data_2QRC
#
_model_server_result.job_id            i5ZeBjesEWaEW-eULJkl1w 
_model_server_result.datetime_utc      '2024-11-12 23:02:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qrc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1004}' 
#
_entry.id    2QRC 
#
_exptl.entry_id    2QRC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.13 
_cell.angle_gamma         90 
_cell.entry_id            2QRC 
_cell.length_a            168.293 
_cell.length_b            78.087 
_cell.length_c            108.553 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QRC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA hexameric 6 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,K,L,M 1 1 
D,E,F,I,J,N,O,P 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2QRC 
_atom_sites.fract_transf_matrix[1][1]    0.005942 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004028 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012806 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011129 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 AMP G 1 1001 1001 AMP AMP . 
H 5 ADP G 1 1003 1003 ADP ADP . 
I 5 ADP E 1 1002 1002 ADP ADP . 
J 5 ADP E 1 1004 1004 ADP ADP . 
K 6 HOH A 1 5 5 HOH HOH . 
K 6 HOH A 2 9 9 HOH HOH . 
K 6 HOH A 3 18 18 HOH HOH . 
K 6 HOH A 4 27 27 HOH HOH . 
K 6 HOH A 5 34 34 HOH HOH . 
K 6 HOH A 6 36 36 HOH HOH . 
K 6 HOH A 7 39 39 HOH HOH . 
K 6 HOH A 8 63 63 HOH HOH . 
L 6 HOH B 1 17 17 HOH HOH . 
L 6 HOH B 2 21 21 HOH HOH . 
L 6 HOH B 3 32 32 HOH HOH . 
L 6 HOH B 4 38 38 HOH HOH . 
L 6 HOH B 5 46 46 HOH HOH . 
L 6 HOH B 6 54 54 HOH HOH . 
L 6 HOH B 7 60 60 HOH HOH . 
L 6 HOH B 8 64 64 HOH HOH . 
L 6 HOH B 9 71 71 HOH HOH . 
L 6 HOH B 10 75 75 HOH HOH . 
M 6 HOH G 1 1004 1004 HOH HOH . 
M 6 HOH G 2 1005 1005 HOH HOH . 
M 6 HOH G 3 1006 1006 HOH HOH . 
M 6 HOH G 4 1007 1007 HOH HOH . 
M 6 HOH G 5 1008 1008 HOH HOH . 
M 6 HOH G 6 1009 1009 HOH HOH . 
M 6 HOH G 7 1010 1010 HOH HOH . 
M 6 HOH G 8 1011 1011 HOH HOH . 
M 6 HOH G 9 1012 1012 HOH HOH . 
M 6 HOH G 10 1013 1013 HOH HOH . 
M 6 HOH G 11 1014 1014 HOH HOH . 
M 6 HOH G 12 1015 1015 HOH HOH . 
M 6 HOH G 13 1016 1016 HOH HOH . 
M 6 HOH G 14 1017 1017 HOH HOH . 
M 6 HOH G 15 1018 1018 HOH HOH . 
M 6 HOH G 16 1019 1019 HOH HOH . 
M 6 HOH G 17 1020 1020 HOH HOH . 
M 6 HOH G 18 1021 1021 HOH HOH . 
M 6 HOH G 19 1022 1022 HOH HOH . 
N 6 HOH C 1 2 2 HOH HOH . 
N 6 HOH C 2 4 4 HOH HOH . 
N 6 HOH C 3 13 13 HOH HOH . 
N 6 HOH C 4 26 26 HOH HOH . 
N 6 HOH C 5 33 33 HOH HOH . 
N 6 HOH C 6 41 41 HOH HOH . 
N 6 HOH C 7 44 44 HOH HOH . 
N 6 HOH C 8 51 51 HOH HOH . 
N 6 HOH C 9 56 56 HOH HOH . 
N 6 HOH C 10 58 58 HOH HOH . 
N 6 HOH C 11 66 66 HOH HOH . 
O 6 HOH D 1 1 1 HOH HOH . 
O 6 HOH D 2 14 14 HOH HOH . 
O 6 HOH D 3 23 23 HOH HOH . 
O 6 HOH D 4 37 37 HOH HOH . 
O 6 HOH D 5 47 47 HOH HOH . 
O 6 HOH D 6 48 48 HOH HOH . 
O 6 HOH D 7 53 53 HOH HOH . 
O 6 HOH D 8 72 72 HOH HOH . 
O 6 HOH D 9 73 73 HOH HOH . 
O 6 HOH D 10 74 74 HOH HOH . 
O 6 HOH D 11 78 78 HOH HOH . 
P 6 HOH E 1 1005 1005 HOH HOH . 
P 6 HOH E 2 1006 1006 HOH HOH . 
P 6 HOH E 3 1007 1007 HOH HOH . 
P 6 HOH E 4 1008 1008 HOH HOH . 
P 6 HOH E 5 1009 1009 HOH HOH . 
P 6 HOH E 6 1010 1010 HOH HOH . 
P 6 HOH E 7 1011 1011 HOH HOH . 
P 6 HOH E 8 1012 1012 HOH HOH . 
P 6 HOH E 9 1013 1013 HOH HOH . 
P 6 HOH E 10 1014 1014 HOH HOH . 
P 6 HOH E 11 1015 1015 HOH HOH . 
P 6 HOH E 12 1016 1016 HOH HOH . 
P 6 HOH E 13 1017 1017 HOH HOH . 
P 6 HOH E 14 1018 1018 HOH HOH . 
P 6 HOH E 15 1019 1019 HOH HOH . 
P 6 HOH E 16 1020 1020 HOH HOH . 
P 6 HOH E 17 1021 1021 HOH HOH . 
P 6 HOH E 18 1022 1022 HOH HOH . 
P 6 HOH E 19 1023 1023 HOH HOH . 
P 6 HOH E 20 1024 1024 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . J 5 32.902 25.427 32.206 1 80.72 ? PB ADP 1004 E 1 
HETATM 2 O O1B ADP . . . J 5 33.345 24.26 33.086 1 79.19 ? O1B ADP 1004 E 1 
HETATM 3 O O2B ADP . . . J 5 32.482 26.667 32.973 1 81.06 ? O2B ADP 1004 E 1 
HETATM 4 O O3B ADP . . . J 5 33.834 25.687 31.039 1 78.77 ? O3B ADP 1004 E 1 
HETATM 5 P PA ADP . . . J 5 31.243 23.604 30.866 1 79.97 ? PA ADP 1004 E 1 
HETATM 6 O O1A ADP . . . J 5 29.828 23.519 30.342 1 80.66 ? O1A ADP 1004 E 1 
HETATM 7 O O2A ADP . . . J 5 32.418 23.379 29.932 1 81.83 ? O2A ADP 1004 E 1 
HETATM 8 O O3A ADP . . . J 5 31.478 25.038 31.55 1 79.91 ? O3A ADP 1004 E 1 
HETATM 9 O O5' ADP . . . J 5 31.385 22.605 32.133 1 79.39 ? O5' ADP 1004 E 1 
HETATM 10 C C5' ADP . . . J 5 31.011 21.229 32.121 1 76.01 ? C5' ADP 1004 E 1 
HETATM 11 C C4' ADP . . . J 5 32.217 20.366 32.464 1 74 ? C4' ADP 1004 E 1 
HETATM 12 O O4' ADP . . . J 5 32.165 19.175 31.685 1 72.84 ? O4' ADP 1004 E 1 
HETATM 13 C C3' ADP . . . J 5 33.536 21.036 32.119 1 73.85 ? C3' ADP 1004 E 1 
HETATM 14 O O3' ADP . . . J 5 34.491 20.676 33.12 1 75.05 ? O3' ADP 1004 E 1 
HETATM 15 C C2' ADP . . . J 5 33.918 20.487 30.757 1 72.7 ? C2' ADP 1004 E 1 
HETATM 16 O O2' ADP . . . J 5 35.308 20.185 30.632 1 72.03 ? O2' ADP 1004 E 1 
HETATM 17 C C1' ADP . . . J 5 33.12 19.206 30.622 1 71.99 ? C1' ADP 1004 E 1 
HETATM 18 N N9 ADP . . . J 5 32.454 19.184 29.296 1 71.68 ? N9 ADP 1004 E 1 
HETATM 19 C C8 ADP . . . J 5 31.571 20.091 28.831 1 71.59 ? C8 ADP 1004 E 1 
HETATM 20 N N7 ADP . . . J 5 31.154 19.781 27.584 1 71.2 ? N7 ADP 1004 E 1 
HETATM 21 C C5 ADP . . . J 5 31.788 18.649 27.232 1 70.99 ? C5 ADP 1004 E 1 
HETATM 22 C C6 ADP . . . J 5 31.802 17.776 26.035 1 71.38 ? C6 ADP 1004 E 1 
HETATM 23 N N6 ADP . . . J 5 31.028 18.09 24.961 1 71.21 ? N6 ADP 1004 E 1 
HETATM 24 N N1 ADP . . . J 5 32.609 16.678 26.069 1 71.45 ? N1 ADP 1004 E 1 
HETATM 25 C C2 ADP . . . J 5 33.376 16.38 27.144 1 71.36 ? C2 ADP 1004 E 1 
HETATM 26 N N3 ADP . . . J 5 33.409 17.128 28.266 1 70.83 ? N3 ADP 1004 E 1 
HETATM 27 C C4 ADP . . . J 5 32.647 18.254 28.361 1 71 ? C4 ADP 1004 E 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#