data_2QNX # _model_server_result.job_id BnmnXq5nn76_KWmBGvLayQ _model_server_result.datetime_utc '2024-11-27 16:05:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":860}' # _entry.id 2QNX # _exptl.entry_id 2QNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 218.356 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'O-DECYL HYDROGEN THIOCARBONATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QNX _cell.length_a 68.285 _cell.length_b 88.981 _cell.length_c 230.252 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 122 A CYS 112 1_555 D S1 MDX . A MDX 861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? covale ? covale2 B SG CYS 122 B CYS 112 1_555 F S1 MDX . B MDX 861 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? # _chem_comp.formula 'C11 H22 O2 S' _chem_comp.formula_weight 218.356 _chem_comp.id UDT _chem_comp.mon_nstd_flag . _chem_comp.name 'O-DECYL HYDROGEN THIOCARBONATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 UDT sing 393 n n C11 H111 UDT sing 394 n n C11 H112 UDT sing 395 n n C11 H113 UDT sing 396 n n C10 C9 UDT sing 397 n n C10 H101 UDT sing 398 n n C10 H102 UDT sing 399 n n C9 C8 UDT sing 400 n n C9 H91 UDT sing 401 n n C9 H92 UDT sing 402 n n C8 C7 UDT sing 403 n n C8 H81 UDT sing 404 n n C8 H82 UDT sing 405 n n C7 C6 UDT sing 406 n n C7 H71 UDT sing 407 n n C7 H72 UDT sing 408 n n C6 C5 UDT sing 409 n n C6 H61 UDT sing 410 n n C6 H62 UDT sing 411 n n C5 C4 UDT sing 412 n n C5 H51 UDT sing 413 n n C5 H52 UDT sing 414 n n C4 C3 UDT sing 415 n n C4 H41 UDT sing 416 n n C4 H42 UDT sing 417 n n C3 C2 UDT sing 418 n n C3 H31 UDT sing 419 n n C3 H32 UDT sing 420 n n C2 O2 UDT sing 421 n n C2 H21 UDT sing 422 n n C2 H22 UDT sing 423 n n O2 C1 UDT sing 424 n n C1 S1 UDT sing 425 n n C1 O1 UDT doub 426 n n S1 HS1 UDT sing 427 n n # _atom_sites.entry_id 2QNX _atom_sites.fract_transf_matrix[1][1] 0.014645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UDT A 1 860 860 UDT UDT . D 3 MDX A 1 861 861 MDX MDX . E 2 UDT B 1 860 860 UDT UDT . F 3 MDX B 1 861 861 MDX MDX . G 4 HOH A 1 862 2 HOH HOH . G 4 HOH A 2 863 3 HOH HOH . G 4 HOH A 3 864 4 HOH HOH . G 4 HOH A 4 865 5 HOH HOH . G 4 HOH A 5 866 6 HOH HOH . G 4 HOH A 6 867 7 HOH HOH . G 4 HOH A 7 868 8 HOH HOH . G 4 HOH A 8 869 9 HOH HOH . G 4 HOH A 9 870 10 HOH HOH . G 4 HOH A 10 871 11 HOH HOH . G 4 HOH A 11 872 12 HOH HOH . G 4 HOH A 12 873 13 HOH HOH . G 4 HOH A 13 874 16 HOH HOH . G 4 HOH A 14 875 17 HOH HOH . G 4 HOH A 15 876 18 HOH HOH . G 4 HOH A 16 877 20 HOH HOH . G 4 HOH A 17 879 22 HOH HOH . G 4 HOH A 18 880 26 HOH HOH . G 4 HOH A 19 881 27 HOH HOH . G 4 HOH A 20 882 28 HOH HOH . G 4 HOH A 21 883 31 HOH HOH . G 4 HOH A 22 884 32 HOH HOH . G 4 HOH A 23 885 33 HOH HOH . G 4 HOH A 24 886 37 HOH HOH . G 4 HOH A 25 887 38 HOH HOH . G 4 HOH A 26 888 82 HOH HOH . G 4 HOH A 27 889 83 HOH HOH . G 4 HOH A 28 890 84 HOH HOH . G 4 HOH A 29 891 85 HOH HOH . G 4 HOH A 30 892 86 HOH HOH . G 4 HOH A 31 893 87 HOH HOH . G 4 HOH A 32 894 88 HOH HOH . G 4 HOH A 33 895 89 HOH HOH . G 4 HOH A 34 896 90 HOH HOH . G 4 HOH A 35 897 91 HOH HOH . G 4 HOH A 36 898 92 HOH HOH . G 4 HOH A 37 899 98 HOH HOH . G 4 HOH A 38 900 99 HOH HOH . G 4 HOH A 39 901 101 HOH HOH . G 4 HOH A 40 902 103 HOH HOH . G 4 HOH A 41 903 105 HOH HOH . G 4 HOH A 42 904 106 HOH HOH . G 4 HOH A 43 905 109 HOH HOH . G 4 HOH A 44 906 110 HOH HOH . G 4 HOH A 45 907 111 HOH HOH . G 4 HOH A 46 908 114 HOH HOH . G 4 HOH A 47 909 115 HOH HOH . G 4 HOH A 48 910 119 HOH HOH . G 4 HOH A 49 911 123 HOH HOH . G 4 HOH A 50 912 124 HOH HOH . H 4 HOH B 1 862 21 HOH HOH . H 4 HOH B 2 863 14 HOH HOH . H 4 HOH B 3 864 15 HOH HOH . H 4 HOH B 4 865 23 HOH HOH . H 4 HOH B 5 866 24 HOH HOH . H 4 HOH B 6 867 25 HOH HOH . H 4 HOH B 7 868 30 HOH HOH . H 4 HOH B 8 869 40 HOH HOH . H 4 HOH B 9 870 41 HOH HOH . H 4 HOH B 10 871 42 HOH HOH . H 4 HOH B 11 872 43 HOH HOH . H 4 HOH B 12 873 44 HOH HOH . H 4 HOH B 13 874 45 HOH HOH . H 4 HOH B 14 875 46 HOH HOH . H 4 HOH B 15 876 47 HOH HOH . H 4 HOH B 16 877 48 HOH HOH . H 4 HOH B 17 878 49 HOH HOH . H 4 HOH B 18 879 50 HOH HOH . H 4 HOH B 19 880 51 HOH HOH . H 4 HOH B 20 881 52 HOH HOH . H 4 HOH B 21 882 53 HOH HOH . H 4 HOH B 22 883 54 HOH HOH . H 4 HOH B 23 884 55 HOH HOH . H 4 HOH B 24 885 56 HOH HOH . H 4 HOH B 25 886 57 HOH HOH . H 4 HOH B 26 887 58 HOH HOH . H 4 HOH B 27 888 59 HOH HOH . H 4 HOH B 28 889 60 HOH HOH . H 4 HOH B 29 890 62 HOH HOH . H 4 HOH B 30 891 65 HOH HOH . H 4 HOH B 31 892 66 HOH HOH . H 4 HOH B 32 893 67 HOH HOH . H 4 HOH B 33 894 68 HOH HOH . H 4 HOH B 34 895 71 HOH HOH . H 4 HOH B 35 896 72 HOH HOH . H 4 HOH B 36 897 73 HOH HOH . H 4 HOH B 37 898 74 HOH HOH . H 4 HOH B 38 899 75 HOH HOH . H 4 HOH B 39 900 76 HOH HOH . H 4 HOH B 40 901 77 HOH HOH . H 4 HOH B 41 902 78 HOH HOH . H 4 HOH B 42 903 79 HOH HOH . H 4 HOH B 43 904 80 HOH HOH . H 4 HOH B 44 905 81 HOH HOH . H 4 HOH B 45 906 93 HOH HOH . H 4 HOH B 46 907 94 HOH HOH . H 4 HOH B 47 908 95 HOH HOH . H 4 HOH B 48 909 96 HOH HOH . H 4 HOH B 49 910 97 HOH HOH . H 4 HOH B 50 911 100 HOH HOH . H 4 HOH B 51 912 104 HOH HOH . H 4 HOH B 52 913 107 HOH HOH . H 4 HOH B 53 914 112 HOH HOH . H 4 HOH B 54 915 113 HOH HOH . H 4 HOH B 55 916 116 HOH HOH . H 4 HOH B 56 917 117 HOH HOH . H 4 HOH B 57 918 118 HOH HOH . H 4 HOH B 58 919 120 HOH HOH . H 4 HOH B 59 920 121 HOH HOH . H 4 HOH B 60 921 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 UDT . . . C 2 40.293 37.109 51.893 1 42.33 ? C11 UDT 860 A 1 HETATM 2 C C10 UDT . . . C 2 39.12 36.123 51.807 1 42.04 ? C10 UDT 860 A 1 HETATM 3 C C9 UDT . . . C 2 38.91 35.648 50.362 1 41.33 ? C9 UDT 860 A 1 HETATM 4 C C8 UDT . . . C 2 37.571 36.131 49.803 1 40.82 ? C8 UDT 860 A 1 HETATM 5 C C7 UDT . . . C 2 36.455 35.108 50.059 1 40.44 ? C7 UDT 860 A 1 HETATM 6 C C6 UDT . . . C 2 35.199 35.437 49.251 1 39.89 ? C6 UDT 860 A 1 HETATM 7 C C5 UDT . . . C 2 35.022 34.454 48.09 1 40.01 ? C5 UDT 860 A 1 HETATM 8 C C4 UDT . . . C 2 33.77 34.782 47.267 1 40.2 ? C4 UDT 860 A 1 HETATM 9 C C3 UDT . . . C 2 34.084 34.718 45.772 1 40.29 ? C3 UDT 860 A 1 HETATM 10 C C2 UDT . . . C 2 32.83 34.415 44.953 1 40.63 ? C2 UDT 860 A 1 HETATM 11 O O2 UDT . . . C 2 32.918 34.981 43.615 1 40.96 ? O2 UDT 860 A 1 HETATM 12 C C1 UDT . . . C 2 32.198 34.261 42.711 1 40.22 ? C1 UDT 860 A 1 HETATM 13 O O1 UDT . . . C 2 32.71 33.862 41.667 1 39.19 ? O1 UDT 860 A 1 HETATM 14 S S1 UDT . . . C 2 30.537 33.9 43.032 1 41.97 ? S1 UDT 860 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #