data_2QRV # _model_server_result.job_id 5iLJ8HzcGFDodNUCuRrcSg _model_server_result.datetime_utc '2024-11-23 23:21:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qrv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":4}' # _entry.id 2QRV # _exptl.entry_id 2QRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QRV _cell.length_a 401.881 _cell.length_b 401.881 _cell.length_c 49.689 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J 1 1 E,F,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 2QRV _atom_sites.fract_transf_matrix[1][1] 0.002488 _atom_sites.fract_transf_matrix[1][2] 0.001437 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 SAH A 1 1 1 SAH SAH . J 3 SAH D 1 4 4 SAH SAH . K 3 SAH E 1 5 5 SAH SAH . L 3 SAH H 1 8 8 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . J 3 78.699 76.663 2.811 1 71.83 ? N SAH 4 D 1 HETATM 2 C CA SAH . . . J 3 79.151 75.208 2.98 1 64.46 ? CA SAH 4 D 1 HETATM 3 C CB SAH . . . J 3 78.296 74.187 2.317 1 65.38 ? CB SAH 4 D 1 HETATM 4 C CG SAH . . . J 3 76.822 74.196 2.637 1 66.99 ? CG SAH 4 D 1 HETATM 5 S SD SAH . . . J 3 76.29 72.494 2.542 1 73.76 ? SD SAH 4 D 1 HETATM 6 C C SAH . . . J 3 80.642 75.076 2.472 1 60.57 ? C SAH 4 D 1 HETATM 7 O O SAH . . . J 3 81.183 76.095 2.024 1 61.73 ? O SAH 4 D 1 HETATM 8 O OXT SAH . . . J 3 81.222 73.919 2.551 1 60.4 ? OXT SAH 4 D 1 HETATM 9 C C5' SAH . . . J 3 75.074 72.508 3.772 1 52.24 ? C5' SAH 4 D 1 HETATM 10 C C4' SAH . . . J 3 75.589 71.931 5.159 1 52.95 ? C4' SAH 4 D 1 HETATM 11 O O4' SAH . . . J 3 74.273 71.87 5.681 1 47.57 ? O4' SAH 4 D 1 HETATM 12 C C3' SAH . . . J 3 76.053 70.496 5.181 1 59.21 ? C3' SAH 4 D 1 HETATM 13 O O3' SAH . . . J 3 77.488 70.336 5.349 1 55.79 ? O3' SAH 4 D 1 HETATM 14 C C2' SAH . . . J 3 75.094 69.873 6.278 1 52.9 ? C2' SAH 4 D 1 HETATM 15 O O2' SAH . . . J 3 75.778 69.043 7.212 1 45.39 ? O2' SAH 4 D 1 HETATM 16 C C1' SAH . . . J 3 74.396 71.107 6.89 1 57.05 ? C1' SAH 4 D 1 HETATM 17 N N9 SAH . . . J 3 73.19 70.912 7.397 1 65.6 ? N9 SAH 4 D 1 HETATM 18 C C8 SAH . . . J 3 72.044 70.257 7.002 1 59.02 ? C8 SAH 4 D 1 HETATM 19 N N7 SAH . . . J 3 71.054 70.304 7.857 1 48.27 ? N7 SAH 4 D 1 HETATM 20 C C5 SAH . . . J 3 71.559 71.065 8.937 1 52.6 ? C5 SAH 4 D 1 HETATM 21 C C6 SAH . . . J 3 70.97 71.465 10.195 1 51.62 ? C6 SAH 4 D 1 HETATM 22 N N6 SAH . . . J 3 69.722 71.147 10.561 1 40.73 ? N6 SAH 4 D 1 HETATM 23 N N1 SAH . . . J 3 71.768 72.226 11.009 1 58.19 ? N1 SAH 4 D 1 HETATM 24 C C2 SAH . . . J 3 73.052 72.579 10.684 1 72.96 ? C2 SAH 4 D 1 HETATM 25 N N3 SAH . . . J 3 73.655 72.203 9.499 1 69.78 ? N3 SAH 4 D 1 HETATM 26 C C4 SAH . . . J 3 72.856 71.454 8.674 1 63.76 ? C4 SAH 4 D 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #