data_2QPD # _model_server_result.job_id wedJ7Iz1UjvYIX3AuIiR4Q _model_server_result.datetime_utc '2024-11-22 16:42:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 2QPD # _exptl.entry_id 2QPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 920.954 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEME-AS _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QPD _cell.length_a 115.19 _cell.length_b 115.19 _cell.length_c 149.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 72 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 A ND1 HIS 239 A HIS 233 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc3 A NE2 HIS 288 A HIS 282 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A NE2 HIS 289 A HIS 283 1_555 D CU CU1 . A CU1 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 A NE2 HIS 390 A HIS 384 1_555 F FE HAS . A HAS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc6 A NE2 HIS 392 A HIS 386 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc7 B ND1 HIS 114 B HIS 114 1_555 G CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc8 B SG CYS 149 B CYS 149 1_555 G CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc9 B SG CYS 149 B CYS 149 1_555 G CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc10 B O GLN 151 B GLN 151 1_555 G CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc11 B SG CYS 153 B CYS 153 1_555 G CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc12 B SG CYS 153 B CYS 153 1_555 G CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc13 B SD MET 160 B MET 160 1_555 G CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? # _chem_comp.formula 'C54 H64 Fe N4 O6' _chem_comp.formula_weight 920.954 _chem_comp.id HAS _chem_comp.mon_nstd_flag . _chem_comp.name HEME-AS _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HAS sing 130 n n FE NB HAS sing 131 n n FE NC HAS sing 132 n n FE ND HAS sing 133 n n CHA C1A HAS doub 134 n y CHA C4D HAS sing 135 n y CHA HHA HAS sing 136 n n CHB C1D HAS doub 137 n y CHB C1B HAS sing 138 n y CHB HHB HAS sing 139 n n CHC C4B HAS doub 140 n y CHC C1C HAS sing 141 n y CHC HHC HAS sing 142 n n CHD C4C HAS sing 143 n y CHD C4A HAS doub 144 n y CHD HHD HAS sing 145 n n NA C1A HAS sing 146 n y NA C4A HAS sing 147 n y C1A C2A HAS sing 148 n y C2A C3A HAS doub 149 n y C2A CAA HAS sing 150 n n C3A C4A HAS sing 151 n y C3A CMA HAS sing 152 n n CMA HMA1 HAS sing 153 n n CMA HMA2 HAS sing 154 n n CMA HMA3 HAS sing 155 n n OMD CMD HAS doub 156 n n CAA CBA HAS sing 157 n n CAA HAA1 HAS sing 158 n n CAA HAA2 HAS sing 159 n n CBA CGA HAS sing 160 n n CBA HBA1 HAS sing 161 n n CBA HBA2 HAS sing 162 n n CGA O1A HAS doub 163 n n CGA O2A HAS sing 164 n n O2A H2A HAS sing 165 n n NB C1B HAS doub 166 n y NB C4B HAS sing 167 n y C1B C2B HAS sing 168 n n C2B C3B HAS doub 169 n n C2B CMB HAS sing 170 n n C3B C4B HAS sing 171 n n C3B C11 HAS sing 172 n n CMB HMB1 HAS sing 173 n n CMB HMB2 HAS sing 174 n n CMB HMB3 HAS sing 175 n n NC C1C HAS sing 176 n y NC C4C HAS sing 177 n y C1C C2C HAS doub 178 n y C2C C3C HAS sing 179 n y C2C CMC HAS sing 180 n n C3C C4C HAS doub 181 n y C3C CAC HAS sing 182 n n CMC HMC1 HAS sing 183 n n CMC HMC2 HAS sing 184 n n CMC HMC3 HAS sing 185 n n CAC CBC HAS doub 186 n n CAC HAC HAS sing 187 n n CBC HBC1 HAS sing 188 n n CBC HBC2 HAS sing 189 n n ND C1D HAS sing 190 n y ND C4D HAS doub 191 n y C1D C2D HAS sing 192 n n C2D C3D HAS doub 193 n n C2D CMD HAS sing 194 n n C3D C4D HAS sing 195 n n C3D CAD HAS sing 196 n n CMD HMD HAS sing 197 n n CAD CBD HAS sing 198 n n CAD HAD1 HAS sing 199 n n CAD HAD2 HAS sing 200 n n CBD CGD HAS sing 201 n n CBD HBD1 HAS sing 202 n n CBD HBD2 HAS sing 203 n n CGD O1D HAS doub 204 n n CGD O2D HAS sing 205 n n O2D H2D HAS sing 206 n n C11 O11 HAS sing 207 n n C11 C12 HAS sing 208 n n C11 H11 HAS sing 209 n n O11 HO1 HAS sing 210 n n C12 C13 HAS sing 211 n n C12 H121 HAS sing 212 n n C12 H122 HAS sing 213 n n C13 C14 HAS sing 214 n n C13 H131 HAS sing 215 n n C13 H132 HAS sing 216 n n C14 C15 HAS doub 217 e n C14 H14 HAS sing 218 n n C15 C16 HAS sing 219 n n C15 C26 HAS sing 220 n n C16 C17 HAS sing 221 n n C16 H161 HAS sing 222 n n C16 H162 HAS sing 223 n n C17 C18 HAS sing 224 n n C17 H171 HAS sing 225 n n C17 H172 HAS sing 226 n n C18 C19 HAS doub 227 e n C18 H18 HAS sing 228 n n C19 C20 HAS sing 229 n n C19 C27 HAS sing 230 n n C20 C21 HAS sing 231 n n C20 H201 HAS sing 232 n n C20 H202 HAS sing 233 n n C21 C22 HAS sing 234 n n C21 H211 HAS sing 235 n n C21 H212 HAS sing 236 n n C22 C23 HAS doub 237 e n C22 H22 HAS sing 238 n n C23 C24 HAS sing 239 n n C23 C25 HAS sing 240 n n C24 C28 HAS sing 241 n n C24 H241 HAS sing 242 n n C24 H242 HAS sing 243 n n C25 H251 HAS sing 244 n n C25 H252 HAS sing 245 n n C25 H253 HAS sing 246 n n C26 H261 HAS sing 247 n n C26 H262 HAS sing 248 n n C26 H263 HAS sing 249 n n C27 H271 HAS sing 250 n n C27 H272 HAS sing 251 n n C27 H273 HAS sing 252 n n C28 C29 HAS sing 253 n n C28 H281 HAS sing 254 n n C28 H282 HAS sing 255 n n C29 C30 HAS doub 256 n n C29 H29 HAS sing 257 n n C30 C31 HAS sing 258 n n C30 C32 HAS sing 259 n n C31 H311 HAS sing 260 n n C31 H312 HAS sing 261 n n C31 H313 HAS sing 262 n n C32 H321 HAS sing 263 n n C32 H322 HAS sing 264 n n C32 H323 HAS sing 265 n n # _atom_sites.entry_id 2QPD _atom_sites.fract_transf_matrix[1][1] 0.008681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU1 A 1 803 803 CU1 CU1 . E 5 HEM A 1 800 800 HEM HEM . F 6 HAS A 1 801 801 HAS HAS . G 7 CUA B 1 802 802 CUA CUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HAS . . . F 6 -29.793 24.919 -4.22 1 56.57 ? FE HAS 801 A 1 HETATM 2 C CHA HAS . . . F 6 -31.679 26.342 -1.688 1 61.25 ? CHA HAS 801 A 1 HETATM 3 C CHB HAS . . . F 6 -29.632 28.175 -5.837 1 63.61 ? CHB HAS 801 A 1 HETATM 4 C CHC HAS . . . F 6 -27.661 23.591 -6.715 1 51.52 ? CHC HAS 801 A 1 HETATM 5 C CHD HAS . . . F 6 -29.123 22.232 -2.189 1 60.14 ? CHD HAS 801 A 1 HETATM 6 N NA HAS . . . F 6 -30.34 24.383 -2.447 1 50.91 ? NA HAS 801 A 1 HETATM 7 C C1A HAS . . . F 6 -31.012 25.058 -1.608 1 55.21 ? C1A HAS 801 A 1 HETATM 8 C C2A HAS . . . F 6 -31.123 24.631 -0.176 1 70.1 ? C2A HAS 801 A 1 HETATM 9 C C3A HAS . . . F 6 -30.493 23.285 -0.361 1 62.82 ? C3A HAS 801 A 1 HETATM 10 C C4A HAS . . . F 6 -30.027 23.357 -1.81 1 49.31 ? C4A HAS 801 A 1 HETATM 11 C CMA HAS . . . F 6 -31.404 22.132 0.001 1 62.12 ? CMA HAS 801 A 1 HETATM 12 O OMD HAS . . . F 6 -29.941 30.839 -4.635 1 48.66 ? OMD HAS 801 A 1 HETATM 13 C CAA HAS . . . F 6 -32.514 24.853 0.486 1 54.21 ? CAA HAS 801 A 1 HETATM 14 C CBA HAS . . . F 6 -32.54 26.189 1.265 1 47.28 ? CBA HAS 801 A 1 HETATM 15 C CGA HAS . . . F 6 -32.819 25.954 2.78 1 59.8 ? CGA HAS 801 A 1 HETATM 16 O O1A HAS . . . F 6 -32.673 24.763 3.224 1 57.2 ? O1A HAS 801 A 1 HETATM 17 O O2A HAS . . . F 6 -33.187 26.919 3.6 1 27.51 ? O2A HAS 801 A 1 HETATM 18 N NB HAS . . . F 6 -28.873 25.708 -5.911 1 68.57 ? NB HAS 801 A 1 HETATM 19 C C1B HAS . . . F 6 -28.889 26.994 -6.331 1 68.39 ? C1B HAS 801 A 1 HETATM 20 C C2B HAS . . . F 6 -28.088 27.167 -7.463 1 69.86 ? C2B HAS 801 A 1 HETATM 21 C C3B HAS . . . F 6 -27.521 25.907 -7.719 1 68.51 ? C3B HAS 801 A 1 HETATM 22 C C4B HAS . . . F 6 -28.021 25.046 -6.719 1 68.96 ? C4B HAS 801 A 1 HETATM 23 C CMB HAS . . . F 6 -27.93 28.477 -8.225 1 40 ? CMB HAS 801 A 1 HETATM 24 N NC HAS . . . F 6 -28.666 23.224 -4.419 1 57.66 ? NC HAS 801 A 1 HETATM 25 C C1C HAS . . . F 6 -27.939 22.867 -5.457 1 42.93 ? C1C HAS 801 A 1 HETATM 26 C C2C HAS . . . F 6 -27.065 21.667 -5.348 1 51.4 ? C2C HAS 801 A 1 HETATM 27 C C3C HAS . . . F 6 -27.61 21.386 -4.042 1 52.58 ? C3C HAS 801 A 1 HETATM 28 C C4C HAS . . . F 6 -28.474 22.306 -3.486 1 52.11 ? C4C HAS 801 A 1 HETATM 29 C CMC HAS . . . F 6 -27.208 20.519 -6.318 1 57.81 ? CMC HAS 801 A 1 HETATM 30 C CAC HAS . . . F 6 -27.185 20.258 -3.475 1 42.54 ? CAC HAS 801 A 1 HETATM 31 C CBC HAS . . . F 6 -26.716 19.16 -3.078 1 37 ? CBC HAS 801 A 1 HETATM 32 N ND HAS . . . F 6 -30.526 26.855 -3.827 1 68.98 ? ND HAS 801 A 1 HETATM 33 C C1D HAS . . . F 6 -30.341 27.945 -4.554 1 65.78 ? C1D HAS 801 A 1 HETATM 34 C C2D HAS . . . F 6 -31.003 29.034 -3.846 1 57.69 ? C2D HAS 801 A 1 HETATM 35 C C3D HAS . . . F 6 -31.573 28.557 -2.609 1 66.37 ? C3D HAS 801 A 1 HETATM 36 C C4D HAS . . . F 6 -31.212 27.218 -2.738 1 56.46 ? C4D HAS 801 A 1 HETATM 37 C CMD HAS . . . F 6 -31.029 30.413 -4.291 1 42.71 ? CMD HAS 801 A 1 HETATM 38 C CAD HAS . . . F 6 -32.386 29.316 -1.519 1 47.76 ? CAD HAS 801 A 1 HETATM 39 C CBD HAS . . . F 6 -33.576 29.976 -2.264 1 45.19 ? CBD HAS 801 A 1 HETATM 40 C CGD HAS . . . F 6 -34.642 30.576 -1.325 1 38.4 ? CGD HAS 801 A 1 HETATM 41 O O1D HAS . . . F 6 -35.388 31.565 -1.799 1 44.02 ? O1D HAS 801 A 1 HETATM 42 O O2D HAS . . . F 6 -34.748 30.095 -0.096 1 17.3 ? O2D HAS 801 A 1 HETATM 43 C C11 HAS . . . F 6 -26.594 25.52 -8.822 1 51.16 ? C11 HAS 801 A 1 HETATM 44 O O11 HAS . . . F 6 -25.674 24.51 -8.353 1 76.28 ? O11 HAS 801 A 1 HETATM 45 C C12 HAS . . . F 6 -27.321 24.903 -10.01 1 35.59 ? C12 HAS 801 A 1 HETATM 46 C C13 HAS . . . F 6 -26.311 24.428 -11.101 1 49.21 ? C13 HAS 801 A 1 HETATM 47 C C14 HAS . . . F 6 -26.799 23.084 -11.608 1 50.85 ? C14 HAS 801 A 1 HETATM 48 C C15 HAS . . . F 6 -27.253 22.761 -12.877 1 45.69 ? C15 HAS 801 A 1 HETATM 49 C C16 HAS . . . F 6 -27.728 21.319 -13.262 1 47.56 ? C16 HAS 801 A 1 HETATM 50 C C17 HAS . . . F 6 -27.265 20.874 -14.678 1 64.06 ? C17 HAS 801 A 1 HETATM 51 C C18 HAS . . . F 6 -27.518 19.39 -14.859 1 65.1 ? C18 HAS 801 A 1 HETATM 52 C C19 HAS . . . F 6 -26.46 18.581 -14.981 1 67.09 ? C19 HAS 801 A 1 HETATM 53 C C20 HAS . . . F 6 -26.663 17.097 -15.125 1 77.76 ? C20 HAS 801 A 1 HETATM 54 C C21 HAS . . . F 6 -27.099 16.754 -16.541 1 82.6 ? C21 HAS 801 A 1 HETATM 55 C C22 HAS . . . F 6 -27.642 15.334 -16.438 1 85.75 ? C22 HAS 801 A 1 HETATM 56 C C23 HAS . . . F 6 -27.18 14.395 -17.281 1 78.29 ? C23 HAS 801 A 1 HETATM 57 C C24 HAS . . . F 6 -27.734 12.982 -17.222 1 53.47 ? C24 HAS 801 A 1 HETATM 58 C C25 HAS . . . F 6 -26.153 14.772 -18.346 1 69.96 ? C25 HAS 801 A 1 HETATM 59 C C26 HAS . . . F 6 -27.264 23.782 -13.987 1 29.18 ? C26 HAS 801 A 1 HETATM 60 C C27 HAS . . . F 6 -25.062 19.134 -14.873 1 65.92 ? C27 HAS 801 A 1 HETATM 61 C C28 HAS . . . F 6 -27.9 12.687 -18.737 1 46.02 ? C28 HAS 801 A 1 HETATM 62 C C29 HAS . . . F 6 -27.934 11.195 -18.975 1 53.19 ? C29 HAS 801 A 1 HETATM 63 C C30 HAS . . . F 6 -28.717 10.502 -19.858 1 55.7 ? C30 HAS 801 A 1 HETATM 64 C C31 HAS . . . F 6 -28.533 9.022 -19.846 1 48.88 ? C31 HAS 801 A 1 HETATM 65 C C32 HAS . . . F 6 -29.743 11.052 -20.849 1 50.57 ? C32 HAS 801 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 65 #