data_2QQ9 # _model_server_result.job_id fc-qwPo9HP7jluxprXASUw _model_server_result.datetime_utc '2024-12-27 02:23:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":552}' # _entry.id 2QQ9 # _exptl.entry_id 2QQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QQ9 _cell.length_a 62.711 _cell.length_b 62.711 _cell.length_c 107.414 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 35.804667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 79 1_555 B NI NI . A NI 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 A OE2 GLU 83 A GLU 83 1_555 B NI NI . A NI 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 A ND1 HIS 98 A HIS 98 1_555 B NI NI . A NI 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc4 A O ASP 102 A ASP 102 1_555 C NI NI . A NI 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc5 A OD1 ASP 102 A ASP 102 1_555 C NI NI . A NI 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc6 A OE2 GLU 105 A GLU 105 1_555 C NI NI . A NI 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc7 A NE2 HIS 106 A HIS 106 1_555 C NI NI . A NI 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc8 B NI NI . A NI 551 1_555 D O1 PO4 . A PO4 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc9 B NI NI . A NI 551 1_555 E O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc10 B NI NI . A NI 551 1_555 E O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc11 C NI NI . A NI 552 1_555 E O HOH . A HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2QQ9 _atom_sites.fract_transf_matrix[1][1] 0.015946 _atom_sites.fract_transf_matrix[1][2] 0.009207 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 551 551 NI NI . C 2 NI A 1 552 552 NI NI . D 3 PO4 A 1 600 600 PO4 PO4 . E 4 HOH A 1 601 1 HOH HOH . E 4 HOH A 2 602 2 HOH HOH . E 4 HOH A 3 603 3 HOH HOH . E 4 HOH A 4 604 4 HOH HOH . E 4 HOH A 5 605 5 HOH HOH . E 4 HOH A 6 606 6 HOH HOH . E 4 HOH A 7 607 7 HOH HOH . E 4 HOH A 8 608 8 HOH HOH . E 4 HOH A 9 609 9 HOH HOH . E 4 HOH A 10 610 10 HOH HOH . E 4 HOH A 11 611 11 HOH HOH . E 4 HOH A 12 612 12 HOH HOH . E 4 HOH A 13 613 13 HOH HOH . E 4 HOH A 14 614 14 HOH HOH . E 4 HOH A 15 615 15 HOH HOH . E 4 HOH A 16 616 16 HOH HOH . E 4 HOH A 17 617 17 HOH HOH . E 4 HOH A 18 618 18 HOH HOH . E 4 HOH A 19 619 19 HOH HOH . E 4 HOH A 20 620 20 HOH HOH . E 4 HOH A 21 621 21 HOH HOH . E 4 HOH A 22 622 22 HOH HOH . E 4 HOH A 23 623 23 HOH HOH . E 4 HOH A 24 624 24 HOH HOH . E 4 HOH A 25 625 25 HOH HOH . E 4 HOH A 26 626 26 HOH HOH . E 4 HOH A 27 627 27 HOH HOH . E 4 HOH A 28 628 28 HOH HOH . E 4 HOH A 29 629 29 HOH HOH . E 4 HOH A 30 630 30 HOH HOH . E 4 HOH A 31 631 31 HOH HOH . E 4 HOH A 32 632 32 HOH HOH . E 4 HOH A 33 633 33 HOH HOH . E 4 HOH A 34 634 34 HOH HOH . E 4 HOH A 35 635 35 HOH HOH . E 4 HOH A 36 636 36 HOH HOH . E 4 HOH A 37 637 37 HOH HOH . E 4 HOH A 38 638 38 HOH HOH . E 4 HOH A 39 639 39 HOH HOH . E 4 HOH A 40 640 40 HOH HOH . E 4 HOH A 41 641 41 HOH HOH . E 4 HOH A 42 642 42 HOH HOH . E 4 HOH A 43 643 43 HOH HOH . E 4 HOH A 44 644 44 HOH HOH . E 4 HOH A 45 645 45 HOH HOH . E 4 HOH A 46 646 46 HOH HOH . E 4 HOH A 47 647 47 HOH HOH . E 4 HOH A 48 648 48 HOH HOH . E 4 HOH A 49 649 49 HOH HOH . E 4 HOH A 50 650 50 HOH HOH . E 4 HOH A 51 651 51 HOH HOH . E 4 HOH A 52 652 52 HOH HOH . E 4 HOH A 53 653 53 HOH HOH . E 4 HOH A 54 654 54 HOH HOH . E 4 HOH A 55 655 55 HOH HOH . E 4 HOH A 56 656 56 HOH HOH . E 4 HOH A 57 657 57 HOH HOH . E 4 HOH A 58 658 58 HOH HOH . E 4 HOH A 59 659 59 HOH HOH . E 4 HOH A 60 660 60 HOH HOH . E 4 HOH A 61 661 61 HOH HOH . E 4 HOH A 62 662 62 HOH HOH . E 4 HOH A 63 663 63 HOH HOH . E 4 HOH A 64 664 64 HOH HOH . E 4 HOH A 65 665 65 HOH HOH . E 4 HOH A 66 666 66 HOH HOH . E 4 HOH A 67 667 67 HOH HOH . E 4 HOH A 68 668 68 HOH HOH . E 4 HOH A 69 669 69 HOH HOH . E 4 HOH A 70 670 70 HOH HOH . E 4 HOH A 71 671 71 HOH HOH . E 4 HOH A 72 672 72 HOH HOH . E 4 HOH A 73 673 73 HOH HOH . E 4 HOH A 74 674 74 HOH HOH . E 4 HOH A 75 675 75 HOH HOH . E 4 HOH A 76 676 76 HOH HOH . E 4 HOH A 77 677 77 HOH HOH . E 4 HOH A 78 678 78 HOH HOH . E 4 HOH A 79 679 79 HOH HOH . E 4 HOH A 80 680 80 HOH HOH . E 4 HOH A 81 681 81 HOH HOH . E 4 HOH A 82 682 82 HOH HOH . E 4 HOH A 83 683 83 HOH HOH . E 4 HOH A 84 684 84 HOH HOH . E 4 HOH A 85 685 85 HOH HOH . E 4 HOH A 86 686 86 HOH HOH . E 4 HOH A 87 687 87 HOH HOH . E 4 HOH A 88 688 88 HOH HOH . E 4 HOH A 89 689 89 HOH HOH . E 4 HOH A 90 690 90 HOH HOH . E 4 HOH A 91 691 91 HOH HOH . E 4 HOH A 92 692 92 HOH HOH . E 4 HOH A 93 693 93 HOH HOH . E 4 HOH A 94 694 94 HOH HOH . E 4 HOH A 95 695 95 HOH HOH . E 4 HOH A 96 696 96 HOH HOH . E 4 HOH A 97 697 97 HOH HOH . E 4 HOH A 98 698 98 HOH HOH . E 4 HOH A 99 699 99 HOH HOH . E 4 HOH A 100 700 100 HOH HOH . E 4 HOH A 101 701 101 HOH HOH . E 4 HOH A 102 702 102 HOH HOH . E 4 HOH A 103 703 103 HOH HOH . E 4 HOH A 104 704 104 HOH HOH . E 4 HOH A 105 705 105 HOH HOH . E 4 HOH A 106 706 106 HOH HOH . E 4 HOH A 107 707 107 HOH HOH . E 4 HOH A 108 708 108 HOH HOH . E 4 HOH A 109 709 109 HOH HOH . E 4 HOH A 110 710 110 HOH HOH . E 4 HOH A 111 711 111 HOH HOH . E 4 HOH A 112 712 112 HOH HOH . E 4 HOH A 113 713 113 HOH HOH . E 4 HOH A 114 714 114 HOH HOH . E 4 HOH A 115 715 115 HOH HOH . E 4 HOH A 116 716 116 HOH HOH . E 4 HOH A 117 717 117 HOH HOH . E 4 HOH A 118 718 118 HOH HOH . E 4 HOH A 119 719 119 HOH HOH . E 4 HOH A 120 720 120 HOH HOH . E 4 HOH A 121 721 121 HOH HOH . E 4 HOH A 122 722 122 HOH HOH . E 4 HOH A 123 723 123 HOH HOH . E 4 HOH A 124 724 124 HOH HOH . E 4 HOH A 125 725 125 HOH HOH . E 4 HOH A 126 726 126 HOH HOH . E 4 HOH A 127 727 127 HOH HOH . E 4 HOH A 128 728 128 HOH HOH . E 4 HOH A 129 729 129 HOH HOH . E 4 HOH A 130 730 130 HOH HOH . E 4 HOH A 131 731 131 HOH HOH . E 4 HOH A 132 732 132 HOH HOH . E 4 HOH A 133 733 133 HOH HOH . E 4 HOH A 134 734 134 HOH HOH . E 4 HOH A 135 735 135 HOH HOH . E 4 HOH A 136 736 136 HOH HOH . E 4 HOH A 137 737 137 HOH HOH . E 4 HOH A 138 738 138 HOH HOH . E 4 HOH A 139 739 139 HOH HOH . E 4 HOH A 140 740 140 HOH HOH . E 4 HOH A 141 741 141 HOH HOH . E 4 HOH A 142 742 142 HOH HOH . E 4 HOH A 143 743 143 HOH HOH . E 4 HOH A 144 744 144 HOH HOH . E 4 HOH A 145 745 145 HOH HOH . E 4 HOH A 146 746 146 HOH HOH . E 4 HOH A 147 747 147 HOH HOH . E 4 HOH A 148 748 148 HOH HOH . E 4 HOH A 149 749 149 HOH HOH . E 4 HOH A 150 750 150 HOH HOH . E 4 HOH A 151 751 151 HOH HOH . E 4 HOH A 152 752 152 HOH HOH . E 4 HOH A 153 753 153 HOH HOH . E 4 HOH A 154 754 154 HOH HOH . E 4 HOH A 155 755 155 HOH HOH . E 4 HOH A 156 756 156 HOH HOH . E 4 HOH A 157 757 157 HOH HOH . E 4 HOH A 158 758 158 HOH HOH . E 4 HOH A 159 759 159 HOH HOH . E 4 HOH A 160 760 160 HOH HOH . E 4 HOH A 161 761 161 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.589 _atom_site.Cartn_y 26.319 _atom_site.Cartn_z 9.822 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 552 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #