data_2QQG # _model_server_result.job_id elZURPs9EtlKuzwm7scEug _model_server_result.datetime_utc '2024-10-18 22:15:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qqg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3721}' # _entry.id 2QQG # _exptl.entry_id 2QQG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.125 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QQG _cell.length_a 105.94 _cell.length_b 105.94 _cell.length_c 67.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QQG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 183.493463 22.366667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ALA 4 B ALA 15 1_555 B N ALY 5 B ALY 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C ALY 5 B ALY 16 1_555 B N ARG 6 B ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A SG CYS 157 A CYS 143 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A SG CYS 160 A CYS 146 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A SG CYS 184 A CYS 170 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc4 A SG CYS 187 A CYS 173 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? # _chem_comp.formula 'C6 H6 N2 O' _chem_comp.formula_weight 122.125 _chem_comp.id NCA _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NCA doub 327 n y N1 C6 NCA sing 328 n y C2 C3 NCA sing 329 n y C2 H2 NCA sing 330 n n C3 C4 NCA doub 331 n y C3 C7 NCA sing 332 n n C4 C5 NCA sing 333 n y C4 H4 NCA sing 334 n n C5 C6 NCA doub 335 n y C5 H5 NCA sing 336 n n C6 H6 NCA sing 337 n n C7 O7 NCA doub 338 n n C7 N7 NCA sing 339 n n N7 HN71 NCA sing 340 n n N7 HN72 NCA sing 341 n n # _atom_sites.entry_id 2QQG _atom_sites.fract_transf_matrix[1][1] 0.009439 _atom_sites.fract_transf_matrix[1][2] 0.00545 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 701 ZN ZN . D 4 A1R A 1 1001 1001 A1R A1R . E 5 NCA A 1 3721 3721 NCA NCA . F 6 HOH A 1 3722 3722 HOH HOH . F 6 HOH A 2 3723 3723 HOH HOH . F 6 HOH A 3 3724 3724 HOH HOH . F 6 HOH A 4 3725 3725 HOH HOH . F 6 HOH A 5 3726 3726 HOH HOH . F 6 HOH A 6 3727 3727 HOH HOH . F 6 HOH A 7 3728 3728 HOH HOH . F 6 HOH A 8 3729 3729 HOH HOH . F 6 HOH A 9 3730 3730 HOH HOH . F 6 HOH A 10 3731 3731 HOH HOH . F 6 HOH A 11 3732 3732 HOH HOH . F 6 HOH A 12 3733 3733 HOH HOH . F 6 HOH A 13 3734 3734 HOH HOH . F 6 HOH A 14 3735 3735 HOH HOH . F 6 HOH A 15 3736 3736 HOH HOH . F 6 HOH A 16 3737 3737 HOH HOH . F 6 HOH A 17 3738 3738 HOH HOH . F 6 HOH A 18 3739 3739 HOH HOH . F 6 HOH A 19 3740 3740 HOH HOH . F 6 HOH A 20 3741 3741 HOH HOH . F 6 HOH A 21 3742 3742 HOH HOH . F 6 HOH A 22 3743 3743 HOH HOH . F 6 HOH A 23 3744 3744 HOH HOH . F 6 HOH A 24 3745 3745 HOH HOH . F 6 HOH A 25 3746 3746 HOH HOH . F 6 HOH A 26 3747 3747 HOH HOH . F 6 HOH A 27 3748 3748 HOH HOH . F 6 HOH A 28 3749 3749 HOH HOH . F 6 HOH A 29 3750 3750 HOH HOH . F 6 HOH A 30 3751 3751 HOH HOH . F 6 HOH A 31 3752 3752 HOH HOH . F 6 HOH A 32 3753 3753 HOH HOH . F 6 HOH A 33 3754 3754 HOH HOH . F 6 HOH A 34 3755 3755 HOH HOH . F 6 HOH A 35 3756 3756 HOH HOH . F 6 HOH A 36 3757 3757 HOH HOH . F 6 HOH A 37 3758 3758 HOH HOH . F 6 HOH A 38 3759 3759 HOH HOH . F 6 HOH A 39 3760 3760 HOH HOH . F 6 HOH A 40 3761 3761 HOH HOH . F 6 HOH A 41 3762 3762 HOH HOH . F 6 HOH A 42 3763 3763 HOH HOH . F 6 HOH A 43 3764 3764 HOH HOH . F 6 HOH A 44 3765 3765 HOH HOH . F 6 HOH A 45 3766 3766 HOH HOH . F 6 HOH A 46 3767 3767 HOH HOH . F 6 HOH A 47 3768 3768 HOH HOH . F 6 HOH A 48 3769 3769 HOH HOH . F 6 HOH A 49 3770 3770 HOH HOH . F 6 HOH A 50 3771 3771 HOH HOH . F 6 HOH A 51 3772 3772 HOH HOH . F 6 HOH A 52 3773 3773 HOH HOH . F 6 HOH A 53 3774 3774 HOH HOH . F 6 HOH A 54 3775 3775 HOH HOH . F 6 HOH A 55 3776 3776 HOH HOH . F 6 HOH A 56 3777 3777 HOH HOH . F 6 HOH A 57 3778 3778 HOH HOH . F 6 HOH A 58 3779 3779 HOH HOH . F 6 HOH A 59 3780 3780 HOH HOH . F 6 HOH A 60 3781 3781 HOH HOH . F 6 HOH A 61 3782 3782 HOH HOH . F 6 HOH A 62 3783 3783 HOH HOH . F 6 HOH A 63 3784 3784 HOH HOH . F 6 HOH A 64 3785 3785 HOH HOH . F 6 HOH A 65 3786 3786 HOH HOH . F 6 HOH A 66 3787 3787 HOH HOH . F 6 HOH A 67 3788 3788 HOH HOH . F 6 HOH A 68 3789 3789 HOH HOH . F 6 HOH A 69 3790 3790 HOH HOH . F 6 HOH A 70 3791 3791 HOH HOH . F 6 HOH A 71 3792 3792 HOH HOH . F 6 HOH A 72 3793 3793 HOH HOH . F 6 HOH A 73 3794 3794 HOH HOH . F 6 HOH A 74 3795 3795 HOH HOH . F 6 HOH A 75 3796 3796 HOH HOH . F 6 HOH A 76 3797 3797 HOH HOH . F 6 HOH A 77 3798 3798 HOH HOH . F 6 HOH A 78 3799 3799 HOH HOH . F 6 HOH A 79 3800 3800 HOH HOH . F 6 HOH A 80 3801 3801 HOH HOH . F 6 HOH A 81 3802 3802 HOH HOH . F 6 HOH A 82 3803 3803 HOH HOH . F 6 HOH A 83 3804 3804 HOH HOH . F 6 HOH A 84 3805 3805 HOH HOH . F 6 HOH A 85 3806 3806 HOH HOH . F 6 HOH A 86 3807 3807 HOH HOH . F 6 HOH A 87 3808 3808 HOH HOH . F 6 HOH A 88 3809 3809 HOH HOH . F 6 HOH A 89 3810 3810 HOH HOH . F 6 HOH A 90 3811 3811 HOH HOH . F 6 HOH A 91 3812 3812 HOH HOH . F 6 HOH A 92 3813 3813 HOH HOH . F 6 HOH A 93 3814 3814 HOH HOH . F 6 HOH A 94 3815 3815 HOH HOH . F 6 HOH A 95 3816 3816 HOH HOH . F 6 HOH A 96 3817 3817 HOH HOH . F 6 HOH A 97 3818 3818 HOH HOH . F 6 HOH A 98 3819 3819 HOH HOH . F 6 HOH A 99 3820 3820 HOH HOH . F 6 HOH A 100 3821 3821 HOH HOH . F 6 HOH A 101 3822 3822 HOH HOH . F 6 HOH A 102 3823 3823 HOH HOH . F 6 HOH A 103 3824 3824 HOH HOH . F 6 HOH A 104 3825 3825 HOH HOH . F 6 HOH A 105 3826 3826 HOH HOH . F 6 HOH A 106 3827 3827 HOH HOH . F 6 HOH A 107 3828 3828 HOH HOH . F 6 HOH A 108 3829 3829 HOH HOH . F 6 HOH A 109 3830 3830 HOH HOH . F 6 HOH A 110 3831 3831 HOH HOH . F 6 HOH A 111 3832 3832 HOH HOH . F 6 HOH A 112 3833 3833 HOH HOH . F 6 HOH A 113 3834 3834 HOH HOH . F 6 HOH A 114 3835 3835 HOH HOH . G 6 HOH B 1 28 28 HOH HOH . G 6 HOH B 2 46 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NCA . . . E 5 17.794 77.745 15.285 0.6 74.8 ? N1 NCA 3721 A 1 HETATM 2 C C2 NCA . . . E 5 16.885 77.883 14.343 0.6 74.55 ? C2 NCA 3721 A 1 HETATM 3 C C3 NCA . . . E 5 15.56 78.162 14.671 0.6 74.07 ? C3 NCA 3721 A 1 HETATM 4 C C4 NCA . . . E 5 15.208 78.285 16.019 0.6 74.56 ? C4 NCA 3721 A 1 HETATM 5 C C5 NCA . . . E 5 16.199 78.125 16.972 0.6 74.91 ? C5 NCA 3721 A 1 HETATM 6 C C6 NCA . . . E 5 17.492 77.853 16.565 0.6 74.88 ? C6 NCA 3721 A 1 HETATM 7 C C7 NCA . . . E 5 14.542 78.324 13.611 0.6 73.55 ? C7 NCA 3721 A 1 HETATM 8 O O7 NCA . . . E 5 13.388 78.564 13.909 0.6 73.2 ? O7 NCA 3721 A 1 HETATM 9 N N7 NCA . . . E 5 14.892 78.205 12.316 0.6 73.06 ? N7 NCA 3721 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #