data_2QRV # _model_server_result.job_id '_VTiQNEyYu6NMKSFhYXbBg' _model_server_result.datetime_utc '2024-11-23 23:56:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qrv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1}' # _entry.id 2QRV # _exptl.entry_id 2QRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QRV _cell.length_a 401.881 _cell.length_b 401.881 _cell.length_c 49.689 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J 1 1 E,F,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 2QRV _atom_sites.fract_transf_matrix[1][1] 0.002488 _atom_sites.fract_transf_matrix[1][2] 0.001437 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 SAH A 1 1 1 SAH SAH . J 3 SAH D 1 4 4 SAH SAH . K 3 SAH E 1 5 5 SAH SAH . L 3 SAH H 1 8 8 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . I 3 110.886 49.16 2.125 1 67.03 ? N SAH 1 A 1 HETATM 2 C CA SAH . . . I 3 109.657 49.481 1.271 1 61.29 ? CA SAH 1 A 1 HETATM 3 C CB SAH . . . I 3 108.481 48.573 1.36 1 49.67 ? CB SAH 1 A 1 HETATM 4 C CG SAH . . . I 3 108.766 47.111 1.118 1 62.85 ? CG SAH 1 A 1 HETATM 5 S SD SAH . . . I 3 107.177 46.322 1.116 1 74.35 ? SD SAH 1 A 1 HETATM 6 C C SAH . . . I 3 109.272 50.995 1.519 1 59.06 ? C SAH 1 A 1 HETATM 7 O O SAH . . . I 3 109.949 51.713 2.282 1 53.37 ? O SAH 1 A 1 HETATM 8 O OXT SAH . . . I 3 108.246 51.401 0.874 1 38.9 ? OXT SAH 1 A 1 HETATM 9 C C5' SAH . . . I 3 107.378 44.973 -0.001 1 67.15 ? C5' SAH 1 A 1 HETATM 10 C C4' SAH . . . I 3 107.039 45.409 -1.493 1 66.42 ? C4' SAH 1 A 1 HETATM 11 O O4' SAH . . . I 3 107.053 44.221 -2.255 1 66.47 ? O4' SAH 1 A 1 HETATM 12 C C3' SAH . . . I 3 105.672 45.918 -1.766 1 74.03 ? C3' SAH 1 A 1 HETATM 13 O O3' SAH . . . I 3 105.729 47.335 -1.914 1 71.12 ? O3' SAH 1 A 1 HETATM 14 C C2' SAH . . . I 3 105.199 45.061 -3.028 1 78.39 ? C2' SAH 1 A 1 HETATM 15 O O2' SAH . . . I 3 104.451 45.811 -3.979 1 75.53 ? O2' SAH 1 A 1 HETATM 16 C C1' SAH . . . I 3 106.494 44.455 -3.596 1 73.84 ? C1' SAH 1 A 1 HETATM 17 N N9 SAH . . . I 3 106.446 43.277 -4.234 1 77.47 ? N9 SAH 1 A 1 HETATM 18 C C8 SAH . . . I 3 105.837 42.061 -4.02 1 65.54 ? C8 SAH 1 A 1 HETATM 19 N N7 SAH . . . I 3 106.102 41.147 -4.901 1 67.27 ? N7 SAH 1 A 1 HETATM 20 C C5 SAH . . . I 3 106.982 41.77 -5.818 1 75.59 ? C5 SAH 1 A 1 HETATM 21 C C6 SAH . . . I 3 107.672 41.3 -7.007 1 72.7 ? C6 SAH 1 A 1 HETATM 22 N N6 SAH . . . I 3 107.602 40.068 -7.504 1 61.06 ? N6 SAH 1 A 1 HETATM 23 N N1 SAH . . . I 3 108.454 42.221 -7.652 1 84.81 ? N1 SAH 1 A 1 HETATM 24 C C2 SAH . . . I 3 108.608 43.51 -7.218 1 95.84 ? C2 SAH 1 A 1 HETATM 25 N N3 SAH . . . I 3 107.984 43.986 -6.081 1 95.96 ? N3 SAH 1 A 1 HETATM 26 C C4 SAH . . . I 3 107.19 43.073 -5.433 1 83.79 ? C4 SAH 1 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #