data_2QMM # _model_server_result.job_id JkYuzKPFoqNT2SjaHYlaFg _model_server_result.datetime_utc '2024-11-26 01:36:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qmm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2QMM # _exptl.entry_id 2QMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QMM _cell.length_a 70.309 _cell.length_b 79.384 _cell.length_c 105.444 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 2QMM _atom_sites.fract_transf_matrix[1][1] 0.014223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 301 301 SAM SAM . D 2 SAM B 1 301 301 SAM SAM . E 3 HOH A 1 302 302 HOH HOH . E 3 HOH A 2 303 303 HOH HOH . E 3 HOH A 3 304 304 HOH HOH . E 3 HOH A 4 305 305 HOH HOH . E 3 HOH A 5 306 306 HOH HOH . E 3 HOH A 6 307 307 HOH HOH . E 3 HOH A 7 308 308 HOH HOH . E 3 HOH A 8 309 309 HOH HOH . E 3 HOH A 9 310 310 HOH HOH . E 3 HOH A 10 311 311 HOH HOH . E 3 HOH A 11 312 312 HOH HOH . E 3 HOH A 12 313 313 HOH HOH . E 3 HOH A 13 314 314 HOH HOH . E 3 HOH A 14 315 315 HOH HOH . E 3 HOH A 15 316 316 HOH HOH . E 3 HOH A 16 317 317 HOH HOH . E 3 HOH A 17 318 318 HOH HOH . E 3 HOH A 18 319 319 HOH HOH . E 3 HOH A 19 320 320 HOH HOH . E 3 HOH A 20 321 321 HOH HOH . E 3 HOH A 21 322 322 HOH HOH . E 3 HOH A 22 323 323 HOH HOH . E 3 HOH A 23 324 324 HOH HOH . E 3 HOH A 24 325 325 HOH HOH . E 3 HOH A 25 326 326 HOH HOH . E 3 HOH A 26 327 327 HOH HOH . E 3 HOH A 27 328 328 HOH HOH . E 3 HOH A 28 329 329 HOH HOH . E 3 HOH A 29 330 330 HOH HOH . E 3 HOH A 30 331 331 HOH HOH . E 3 HOH A 31 332 332 HOH HOH . E 3 HOH A 32 333 333 HOH HOH . E 3 HOH A 33 334 334 HOH HOH . E 3 HOH A 34 335 335 HOH HOH . E 3 HOH A 35 336 336 HOH HOH . E 3 HOH A 36 337 337 HOH HOH . E 3 HOH A 37 338 338 HOH HOH . E 3 HOH A 38 339 339 HOH HOH . E 3 HOH A 39 340 340 HOH HOH . E 3 HOH A 40 341 341 HOH HOH . E 3 HOH A 41 342 342 HOH HOH . E 3 HOH A 42 343 343 HOH HOH . E 3 HOH A 43 344 344 HOH HOH . E 3 HOH A 44 345 345 HOH HOH . E 3 HOH A 45 346 346 HOH HOH . E 3 HOH A 46 347 347 HOH HOH . E 3 HOH A 47 348 348 HOH HOH . E 3 HOH A 48 349 349 HOH HOH . E 3 HOH A 49 350 350 HOH HOH . E 3 HOH A 50 351 351 HOH HOH . E 3 HOH A 51 352 352 HOH HOH . E 3 HOH A 52 353 353 HOH HOH . E 3 HOH A 53 354 354 HOH HOH . E 3 HOH A 54 355 355 HOH HOH . E 3 HOH A 55 356 356 HOH HOH . E 3 HOH A 56 357 357 HOH HOH . E 3 HOH A 57 359 359 HOH HOH . E 3 HOH A 58 360 360 HOH HOH . E 3 HOH A 59 361 361 HOH HOH . F 3 HOH B 1 302 302 HOH HOH . F 3 HOH B 2 303 303 HOH HOH . F 3 HOH B 3 304 304 HOH HOH . F 3 HOH B 4 305 305 HOH HOH . F 3 HOH B 5 306 306 HOH HOH . F 3 HOH B 6 307 307 HOH HOH . F 3 HOH B 7 308 308 HOH HOH . F 3 HOH B 8 309 309 HOH HOH . F 3 HOH B 9 310 310 HOH HOH . F 3 HOH B 10 311 311 HOH HOH . F 3 HOH B 11 312 312 HOH HOH . F 3 HOH B 12 313 313 HOH HOH . F 3 HOH B 13 314 314 HOH HOH . F 3 HOH B 14 315 315 HOH HOH . F 3 HOH B 15 316 316 HOH HOH . F 3 HOH B 16 317 317 HOH HOH . F 3 HOH B 17 318 318 HOH HOH . F 3 HOH B 18 319 319 HOH HOH . F 3 HOH B 19 320 320 HOH HOH . F 3 HOH B 20 321 321 HOH HOH . F 3 HOH B 21 322 322 HOH HOH . F 3 HOH B 22 323 323 HOH HOH . F 3 HOH B 23 324 324 HOH HOH . F 3 HOH B 24 325 325 HOH HOH . F 3 HOH B 25 326 326 HOH HOH . F 3 HOH B 26 327 327 HOH HOH . F 3 HOH B 27 328 328 HOH HOH . F 3 HOH B 28 329 329 HOH HOH . F 3 HOH B 29 330 330 HOH HOH . F 3 HOH B 30 331 331 HOH HOH . F 3 HOH B 31 332 332 HOH HOH . F 3 HOH B 32 333 333 HOH HOH . F 3 HOH B 33 334 334 HOH HOH . F 3 HOH B 34 335 335 HOH HOH . F 3 HOH B 35 336 336 HOH HOH . F 3 HOH B 36 337 337 HOH HOH . F 3 HOH B 37 338 338 HOH HOH . F 3 HOH B 38 339 339 HOH HOH . F 3 HOH B 39 340 340 HOH HOH . F 3 HOH B 40 341 341 HOH HOH . F 3 HOH B 41 342 342 HOH HOH . F 3 HOH B 42 344 344 HOH HOH . F 3 HOH B 43 345 345 HOH HOH . F 3 HOH B 44 346 346 HOH HOH . F 3 HOH B 45 347 347 HOH HOH . F 3 HOH B 46 348 348 HOH HOH . F 3 HOH B 47 349 349 HOH HOH . F 3 HOH B 48 350 350 HOH HOH . F 3 HOH B 49 351 351 HOH HOH . F 3 HOH B 50 352 352 HOH HOH . F 3 HOH B 51 353 353 HOH HOH . F 3 HOH B 52 354 354 HOH HOH . F 3 HOH B 53 355 355 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S SD SAM . . . D 2 -3.757 29.323 0.764 1 26.65 ? SD SAM 301 B 1 HETATM 2 C C5' SAM . . . D 2 -2.548 28.56 0.973 1 27.03 ? C5' SAM 301 B 1 HETATM 3 C C4' SAM . . . D 2 -1.695 29.204 2.06 1 27.47 ? C4' SAM 301 B 1 HETATM 4 O O4' SAM . . . D 2 -1.058 30.387 1.548 1 29.1 ? O4' SAM 301 B 1 HETATM 5 C C3' SAM . . . D 2 -2.453 29.713 3.29 1 28.25 ? C3' SAM 301 B 1 HETATM 6 O O3' SAM . . . D 2 -2.722 28.707 4.267 1 28.82 ? O3' SAM 301 B 1 HETATM 7 C C2' SAM . . . D 2 -1.502 30.748 3.857 1 26.52 ? C2' SAM 301 B 1 HETATM 8 O O2' SAM . . . D 2 -0.492 30.09 4.672 1 23.95 ? O2' SAM 301 B 1 HETATM 9 C C1' SAM . . . D 2 -0.94 31.376 2.582 1 26.83 ? C1' SAM 301 B 1 HETATM 10 N N9 SAM . . . D 2 -1.673 32.611 2.124 1 26.96 ? N9 SAM 301 B 1 HETATM 11 C C8 SAM . . . D 2 -2.783 32.687 1.327 1 26.55 ? C8 SAM 301 B 1 HETATM 12 N N7 SAM . . . D 2 -3.147 33.985 1.051 1 24.82 ? N7 SAM 301 B 1 HETATM 13 C C5 SAM . . . D 2 -2.263 34.776 1.698 1 27.1 ? C5 SAM 301 B 1 HETATM 14 C C6 SAM . . . D 2 -2.055 36.24 1.854 1 27.33 ? C6 SAM 301 B 1 HETATM 15 N N6 SAM . . . D 2 -2.886 37.151 1.317 1 26.07 ? N6 SAM 301 B 1 HETATM 16 N N1 SAM . . . D 2 -0.994 36.625 2.579 1 25.44 ? N1 SAM 301 B 1 HETATM 17 C C2 SAM . . . D 2 -0.177 35.754 3.181 1 26.24 ? C2 SAM 301 B 1 HETATM 18 N N3 SAM . . . D 2 -0.292 34.421 3.091 1 27.6 ? N3 SAM 301 B 1 HETATM 19 C C4 SAM . . . D 2 -1.303 33.876 2.391 1 26.74 ? C4 SAM 301 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #