data_2QM9 # _model_server_result.job_id ZVGrkVTFV8lvvjU6w_ztiA _model_server_result.datetime_utc '2024-11-23 23:53:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 2QM9 # _exptl.entry_id 2QM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-5-(4-{[(2R)-6-HYDROXY-2,5,7,8-TETRAMETHYL-3,4-DIHYDRO-2H-CHROMEN-2-YL]METHOXY}BENZYL)-1,3-THIAZOLIDINE-2,4-DIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QM9 _cell.length_a 49.886 _cell.length_b 81.414 _cell.length_c 94.127 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C24 H27 N O5 S' _chem_comp.formula_weight 441.54 _chem_comp.id TDZ _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-5-(4-{[(2R)-6-HYDROXY-2,5,7,8-TETRAMETHYL-3,4-DIHYDRO-2H-CHROMEN-2-YL]METHOXY}BENZYL)-1,3-THIAZOLIDINE-2,4-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TROGLITAZONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAM CAL TDZ sing 294 n n CAM CBE TDZ sing 295 n n CAM HAM1 TDZ sing 296 n n CAM HAM2 TDZ sing 297 n n CAL CBB TDZ sing 298 n n CAL HAL1 TDZ sing 299 n n CAL HAL2 TDZ sing 300 n n CBB CAZ TDZ doub 301 n y CBB CBC TDZ sing 302 n y CAZ CAC TDZ sing 303 n n CAZ CBA TDZ sing 304 n y CAC HAC1 TDZ sing 305 n n CAC HAC2 TDZ sing 306 n n CAC HAC3 TDZ sing 307 n n CBA OAG TDZ sing 308 n n CBA CAX TDZ doub 309 n y OAG HOAG TDZ sing 310 n n CAX CAY TDZ sing 311 n y CAX CAA TDZ sing 312 n n CAA HAA1 TDZ sing 313 n n CAA HAA2 TDZ sing 314 n n CAA HAA3 TDZ sing 315 n n CAY CBC TDZ doub 316 n y CAY CAB TDZ sing 317 n n CAB HAB1 TDZ sing 318 n n CAB HAB2 TDZ sing 319 n n CAB HAB3 TDZ sing 320 n n CBC OAR TDZ sing 321 n n OAR CBE TDZ sing 322 n n CBE CAN TDZ sing 323 n n CBE CAD TDZ sing 324 n n CAD HAD1 TDZ sing 325 n n CAD HAD2 TDZ sing 326 n n CAD HAD3 TDZ sing 327 n n CAN OAQ TDZ sing 328 n n CAN HAN1 TDZ sing 329 n n CAN HAN2 TDZ sing 330 n n OAQ CAW TDZ sing 331 n n CAW CAK TDZ doub 332 n y CAW CAJ TDZ sing 333 n y CAK CAI TDZ sing 334 n y CAK HAK TDZ sing 335 n n CAI CAV TDZ doub 336 n y CAI HAI TDZ sing 337 n n CAJ CAH TDZ doub 338 n y CAJ HAJ TDZ sing 339 n n CAH CAV TDZ sing 340 n y CAH HAH TDZ sing 341 n n CAV CAO TDZ sing 342 n n CAO CBD TDZ sing 343 n n CAO HAO1 TDZ sing 344 n n CAO HAO2 TDZ sing 345 n n CBD SAS TDZ sing 346 n n CBD CAU TDZ sing 347 n n CBD HBD TDZ sing 348 n n SAS CAT TDZ sing 349 n n CAT OAE TDZ doub 350 n n CAT NAP TDZ sing 351 n n NAP CAU TDZ sing 352 n n NAP HNAP TDZ sing 353 n n CAU OAF TDZ doub 354 n n # _atom_sites.entry_id 2QM9 _atom_sites.fract_transf_matrix[1][1] 0.020046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 303 303 SO4 SO4 . D 2 SO4 A 1 301 301 SO4 SO4 . E 3 TDZ A 1 201 201 TDZ TDZ . F 2 SO4 B 1 302 302 SO4 SO4 . G 3 TDZ B 1 202 202 TDZ TDZ . H 4 HOH A 1 304 3 HOH HOH . H 4 HOH A 2 305 4 HOH HOH . H 4 HOH A 3 306 5 HOH HOH . H 4 HOH A 4 307 7 HOH HOH . H 4 HOH A 5 308 9 HOH HOH . H 4 HOH A 6 309 10 HOH HOH . H 4 HOH A 7 310 12 HOH HOH . H 4 HOH A 8 311 13 HOH HOH . H 4 HOH A 9 312 14 HOH HOH . H 4 HOH A 10 313 15 HOH HOH . H 4 HOH A 11 314 16 HOH HOH . H 4 HOH A 12 315 18 HOH HOH . H 4 HOH A 13 316 20 HOH HOH . H 4 HOH A 14 317 21 HOH HOH . H 4 HOH A 15 318 22 HOH HOH . H 4 HOH A 16 319 24 HOH HOH . H 4 HOH A 17 320 25 HOH HOH . H 4 HOH A 18 321 27 HOH HOH . H 4 HOH A 19 322 28 HOH HOH . H 4 HOH A 20 323 30 HOH HOH . H 4 HOH A 21 324 34 HOH HOH . H 4 HOH A 22 325 37 HOH HOH . H 4 HOH A 23 326 38 HOH HOH . H 4 HOH A 24 327 40 HOH HOH . H 4 HOH A 25 328 41 HOH HOH . H 4 HOH A 26 329 42 HOH HOH . H 4 HOH A 27 330 43 HOH HOH . H 4 HOH A 28 331 44 HOH HOH . H 4 HOH A 29 332 45 HOH HOH . H 4 HOH A 30 333 48 HOH HOH . H 4 HOH A 31 334 49 HOH HOH . H 4 HOH A 32 335 50 HOH HOH . H 4 HOH A 33 336 51 HOH HOH . H 4 HOH A 34 337 52 HOH HOH . H 4 HOH A 35 338 53 HOH HOH . H 4 HOH A 36 339 56 HOH HOH . H 4 HOH A 37 340 58 HOH HOH . H 4 HOH A 38 341 60 HOH HOH . H 4 HOH A 39 342 63 HOH HOH . H 4 HOH A 40 343 64 HOH HOH . H 4 HOH A 41 344 65 HOH HOH . H 4 HOH A 42 345 69 HOH HOH . H 4 HOH A 43 346 70 HOH HOH . H 4 HOH A 44 347 73 HOH HOH . H 4 HOH A 45 348 74 HOH HOH . H 4 HOH A 46 349 75 HOH HOH . H 4 HOH A 47 350 76 HOH HOH . H 4 HOH A 48 351 78 HOH HOH . H 4 HOH A 49 352 81 HOH HOH . H 4 HOH A 50 353 82 HOH HOH . H 4 HOH A 51 354 83 HOH HOH . H 4 HOH A 52 355 84 HOH HOH . H 4 HOH A 53 356 86 HOH HOH . H 4 HOH A 54 357 87 HOH HOH . H 4 HOH A 55 358 88 HOH HOH . H 4 HOH A 56 359 89 HOH HOH . H 4 HOH A 57 360 91 HOH HOH . H 4 HOH A 58 361 93 HOH HOH . H 4 HOH A 59 362 94 HOH HOH . H 4 HOH A 60 363 95 HOH HOH . H 4 HOH A 61 364 96 HOH HOH . H 4 HOH A 62 365 97 HOH HOH . H 4 HOH A 63 366 104 HOH HOH . I 4 HOH B 1 303 1 HOH HOH . I 4 HOH B 2 304 2 HOH HOH . I 4 HOH B 3 305 6 HOH HOH . I 4 HOH B 4 306 8 HOH HOH . I 4 HOH B 5 307 11 HOH HOH . I 4 HOH B 6 308 17 HOH HOH . I 4 HOH B 7 309 19 HOH HOH . I 4 HOH B 8 310 23 HOH HOH . I 4 HOH B 9 311 26 HOH HOH . I 4 HOH B 10 312 29 HOH HOH . I 4 HOH B 11 313 31 HOH HOH . I 4 HOH B 12 314 32 HOH HOH . I 4 HOH B 13 315 33 HOH HOH . I 4 HOH B 14 316 35 HOH HOH . I 4 HOH B 15 317 36 HOH HOH . I 4 HOH B 16 318 39 HOH HOH . I 4 HOH B 17 319 46 HOH HOH . I 4 HOH B 18 320 47 HOH HOH . I 4 HOH B 19 321 54 HOH HOH . I 4 HOH B 20 322 55 HOH HOH . I 4 HOH B 21 323 57 HOH HOH . I 4 HOH B 22 324 59 HOH HOH . I 4 HOH B 23 325 61 HOH HOH . I 4 HOH B 24 326 62 HOH HOH . I 4 HOH B 25 327 66 HOH HOH . I 4 HOH B 26 328 67 HOH HOH . I 4 HOH B 27 329 68 HOH HOH . I 4 HOH B 28 330 71 HOH HOH . I 4 HOH B 29 331 72 HOH HOH . I 4 HOH B 30 332 77 HOH HOH . I 4 HOH B 31 333 79 HOH HOH . I 4 HOH B 32 334 80 HOH HOH . I 4 HOH B 33 335 85 HOH HOH . I 4 HOH B 34 336 90 HOH HOH . I 4 HOH B 35 337 92 HOH HOH . I 4 HOH B 36 338 98 HOH HOH . I 4 HOH B 37 339 99 HOH HOH . I 4 HOH B 38 340 100 HOH HOH . I 4 HOH B 39 341 101 HOH HOH . I 4 HOH B 40 342 102 HOH HOH . I 4 HOH B 41 343 103 HOH HOH . I 4 HOH B 42 344 105 HOH HOH . I 4 HOH B 43 345 106 HOH HOH . I 4 HOH B 44 346 107 HOH HOH . I 4 HOH B 45 347 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAM TDZ . . . G 3 -19.382 -33.928 14.19 1 95.19 ? CAM TDZ 202 B 1 HETATM 2 C CAL TDZ . . . G 3 -18.576 -35.145 13.704 1 94.5 ? CAL TDZ 202 B 1 HETATM 3 C CBB TDZ . . . G 3 -17.628 -35.671 14.793 1 94.43 ? CBB TDZ 202 B 1 HETATM 4 C CAZ TDZ . . . G 3 -16.78 -36.754 14.552 1 94.36 ? CAZ TDZ 202 B 1 HETATM 5 C CAC TDZ . . . G 3 -16.807 -37.42 13.175 1 94.82 ? CAC TDZ 202 B 1 HETATM 6 C CBA TDZ . . . G 3 -15.914 -37.24 15.535 1 93.84 ? CBA TDZ 202 B 1 HETATM 7 O OAG TDZ . . . G 3 -15.097 -38.298 15.283 1 94.08 ? OAG TDZ 202 B 1 HETATM 8 C CAX TDZ . . . G 3 -15.878 -36.649 16.785 1 93.4 ? CAX TDZ 202 B 1 HETATM 9 C CAA TDZ . . . G 3 -14.927 -37.185 17.865 1 92.57 ? CAA TDZ 202 B 1 HETATM 10 C CAY TDZ . . . G 3 -16.716 -35.575 17.042 1 93.68 ? CAY TDZ 202 B 1 HETATM 11 C CAB TDZ . . . G 3 -16.665 -34.951 18.418 1 93.13 ? CAB TDZ 202 B 1 HETATM 12 C CBC TDZ . . . G 3 -17.592 -35.08 16.065 1 94.5 ? CBC TDZ 202 B 1 HETATM 13 O OAR TDZ . . . G 3 -18.427 -34.014 16.356 1 94.75 ? OAR TDZ 202 B 1 HETATM 14 C CBE TDZ . . . G 3 -19.72 -34.063 15.671 1 95.23 ? CBE TDZ 202 B 1 HETATM 15 C CAD TDZ . . . G 3 -20.477 -35.38 15.924 1 94.62 ? CAD TDZ 202 B 1 HETATM 16 C CAN TDZ . . . G 3 -20.648 -32.874 16.09 1 96.5 ? CAN TDZ 202 B 1 HETATM 17 O OAQ TDZ . . . G 3 -21.369 -32.929 17.39 0 98.74 ? OAQ TDZ 202 B 1 HETATM 18 C CAW TDZ . . . G 3 -20.414 -32.963 18.363 0 100.45 ? CAW TDZ 202 B 1 HETATM 19 C CAK TDZ . . . G 3 -19.578 -31.865 18.568 0 100.89 ? CAK TDZ 202 B 1 HETATM 20 C CAI TDZ . . . G 3 -18.595 -31.933 19.552 0 101.71 ? CAI TDZ 202 B 1 HETATM 21 C CAJ TDZ . . . G 3 -20.242 -34.114 19.13 0 100.87 ? CAJ TDZ 202 B 1 HETATM 22 C CAH TDZ . . . G 3 -19.247 -34.177 20.104 0 101.8 ? CAH TDZ 202 B 1 HETATM 23 C CAV TDZ . . . G 3 -18.412 -33.085 20.325 0 102.74 ? CAV TDZ 202 B 1 HETATM 24 C CAO TDZ . . . G 3 -17.317 -33.183 21.429 0 104.5 ? CAO TDZ 202 B 1 HETATM 25 C CBD TDZ . . . G 3 -15.925 -32.628 21.049 0 105.67 ? CBD TDZ 202 B 1 HETATM 26 S SAS TDZ . . . G 3 -15.608 -32.778 19.278 0 106.86 ? SAS TDZ 202 B 1 HETATM 27 C CAT TDZ . . . G 3 -15.538 -31.065 18.991 0 106.96 ? CAT TDZ 202 B 1 HETATM 28 O OAE TDZ . . . G 3 -15.353 -30.569 17.878 0 107.16 ? OAE TDZ 202 B 1 HETATM 29 N NAP TDZ . . . G 3 -15.712 -30.351 20.119 0 106.49 ? NAP TDZ 202 B 1 HETATM 30 C CAU TDZ . . . G 3 -15.905 -31.096 21.23 0 106.04 ? CAU TDZ 202 B 1 HETATM 31 O OAF TDZ . . . G 3 -16.08 -30.575 22.33 0 105.91 ? OAF TDZ 202 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #