH . G 4 HOH A 20 423 24 HOH HOH . G 4 HOH A 21 424 25 HOH HOH . G 4 HOH A 22 425 26 HOH HOH . G 4 HOH A 23 426 27 HOH HOH . G 4 HOH A 24 427 29 HOH HOH . G 4 HOH A 25 428 31 HOH HOH . G 4 HOH A 26 429 33 HOH HOH . G 4 HOH A 27 430 34 HOH HOH . G 4 HOH A 28 431 35 HOH HOH . G 4 HOH A 29 432 37 HOH HOH . G 4 HOH A 30 433 38 HOH HOH . G 4 HOH A 31 434 39 HOH HOH . G 4 HOH A 32 435 40 HOH HOH . G 4 HOH A 33 436 41 HOH HOH . G 4 HOH A 34 437 42 HOH HOH . G 4 HOH A 35 438 43 HOH HOH . G 4 HOH A 36 439 45 HOH HOH . G 4 HOH A 37 440 46 HOH HOH . G 4 HOH A 38 441 47 HOH HOH . G 4 HOH A 39 442 48 HOH HOH . G 4 HOH A 40 443 50 HOH HOH . G 4 HOH A 41 444 51 HOH HOH . G 4 HOH A 42 445 52 HOH HOH . G 4 HOH A 43 446 53 HOH HOH . G 4 HOH A 44 447 54 HOH HOH . G 4 HOH A 45 448 55 HOH HOH . G 4 HOH A 46 449 57 HOH HOH . G 4 HOH A 47 450 58 HOH HOH . G 4 HOH A 48 451 59 HOH HOH . G 4 HOH A 49 452 60 HOH HOH . G 4 HOH A 50 453 61 HOH HOH . G 4 HOH A 51 454 62 HOH HOH . G 4 HOH A 52 455 64 HOH HOH . G 4 HOH A 53 456 65 HOH HOH . G 4 HOH A 54 457 66 HOH HOH . G 4 HOH A 55 458 67 HOH HOH . G 4 HOH A 56 459 68 HOH HOH . G 4 HOH A 57 460 69 HOH HOH . G 4 HOH A 58 461 70 HOH HOH . G 4 HOH A 59 462 71 HOH HOH . G 4 HOH A 60 463 73 HOH HOH . G 4 HOH A 61 464 75 HOH HOH . G 4 HOH A 62 465 76 HOH HOH . G 4 HOH A 63 466 77 HOH HOH . G 4 HOH A 64 467 78 HOH HOH . G 4 HOH A 65 468 79 HOH HOH . G 4 HOH A 66 469 81 HOH HOH . G 4 HOH A 67 470 82 HOH HOH . G 4 HOH A 68 471 83 HOH HOH . G 4 HOH A 69 472 84 HOH HOH . G 4 HOH A 70 473 86 HOH HOH . G 4 HOH A 71 474 87 HOH HOH . G 4 HOH A 72 475 88 HOH HOH . G 4 HOH A 73 476 90 HOH HOH . G 4 HOH A 74 477 91 HOH HOH . G 4 HOH A 75 478 92 HOH HOH . G 4 HOH A 76 479 93 HOH HOH . G 4 HOH A 77 480 94 HOH HOH . G 4 HOH A 78 481 96 HOH HOH . G 4 HOH A 79 482 97 HOH HOH . G 4 HOH A 80 483 98 HOH HOH . G 4 HOH A 81 484 99 HOH HOH . G 4 HOH A 82 485 100 HOH HOH . G 4 HOH A 83 486 101 HOH HOH . G 4 HOH A 84 487 103 HOH HOH . G 4 HOH A 85 488 104 HOH HOH . G 4 HOH A 86 489 105 HOH HOH . G 4 HOH A 87 490 106 HOH HOH . G 4 HOH A 88 491 107 HOH HOH . G 4 HOH A 89 492 109 HOH HOH . G 4 HOH A 90 493 110 HOH HOH . G 4 HOH A 91 494 111 HOH HOH . G 4 HOH A 92 495 112 HOH HOH . G 4 HOH A 93 496 113 HOH HOH . G 4 HOH A 94 497 114 HOH HOH . G 4 HOH A 95 498 115 HOH HOH . G 4 HOH A 96 499 122 HOH HOH . G 4 HOH A 97 500 123 HOH HOH . G 4 HOH A 98 501 124 HOH HOH . G 4 HOH A 99 502 125 HOH HOH . G 4 HOH A 100 503 126 HOH HOH . G 4 HOH A 101 504 127 HOH HOH . G 4 HOH A 102 505 129 HOH HOH . G 4 HOH A 103 506 130 HOH HOH . G 4 HOH A 104 507 131 HOH HOH . G 4 HOH A 105 508 132 HOH HOH . G 4 HOH A 106 509 133 HOH HOH . G 4 HOH A 107 510 134 HOH HOH . G 4 HOH A 108 511 135 HOH HOH . G 4 HOH A 109 512 136 HOH HOH . G 4 HOH A 110 513 137 HOH HOH . G 4 HOH A 111 514 140 HOH HOH . G 4 HOH A 112 515 141 HOH HOH . G 4 HOH A 113 516 144 HOH HOH . G 4 HOH A 114 517 145 HOH HOH . G 4 HOH A 115 518 146 HOH HOH . G 4 HOH A 116 519 147 HOH HOH . G 4 HOH A 117 520 148 HOH HOH . G 4 HOH A 118 521 150 HOH HOH . G 4 HOH A 119 522 151 HOH HOH . G 4 HOH A 120 523 153 HOH HOH . G 4 HOH A 121 524 154 HOH HOH . G 4 HOH A 122 525 156 HOH HOH . G 4 HOH A 123 526 158 HOH HOH . G 4 HOH A 124 527 160 HOH HOH . G 4 HOH A 125 528 161 HOH HOH . G 4 HOH A 126 529 162 HOH HOH . G 4 HOH A 127 530 163 HOH HOH . G 4 HOH A 128 531 164 HOH HOH . G 4 HOH A 129 532 165 HOH HOH . G 4 HOH A 130 533 166 HOH HOH . G 4 HOH A 131 534 168 HOH HOH . G 4 HOH A 132 535 169 HOH HOH . G 4 HOH A 133 536 170 HOH HOH . G 4 HOH A 134 537 171 HOH HOH . G 4 HOH A 135 538 172 HOH HOH . G 4 HOH A 136 539 173 HOH HOH . G 4 HOH A 137 540 174 HOH HOH . G 4 HOH A 138 541 175 HOH HOH . G 4 HOH A 139 542 176 HOH HOH . G 4 HOH A 140 543 177 HOH HOH . G 4 HOH A 141 544 178 HOH HOH . G 4 HOH A 142 545 179 HOH HOH . G 4 HOH A 143 546 180 HOH HOH . G 4 HOH A 144 547 181 HOH HOH . G 4 HOH A 145 548 182 HOH HOH . G 4 HOH A 146 549 183 HOH HOH . G 4 HOH A 147 550 185 HOH HOH . G 4 HOH A 148 551 186 HOH HOH . G 4 HOH A 149 552 187 HOH HOH . G 4 HOH A 150 553 188 HOH HOH . G 4 HOH A 151 554 189 HOH HOH . G 4 HOH A 152 555 190 HOH HOH . G 4 HOH A 153 556 191 HOH HOH . G 4 HOH A 154 557 192 HOH HOH . G 4 HOH A 155 558 193 HOH HOH . G 4 HOH A 156 559 194 HOH HOH . G 4 HOH A 157 560 196 HOH HOH . G 4 HOH A 158 561 197 HOH HOH . G 4 HOH A 159 562 198 HOH HOH . G 4 HOH A 160 563 199 HOH HOH . G 4 HOH A 161 564 200 HOH HOH . G 4 HOH A 162 565 201 HOH HOH . G 4 HOH A 163 566 202 HOH HOH . G 4 HOH A 164 567 203 HOH HOH . G 4 HOH A 165 568 204 HOH HOH . G 4 HOH A 166 569 205 HOH HOH . G 4 HOH A 167 570 206 HOH HOH . G 4 HOH A 168 571 207 HOH HOH . G 4 HOH A 169 572 208 HOH HOH . G 4 HOH A 170 573 209 HOH HOH . G 4 HOH A 171 574 210 HOH HOH . G 4 HOH A 172 575 211 HOH HOH . G 4 HOH A 173 576 212 HOH HOH . G 4 HOH A 174 577 213 HOH HOH . G 4 HOH A 175 578 214 HOH HOH . G 4 HOH A 176 579 215 HOH HOH . G 4 HOH A 177 580 216 HOH HOH . G 4 HOH A 178 581 217 HOH HOH . G 4 HOH A 179 582 218 HOH HOH . G 4 HOH A 180 583 219 HOH HOH . G 4 HOH A 181 584 220 HOH HOH . G 4 HOH A 182 585 221 HOH HOH . G 4 HOH A 183 586 222 HOH HOH . G 4 HOH A 184 587 223 HOH HOH . G 4 HOH A 185 588 224 HOH HOH . G 4 HOH A 186 589 225 HOH HOH . G 4 HOH A 187 590 226 HOH HOH . G 4 HOH A 188 591 227 HOH HOH . G 4 HOH A 189 592 228 HOH HOH . G 4 HOH A 190 593 229 HOH HOH . G 4 HOH A 191 594 230 HOH HOH . G 4 HOH A 192 595 231 HOH HOH . G 4 HOH A 193 596 232 HOH HOH . G 4 HOH A 194 597 233 HOH HOH . G 4 HOH A 195 598 234 HOH HOH . G 4 HOH A 196 599 235 HOH HOH . G 4 HOH A 197 600 237 HOH HOH . G 4 HOH A 198 601 238 HOH HOH . G 4 HOH A 199 602 239 HOH HOH . G 4 HOH A 200 603 240 HOH HOH . G 4 HOH A 201 604 241 HOH HOH . G 4 HOH A 202 605 242 HOH HOH . G 4 HOH A 203 606 243 HOH HOH . G 4 HOH A 204 607 244 HOH HOH . G 4 HOH A 205 608 245 HOH HOH . G 4 HOH A 206 609 246 HOH HOH . G 4 HOH A 207 610 247 HOH HOH . G 4 HOH A 208 611 248 HOH HOH . G 4 HOH A 209 612 249 HOH HOH . G 4 HOH A 210 613 250 HOH HOH . G 4 HOH A 211 614 251 HOH HOH . G 4 HOH A 212 615 252 HOH HOH . G 4 HOH A 213 616 253 HOH HOH . G 4 HOH A 214 617 254 HOH HOH . G 4 HOH A 215 618 255 HOH HOH . G 4 HOH A 216 619 256 HOH HOH . G 4 HOH A 217 620 257 HOH HOH . G 4 HOH A 218 621 258 HOH HOH . G 4 HOH A 219 622 259 HOH HOH . G 4 HOH A 220 623 260 HOH HOH . G 4 HOH A 221 624 261 HOH HOH . G 4 HOH A 222 625 262 HOH HOH . G 4 HOH A 223 626 263 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . D 3 57.228 17.41 35.876 1 45.7 ? C ACY 401 A 1 HETATM 2 O O ACY . . . D 3 58.352 17.004 35.516 1 45.06 ? O ACY 401 A 1 HETATM 3 O OXT ACY . . . D 3 56.864 18.615 35.815 1 46.02 ? OXT ACY 401 A 1 HETATM 4 C CH3 ACY . . . D 3 56.246 16.405 36.418 1 45.67 ? CH3 ACY 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #