data_2QQB
#
_model_server_result.job_id            8VMSWhFcFRdcfepHccTg8w 
_model_server_result.datetime_utc      '2025-07-30 19:31:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qqb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":552}' 
#
_entry.id    2QQB 
#
_exptl.entry_id    2QQB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2QQB 
_cell.length_a            62.32 
_cell.length_b            62.32 
_cell.length_c            104.582 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QQB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 79 A HIS 79 1_555 B NI NI . A NI 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc2 A OE2 GLU 83 A GLU 83 1_555 B NI NI . A NI 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc3 A ND1 HIS 98 A HIS 98 1_555 B NI NI . A NI 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc4 A O ASP 102 A ASP 102 1_555 C NI NI . A NI 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc5 A OD1 ASP 102 A ASP 102 1_555 C NI NI . A NI 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc6 A OE2 GLU 105 A GLU 105 1_555 C NI NI . A NI 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc7 A NE2 HIS 106 A HIS 106 1_555 C NI NI . A NI 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc8 B NI NI . A NI 551 1_555 D O2 PO4 . A PO4 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc9 B NI NI . A NI 551 1_555 E O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc10 C NI NI . A NI 552 1_555 E O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc11 C NI NI . A NI 552 1_555 E O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2QQB 
_atom_sites.fract_transf_matrix[1][1]    0.016046 
_atom_sites.fract_transf_matrix[1][2]    0.009264 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018528 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009562 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 551 551 NI NI . 
C 2 NI A 1 552 552 NI NI . 
D 3 PO4 A 1 600 600 PO4 PO4 . 
E 4 HOH A 1 601 1 HOH HOH . 
E 4 HOH A 2 602 2 HOH HOH . 
E 4 HOH A 3 603 3 HOH HOH . 
E 4 HOH A 4 604 4 HOH HOH . 
E 4 HOH A 5 605 5 HOH HOH . 
E 4 HOH A 6 606 6 HOH HOH . 
E 4 HOH A 7 607 7 HOH HOH . 
E 4 HOH A 8 608 8 HOH HOH . 
E 4 HOH A 9 609 9 HOH HOH . 
E 4 HOH A 10 610 10 HOH HOH . 
E 4 HOH A 11 611 11 HOH HOH . 
E 4 HOH A 12 612 12 HOH HOH . 
E 4 HOH A 13 613 13 HOH HOH . 
E 4 HOH A 14 614 14 HOH HOH . 
E 4 HOH A 15 615 15 HOH HOH . 
E 4 HOH A 16 616 16 HOH HOH . 
E 4 HOH A 17 617 17 HOH HOH . 
E 4 HOH A 18 618 18 HOH HOH . 
E 4 HOH A 19 619 19 HOH HOH . 
E 4 HOH A 20 620 20 HOH HOH . 
E 4 HOH A 21 621 21 HOH HOH . 
E 4 HOH A 22 622 22 HOH HOH . 
E 4 HOH A 23 623 23 HOH HOH . 
E 4 HOH A 24 624 24 HOH HOH . 
E 4 HOH A 25 625 25 HOH HOH . 
E 4 HOH A 26 626 26 HOH HOH . 
E 4 HOH A 27 627 27 HOH HOH . 
E 4 HOH A 28 628 28 HOH HOH . 
E 4 HOH A 29 629 29 HOH HOH . 
E 4 HOH A 30 630 30 HOH HOH . 
E 4 HOH A 31 631 31 HOH HOH . 
E 4 HOH A 32 632 32 HOH HOH . 
E 4 HOH A 33 633 33 HOH HOH . 
E 4 HOH A 34 634 34 HOH HOH . 
E 4 HOH A 35 635 35 HOH HOH . 
E 4 HOH A 36 636 36 HOH HOH . 
E 4 HOH A 37 637 37 HOH HOH . 
E 4 HOH A 38 638 38 HOH HOH . 
E 4 HOH A 39 639 39 HOH HOH . 
E 4 HOH A 40 640 40 HOH HOH . 
E 4 HOH A 41 641 41 HOH HOH . 
E 4 HOH A 42 642 42 HOH HOH . 
E 4 HOH A 43 643 43 HOH HOH . 
E 4 HOH A 44 644 44 HOH HOH . 
E 4 HOH A 45 645 45 HOH HOH . 
E 4 HOH A 46 646 46 HOH HOH . 
E 4 HOH A 47 647 47 HOH HOH . 
E 4 HOH A 48 648 48 HOH HOH . 
E 4 HOH A 49 649 49 HOH HOH . 
E 4 HOH A 50 650 50 HOH HOH . 
E 4 HOH A 51 651 51 HOH HOH . 
E 4 HOH A 52 652 52 HOH HOH . 
E 4 HOH A 53 653 53 HOH HOH . 
E 4 HOH A 54 654 54 HOH HOH . 
E 4 HOH A 55 655 55 HOH HOH . 
E 4 HOH A 56 656 56 HOH HOH . 
E 4 HOH A 57 657 57 HOH HOH . 
E 4 HOH A 58 658 58 HOH HOH . 
E 4 HOH A 59 659 59 HOH HOH . 
E 4 HOH A 60 660 60 HOH HOH . 
E 4 HOH A 61 661 61 HOH HOH . 
E 4 HOH A 62 662 62 HOH HOH . 
E 4 HOH A 63 663 63 HOH HOH . 
E 4 HOH A 64 664 64 HOH HOH . 
E 4 HOH A 65 665 65 HOH HOH . 
E 4 HOH A 66 666 66 HOH HOH . 
E 4 HOH A 67 667 67 HOH HOH . 
E 4 HOH A 68 668 68 HOH HOH . 
E 4 HOH A 69 669 69 HOH HOH . 
E 4 HOH A 70 670 70 HOH HOH . 
E 4 HOH A 71 671 71 HOH HOH . 
E 4 HOH A 72 672 72 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -17.644 
_atom_site.Cartn_y               -23.499 
_atom_site.Cartn_z               -7.804 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        24.8 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           552 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#