data_2QQM # _model_server_result.job_id FkaVZcB1exMaSKa-Rw7RTw _model_server_result.datetime_utc '2024-10-22 03:44:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":607}' # _entry.id 2QQM # _exptl.entry_id 2QQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.1 _cell.angle_gamma 90 _cell.entry_id 2QQM _cell.length_a 53.177 _cell.length_b 68.178 _cell.length_c 66.613 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O6 HO6 . sing 4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG D 1 NAG 2 n B FUC 2 B 2 FUC D 2 FUC 2 n B NAG 3 B 3 NAG D 3 NAG 2 n B FUC 4 B 4 FUC D 4 FUC 3 n C NAG 1 C 1 NAG E 1 NAG 3 n C NAG 2 C 2 NAG E 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 147 1_555 A SG CYS 37 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 70 A CYS 206 1_555 A SG CYS 92 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf3 A SG CYS 139 A CYS 275 1_555 A SG CYS 288 A CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 295 A CYS 431 1_555 A SG CYS 447 A CYS 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? covale ? covale1 A ND2 ASN 14 A ASN 150 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 125 A ASN 261 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 B O3 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? metalc ? metalc1 A OE1 GLU 59 A GLU 195 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 A OD1 ASP 73 A ASP 209 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc3 A OD2 ASP 73 A ASP 209 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 A OD1 ASP 114 A ASP 250 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A O ALA 116 A ALA 252 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 A O ILE 117 A ILE 253 1_555 D CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc7 D CA CA . A CA 601 1_555 K O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2QQM _atom_sites.fract_transf_matrix[1][1] 0.018805 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004032 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 601 1 CA CA . E 5 EDO A 1 602 1 EDO EDO . F 5 EDO A 1 603 2 EDO EDO . G 5 EDO A 1 604 3 EDO EDO . H 5 EDO A 1 605 4 EDO EDO . I 5 EDO A 1 606 5 EDO EDO . J 5 EDO A 1 607 6 EDO EDO . K 6 HOH A 1 701 183 HOH HOH . K 6 HOH A 2 702 193 HOH HOH . K 6 HOH A 3 703 84 HOH HOH . K 6 HOH A 4 704 177 HOH HOH . K 6 HOH A 5 705 98 HOH HOH . K 6 HOH A 6 706 182 HOH HOH . K 6 HOH A 7 707 47 HOH HOH . K 6 HOH A 8 708 8 HOH HOH . K 6 HOH A 9 709 68 HOH HOH . K 6 HOH A 10 710 87 HOH HOH . K 6 HOH A 11 711 75 HOH HOH . K 6 HOH A 12 712 63 HOH HOH . K 6 HOH A 13 713 95 HOH HOH . K 6 HOH A 14 714 45 HOH HOH . K 6 HOH A 15 715 70 HOH HOH . K 6 HOH A 16 716 149 HOH HOH . K 6 HOH A 17 717 161 HOH HOH . K 6 HOH A 18 718 114 HOH HOH . K 6 HOH A 19 719 4 HOH HOH . K 6 HOH A 20 720 69 HOH HOH . K 6 HOH A 21 721 80 HOH HOH . K 6 HOH A 22 722 10 HOH HOH . K 6 HOH A 23 723 147 HOH HOH . K 6 HOH A 24 724 73 HOH HOH . K 6 HOH A 25 725 42 HOH HOH . K 6 HOH A 26 726 104 HOH HOH . K 6 HOH A 27 727 92 HOH HOH . K 6 HOH A 28 728 115 HOH HOH . K 6 HOH A 29 729 89 HOH HOH . K 6 HOH A 30 730 61 HOH HOH . K 6 HOH A 31 731 48 HOH HOH . K 6 HOH A 32 732 29 HOH HOH . K 6 HOH A 33 733 19 HOH HOH . K 6 HOH A 34 734 128 HOH HOH . K 6 HOH A 35 735 9 HOH HOH . K 6 HOH A 36 736 188 HOH HOH . K 6 HOH A 37 737 121 HOH HOH . K 6 HOH A 38 738 21 HOH HOH . K 6 HOH A 39 739 111 HOH HOH . K 6 HOH A 40 740 81 HOH HOH . K 6 HOH A 41 741 6 HOH HOH . K 6 HOH A 42 742 27 HOH HOH . K 6 HOH A 43 743 136 HOH HOH . K 6 HOH A 44 744 96 HOH HOH . K 6 HOH A 45 745 26 HOH HOH . K 6 HOH A 46 746 1 HOH HOH . K 6 HOH A 47 747 37 HOH HOH . K 6 HOH A 48 748 189 HOH HOH . K 6 HOH A 49 749 127 HOH HOH . K 6 HOH A 50 750 7 HOH HOH . K 6 HOH A 51 751 25 HOH HOH . K 6 HOH A 52 752 82 HOH HOH . K 6 HOH A 53 753 5 HOH HOH . K 6 HOH A 54 754 58 HOH HOH . K 6 HOH A 55 755 23 HOH HOH . K 6 HOH A 56 756 158 HOH HOH . K 6 HOH A 57 757 85 HOH HOH . K 6 HOH A 58 758 56 HOH HOH . K 6 HOH A 59 759 32 HOH HOH . K 6 HOH A 60 760 90 HOH HOH . K 6 HOH A 61 761 43 HOH HOH . K 6 HOH A 62 762 53 HOH HOH . K 6 HOH A 63 763 44 HOH HOH . K 6 HOH A 64 764 16 HOH HOH . K 6 HOH A 65 765 103 HOH HOH . K 6 HOH A 66 766 176 HOH HOH . K 6 HOH A 67 767 11 HOH HOH . K 6 HOH A 68 768 119 HOH HOH . K 6 HOH A 69 769 142 HOH HOH . K 6 HOH A 70 770 22 HOH HOH . K 6 HOH A 71 771 54 HOH HOH . K 6 HOH A 72 772 36 HOH HOH . K 6 HOH A 73 773 2 HOH HOH . K 6 HOH A 74 774 144 HOH HOH . K 6 HOH A 75 775 66 HOH HOH . K 6 HOH A 76 776 28 HOH HOH . K 6 HOH A 77 777 141 HOH HOH . K 6 HOH A 78 778 100 HOH HOH . K 6 HOH A 79 779 108 HOH HOH . K 6 HOH A 80 780 14 HOH HOH . K 6 HOH A 81 781 126 HOH HOH . K 6 HOH A 82 782 74 HOH HOH . K 6 HOH A 83 783 30 HOH HOH . K 6 HOH A 84 784 33 HOH HOH . K 6 HOH A 85 785 35 HOH HOH . K 6 HOH A 86 786 110 HOH HOH . K 6 HOH A 87 787 171 HOH HOH . K 6 HOH A 88 788 39 HOH HOH . K 6 HOH A 89 789 51 HOH HOH . K 6 HOH A 90 790 187 HOH HOH . K 6 HOH A 91 791 124 HOH HOH . K 6 HOH A 92 792 173 HOH HOH . K 6 HOH A 93 793 60 HOH HOH . K 6 HOH A 94 794 3 HOH HOH . K 6 HOH A 95 795 168 HOH HOH . K 6 HOH A 96 796 105 HOH HOH . K 6 HOH A 97 797 120 HOH HOH . K 6 HOH A 98 798 88 HOH HOH . K 6 HOH A 99 799 77 HOH HOH . K 6 HOH A 100 800 112 HOH HOH . K 6 HOH A 101 801 97 HOH HOH . K 6 HOH A 102 802 169 HOH HOH . K 6 HOH A 103 803 91 HOH HOH . K 6 HOH A 104 804 137 HOH HOH . K 6 HOH A 105 805 146 HOH HOH . K 6 HOH A 106 806 151 HOH HOH . K 6 HOH A 107 807 52 HOH HOH . K 6 HOH A 108 808 50 HOH HOH . K 6 HOH A 109 809 106 HOH HOH . K 6 HOH A 110 810 46 HOH HOH . K 6 HOH A 111 811 181 HOH HOH . K 6 HOH A 112 812 64 HOH HOH . K 6 HOH A 113 813 186 HOH HOH . K 6 HOH A 114 814 79 HOH HOH . K 6 HOH A 115 815 67 HOH HOH . K 6 HOH A 116 816 83 HOH HOH . K 6 HOH A 117 817 157 HOH HOH . K 6 HOH A 118 818 184 HOH HOH . K 6 HOH A 119 819 117 HOH HOH . K 6 HOH A 120 820 116 HOH HOH . K 6 HOH A 121 821 154 HOH HOH . K 6 HOH A 122 822 24 HOH HOH . K 6 HOH A 123 823 163 HOH HOH . K 6 HOH A 124 824 93 HOH HOH . K 6 HOH A 125 825 156 HOH HOH . K 6 HOH A 126 826 15 HOH HOH . K 6 HOH A 127 827 113 HOH HOH . K 6 HOH A 128 828 162 HOH HOH . K 6 HOH A 129 829 118 HOH HOH . K 6 HOH A 130 830 99 HOH HOH . K 6 HOH A 131 831 172 HOH HOH . K 6 HOH A 132 832 145 HOH HOH . K 6 HOH A 133 833 57 HOH HOH . K 6 HOH A 134 834 152 HOH HOH . K 6 HOH A 135 835 34 HOH HOH . K 6 HOH A 136 836 12 HOH HOH . K 6 HOH A 137 837 180 HOH HOH . K 6 HOH A 138 838 101 HOH HOH . K 6 HOH A 139 839 76 HOH HOH . K 6 HOH A 140 840 143 HOH HOH . K 6 HOH A 141 841 40 HOH HOH . K 6 HOH A 142 842 20 HOH HOH . K 6 HOH A 143 843 94 HOH HOH . K 6 HOH A 144 844 179 HOH HOH . K 6 HOH A 145 845 135 HOH HOH . K 6 HOH A 146 846 72 HOH HOH . K 6 HOH A 147 847 123 HOH HOH . K 6 HOH A 148 848 165 HOH HOH . K 6 HOH A 149 849 167 HOH HOH . K 6 HOH A 150 850 41 HOH HOH . K 6 HOH A 151 851 131 HOH HOH . K 6 HOH A 152 852 13 HOH HOH . K 6 HOH A 153 853 175 HOH HOH . K 6 HOH A 154 854 18 HOH HOH . K 6 HOH A 155 855 153 HOH HOH . K 6 HOH A 156 856 140 HOH HOH . K 6 HOH A 157 857 190 HOH HOH . K 6 HOH A 158 858 78 HOH HOH . K 6 HOH A 159 859 31 HOH HOH . K 6 HOH A 160 860 55 HOH HOH . K 6 HOH A 161 861 59 HOH HOH . K 6 HOH A 162 862 107 HOH HOH . K 6 HOH A 163 863 71 HOH HOH . K 6 HOH A 164 864 49 HOH HOH . K 6 HOH A 165 865 65 HOH HOH . K 6 HOH A 166 866 109 HOH HOH . K 6 HOH A 167 867 17 HOH HOH . K 6 HOH A 168 868 138 HOH HOH . K 6 HOH A 169 869 164 HOH HOH . K 6 HOH A 170 870 86 HOH HOH . K 6 HOH A 171 871 170 HOH HOH . K 6 HOH A 172 872 129 HOH HOH . K 6 HOH A 173 873 38 HOH HOH . K 6 HOH A 174 874 148 HOH HOH . K 6 HOH A 175 875 102 HOH HOH . K 6 HOH A 176 876 155 HOH HOH . K 6 HOH A 177 877 194 HOH HOH . K 6 HOH A 178 878 185 HOH HOH . K 6 HOH A 179 879 159 HOH HOH . K 6 HOH A 180 880 62 HOH HOH . K 6 HOH A 181 881 134 HOH HOH . K 6 HOH A 182 882 160 HOH HOH . K 6 HOH A 183 883 192 HOH HOH . K 6 HOH A 184 884 122 HOH HOH . K 6 HOH A 185 885 174 HOH HOH . K 6 HOH A 186 886 139 HOH HOH . K 6 HOH A 187 887 133 HOH HOH . K 6 HOH A 188 888 166 HOH HOH . K 6 HOH A 189 889 132 HOH HOH . K 6 HOH A 190 890 191 HOH HOH . K 6 HOH A 191 891 125 HOH HOH . K 6 HOH A 192 892 130 HOH HOH . K 6 HOH A 193 893 178 HOH HOH . K 6 HOH A 194 894 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 5 9.522 9.642 28.332 1 62.63 ? C1 EDO 607 A 1 HETATM 2 O O1 EDO . . . J 5 9.613 9.836 26.916 1 60.37 ? O1 EDO 607 A 1 HETATM 3 C C2 EDO . . . J 5 8.249 10.292 28.868 1 63.68 ? C2 EDO 607 A 1 HETATM 4 O O2 EDO . . . J 5 7.093 9.609 28.376 1 65.31 ? O2 EDO 607 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 4 #