data_2QMX # _model_server_result.job_id MEuwDHtGGaVAc6WYciNp6A _model_server_result.datetime_utc '2025-04-04 03:12:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 2QMX # _exptl.entry_id 2QMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENYLALANINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QMX _cell.length_a 86.87 _cell.length_b 127.886 _cell.length_c 56.595 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 102 A ALA 99 1_555 A N MSE 103 A MSE 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 103 A MSE 100 1_555 A N SER 104 A SER 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LYS 135 A LYS 132 1_555 A N MSE 136 A MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C MSE 136 A MSE 133 1_555 A N VAL 137 A VAL 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C THR 270 A THR 267 1_555 A N MSE 271 A MSE 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale6 A C MSE 271 A MSE 268 1_555 A N VAL 272 A VAL 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 B C ALA 102 B ALA 99 1_555 B N MSE 103 B MSE 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 103 B MSE 100 1_555 B N SER 104 B SER 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale9 B C LYS 135 B LYS 132 1_555 B N MSE 136 B MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale10 B C MSE 136 B MSE 133 1_555 B N VAL 137 B VAL 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale11 B C THR 270 B THR 267 1_555 B N MSE 271 B MSE 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale12 B C MSE 271 B MSE 268 1_555 B N VAL 272 B VAL 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id PHE _chem_comp.mon_nstd_flag y _chem_comp.name PHENYLALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PHE sing 252 n n N H PHE sing 253 n n N H2 PHE sing 254 n n CA C PHE sing 255 n n CA CB PHE sing 256 n n CA HA PHE sing 257 n n C O PHE doub 258 n n C OXT PHE sing 259 n n CB CG PHE sing 260 n n CB HB2 PHE sing 261 n n CB HB3 PHE sing 262 n n CG CD1 PHE doub 263 n y CG CD2 PHE sing 264 n y CD1 CE1 PHE sing 265 n y CD1 HD1 PHE sing 266 n n CD2 CE2 PHE doub 267 n y CD2 HD2 PHE sing 268 n n CE1 CZ PHE doub 269 n y CE1 HE1 PHE sing 270 n n CE2 CZ PHE sing 271 n y CE2 HE2 PHE sing 272 n n CZ HZ PHE sing 273 n n OXT HXT PHE sing 274 n n # _atom_sites.entry_id 2QMX _atom_sites.fract_transf_matrix[1][1] 0.011511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 301 1 ACT ACT . D 2 ACT A 1 302 2 ACT ACT . E 3 PHE A 1 303 1 PHE PHE . F 3 PHE A 1 304 2 PHE PHE . G 4 EDO A 1 305 2 EDO EDO . H 4 EDO A 1 306 4 EDO EDO . I 4 EDO A 1 307 6 EDO EDO . J 4 EDO A 1 308 7 EDO EDO . K 4 EDO A 1 309 8 EDO EDO . L 4 EDO A 1 310 9 EDO EDO . M 4 EDO A 1 311 10 EDO EDO . N 4 EDO A 1 312 11 EDO EDO . O 4 EDO B 1 281 1 EDO EDO . P 4 EDO B 1 282 3 EDO EDO . Q 4 EDO B 1 283 5 EDO EDO . R 5 HOH A 1 313 1 HOH HOH . R 5 HOH A 2 314 2 HOH HOH . R 5 HOH A 3 315 3 HOH HOH . R 5 HOH A 4 316 4 HOH HOH . R 5 HOH A 5 317 7 HOH HOH . R 5 HOH A 6 318 9 HOH HOH . R 5 HOH A 7 319 10 HOH HOH . R 5 HOH A 8 320 14 HOH HOH . R 5 HOH A 9 321 15 HOH HOH . R 5 HOH A 10 322 17 HOH HOH . R 5 HOH A 11 323 18 HOH HOH . R 5 HOH A 12 324 19 HOH HOH . R 5 HOH A 13 325 20 HOH HOH . R 5 HOH A 14 326 21 HOH HOH . R 5 HOH A 15 327 23 HOH HOH . R 5 HOH A 16 328 24 HOH HOH . R 5 HOH A 17 329 25 HOH HOH . R 5 HOH A 18 330 28 HOH HOH . R 5 HOH A 19 331 29 HOH HOH . R 5 HOH A 20 332 33 HOH HOH . R 5 HOH A 21 333 34 HOH HOH . R 5 HOH A 22 334 35 HOH HOH . R 5 HOH A 23 335 36 HOH HOH . R 5 HOH A 24 336 38 HOH HOH . S 5 HOH B 1 284 5 HOH HOH . S 5 HOH B 2 285 6 HOH HOH . S 5 HOH B 3 286 8 HOH HOH . S 5 HOH B 4 287 11 HOH HOH . S 5 HOH B 5 288 16 HOH HOH . S 5 HOH B 6 289 22 HOH HOH . S 5 HOH B 7 290 26 HOH HOH . S 5 HOH B 8 291 27 HOH HOH . S 5 HOH B 9 292 30 HOH HOH . S 5 HOH B 10 293 31 HOH HOH . S 5 HOH B 11 294 32 HOH HOH . S 5 HOH B 12 295 37 HOH HOH . S 5 HOH B 13 296 39 HOH HOH . S 5 HOH B 14 297 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PHE . . . E 3 3.37 11.745 24.644 1 47.78 ? N PHE 303 A 1 HETATM 2 C CA PHE . . . E 3 2.194 11.17 23.937 1 48.66 ? CA PHE 303 A 1 HETATM 3 C C PHE . . . E 3 2.681 10.109 22.95 1 49.5 ? C PHE 303 A 1 HETATM 4 O O PHE . . . E 3 3.851 9.748 23.152 1 51.42 ? O PHE 303 A 1 HETATM 5 C CB PHE . . . E 3 1.379 12.283 23.279 1 47.92 ? CB PHE 303 A 1 HETATM 6 C CG PHE . . . E 3 2.192 13.223 22.383 1 49.9 ? CG PHE 303 A 1 HETATM 7 C CD1 PHE . . . E 3 2.566 14.498 22.838 1 47.79 ? CD1 PHE 303 A 1 HETATM 8 C CD2 PHE . . . E 3 2.545 12.841 21.084 1 48.18 ? CD2 PHE 303 A 1 HETATM 9 C CE1 PHE . . . E 3 3.292 15.355 22.026 1 52.46 ? CE1 PHE 303 A 1 HETATM 10 C CE2 PHE . . . E 3 3.241 13.711 20.244 1 50.42 ? CE2 PHE 303 A 1 HETATM 11 C CZ PHE . . . E 3 3.619 14.967 20.689 1 49.49 ? CZ PHE 303 A 1 HETATM 12 O OXT PHE . . . E 3 2.041 9.57 22.026 1 48.77 ? OXT PHE 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #