data_2QRZ # _model_server_result.job_id fcwNp-OuRNqmjmjjv4fKHA _model_server_result.datetime_utc '2024-10-12 14:30:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qrz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3639}' # _entry.id 2QRZ # _exptl.entry_id 2QRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QRZ _cell.length_a 98.5 _cell.length_b 98.5 _cell.length_c 102.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 105 A CYS 105 1_555 A SG CYS 188 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 105 B CYS 105 1_555 B SG CYS 188 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 C MG MG . A MG 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 B OG1 THR 17 B THR 17 1_555 F MG MG . B MG 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 C MG MG . A MG 190 1_555 E O2B GCP . A GCP 3639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc4 C MG MG . A MG 190 1_555 E O1G GCP . A GCP 3639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 F MG MG . B MG 190 1_555 G O1G GCP . B GCP 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc6 C MG MG . A MG 190 1_555 H O HOH . A HOH 3641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc7 C MG MG . A MG 190 1_555 H O HOH . A HOH 3710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc8 C MG MG . A MG 190 1_555 H O HOH . A HOH 3642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc9 F MG MG . B MG 190 1_555 I O HOH . B HOH 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id GCP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2QRZ _atom_sites.fract_transf_matrix[1][1] 0.010152 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 190 3 MG MG . D 3 SO4 A 1 3638 3638 SO4 SO4 . E 4 GCP A 1 3639 1 GCP GTO . F 2 MG B 1 190 4 MG MG . G 4 GCP B 1 191 2 GCP GTO . H 5 HOH A 1 201 36 HOH HOH . H 5 HOH A 2 3640 2 HOH HOH . H 5 HOH A 3 3641 3 HOH HOH . H 5 HOH A 4 3642 4 HOH HOH . H 5 HOH A 5 3643 5 HOH HOH . H 5 HOH A 6 3644 6 HOH HOH . H 5 HOH A 7 3645 7 HOH HOH . H 5 HOH A 8 3646 8 HOH HOH . H 5 HOH A 9 3647 9 HOH HOH . H 5 HOH A 10 3648 10 HOH HOH . H 5 HOH A 11 3649 11 HOH HOH . H 5 HOH A 12 3650 13 HOH HOH . H 5 HOH A 13 3651 14 HOH HOH . H 5 HOH A 14 3652 15 HOH HOH . H 5 HOH A 15 3653 16 HOH HOH . H 5 HOH A 16 3654 18 HOH HOH . H 5 HOH A 17 3655 19 HOH HOH . H 5 HOH A 18 3656 20 HOH HOH . H 5 HOH A 19 3657 21 HOH HOH . H 5 HOH A 20 3658 22 HOH HOH . H 5 HOH A 21 3659 23 HOH HOH . H 5 HOH A 22 3660 28 HOH HOH . H 5 HOH A 23 3661 29 HOH HOH . H 5 HOH A 24 3662 30 HOH HOH . H 5 HOH A 25 3663 31 HOH HOH . H 5 HOH A 26 3664 32 HOH HOH . H 5 HOH A 27 3665 34 HOH HOH . H 5 HOH A 28 3666 37 HOH HOH . H 5 HOH A 29 3667 38 HOH HOH . H 5 HOH A 30 3668 39 HOH HOH . H 5 HOH A 31 3669 40 HOH HOH . H 5 HOH A 32 3670 42 HOH HOH . H 5 HOH A 33 3671 43 HOH HOH . H 5 HOH A 34 3672 44 HOH HOH . H 5 HOH A 35 3673 45 HOH HOH . H 5 HOH A 36 3674 46 HOH HOH . H 5 HOH A 37 3675 47 HOH HOH . H 5 HOH A 38 3676 48 HOH HOH . H 5 HOH A 39 3677 49 HOH HOH . H 5 HOH A 40 3678 50 HOH HOH . H 5 HOH A 41 3679 51 HOH HOH . H 5 HOH A 42 3680 52 HOH HOH . H 5 HOH A 43 3681 56 HOH HOH . H 5 HOH A 44 3682 58 HOH HOH . H 5 HOH A 45 3683 60 HOH HOH . H 5 HOH A 46 3684 61 HOH HOH . H 5 HOH A 47 3685 62 HOH HOH . H 5 HOH A 48 3686 63 HOH HOH . H 5 HOH A 49 3687 64 HOH HOH . H 5 HOH A 50 3688 66 HOH HOH . H 5 HOH A 51 3689 68 HOH HOH . H 5 HOH A 52 3690 69 HOH HOH . H 5 HOH A 53 3691 71 HOH HOH . H 5 HOH A 54 3692 73 HOH HOH . H 5 HOH A 55 3693 75 HOH HOH . H 5 HOH A 56 3694 77 HOH HOH . H 5 HOH A 57 3695 78 HOH HOH . H 5 HOH A 58 3696 80 HOH HOH . H 5 HOH A 59 3697 81 HOH HOH . H 5 HOH A 60 3698 82 HOH HOH . H 5 HOH A 61 3699 85 HOH HOH . H 5 HOH A 62 3700 89 HOH HOH . H 5 HOH A 63 3701 90 HOH HOH . H 5 HOH A 64 3702 94 HOH HOH . H 5 HOH A 65 3703 96 HOH HOH . H 5 HOH A 66 3704 97 HOH HOH . H 5 HOH A 67 3705 99 HOH HOH . H 5 HOH A 68 3706 104 HOH HOH . H 5 HOH A 69 3707 106 HOH HOH . H 5 HOH A 70 3708 107 HOH HOH . H 5 HOH A 71 3709 109 HOH HOH . H 5 HOH A 72 3710 111 HOH HOH . H 5 HOH A 73 3711 114 HOH HOH . H 5 HOH A 74 3712 115 HOH HOH . I 5 HOH B 1 192 1 HOH HOH . I 5 HOH B 2 193 12 HOH HOH . I 5 HOH B 3 194 17 HOH HOH . I 5 HOH B 4 195 24 HOH HOH . I 5 HOH B 5 196 25 HOH HOH . I 5 HOH B 6 197 26 HOH HOH . I 5 HOH B 7 198 27 HOH HOH . I 5 HOH B 8 199 33 HOH HOH . I 5 HOH B 9 200 35 HOH HOH . I 5 HOH B 10 202 41 HOH HOH . I 5 HOH B 11 203 53 HOH HOH . I 5 HOH B 12 204 54 HOH HOH . I 5 HOH B 13 205 55 HOH HOH . I 5 HOH B 14 206 57 HOH HOH . I 5 HOH B 15 207 59 HOH HOH . I 5 HOH B 16 208 65 HOH HOH . I 5 HOH B 17 209 67 HOH HOH . I 5 HOH B 18 210 70 HOH HOH . I 5 HOH B 19 211 72 HOH HOH . I 5 HOH B 20 212 74 HOH HOH . I 5 HOH B 21 213 76 HOH HOH . I 5 HOH B 22 214 79 HOH HOH . I 5 HOH B 23 215 83 HOH HOH . I 5 HOH B 24 216 84 HOH HOH . I 5 HOH B 25 217 86 HOH HOH . I 5 HOH B 26 218 87 HOH HOH . I 5 HOH B 27 219 88 HOH HOH . I 5 HOH B 28 220 91 HOH HOH . I 5 HOH B 29 221 92 HOH HOH . I 5 HOH B 30 222 93 HOH HOH . I 5 HOH B 31 223 95 HOH HOH . I 5 HOH B 32 224 98 HOH HOH . I 5 HOH B 33 225 100 HOH HOH . I 5 HOH B 34 226 101 HOH HOH . I 5 HOH B 35 227 102 HOH HOH . I 5 HOH B 36 228 103 HOH HOH . I 5 HOH B 37 229 105 HOH HOH . I 5 HOH B 38 230 108 HOH HOH . I 5 HOH B 39 231 110 HOH HOH . I 5 HOH B 40 232 112 HOH HOH . I 5 HOH B 41 233 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GCP . . . E 4 66.026 20.526 26.869 1 53.75 ? PG GCP 3639 A 1 HETATM 2 O O1G GCP . . . E 4 65.609 20.849 25.488 1 51.09 ? O1G GCP 3639 A 1 HETATM 3 O O2G GCP . . . E 4 67.437 20.778 27.237 1 56.4 ? O2G GCP 3639 A 1 HETATM 4 O O3G GCP . . . E 4 65.098 21.374 27.874 1 52.96 ? O3G GCP 3639 A 1 HETATM 5 C C3B GCP . . . E 4 65.649 18.827 27.258 1 51.96 ? C3B GCP 3639 A 1 HETATM 6 P PB GCP . . . E 4 64.041 18.296 26.703 1 47.7 ? PB GCP 3639 A 1 HETATM 7 O O1B GCP . . . E 4 63.115 18.451 27.847 1 51.82 ? O1B GCP 3639 A 1 HETATM 8 O O2B GCP . . . E 4 63.696 18.969 25.432 1 47.62 ? O2B GCP 3639 A 1 HETATM 9 O O3A GCP . . . E 4 64.256 16.722 26.439 1 49.21 ? O3A GCP 3639 A 1 HETATM 10 P PA GCP . . . E 4 64.295 16.062 24.97 1 49.26 ? PA GCP 3639 A 1 HETATM 11 O O1A GCP . . . E 4 62.95 16.186 24.364 1 49.64 ? O1A GCP 3639 A 1 HETATM 12 O O2A GCP . . . E 4 65.45 16.606 24.222 1 47.23 ? O2A GCP 3639 A 1 HETATM 13 O O5' GCP . . . E 4 64.58 14.518 25.332 1 49.44 ? O5' GCP 3639 A 1 HETATM 14 C C5' GCP . . . E 4 65.718 14.193 26.132 1 51.11 ? C5' GCP 3639 A 1 HETATM 15 C C4' GCP . . . E 4 66.041 12.698 26.089 1 54.05 ? C4' GCP 3639 A 1 HETATM 16 O O4' GCP . . . E 4 64.87 11.965 26.489 1 53.4 ? O4' GCP 3639 A 1 HETATM 17 C C3' GCP . . . E 4 66.373 12.247 24.666 1 55.2 ? C3' GCP 3639 A 1 HETATM 18 O O3' GCP . . . E 4 67.252 11.12 24.701 1 61.39 ? O3' GCP 3639 A 1 HETATM 19 C C2' GCP . . . E 4 64.997 11.834 24.152 1 54.74 ? C2' GCP 3639 A 1 HETATM 20 O O2' GCP . . . E 4 65.152 10.877 23.102 1 54.73 ? O2' GCP 3639 A 1 HETATM 21 C C1' GCP . . . E 4 64.472 11.119 25.397 1 54.4 ? C1' GCP 3639 A 1 HETATM 22 N N9 GCP . . . E 4 62.999 10.966 25.358 1 56.26 ? N9 GCP 3639 A 1 HETATM 23 C C8 GCP . . . E 4 62.113 11.939 25.161 1 56.1 ? C8 GCP 3639 A 1 HETATM 24 N N7 GCP . . . E 4 60.878 11.45 25.248 1 55.68 ? N7 GCP 3639 A 1 HETATM 25 C C5 GCP . . . E 4 60.97 10.149 25.505 1 56.64 ? C5 GCP 3639 A 1 HETATM 26 C C6 GCP . . . E 4 60.017 9.157 25.711 1 55.15 ? C6 GCP 3639 A 1 HETATM 27 O O6 GCP . . . E 4 58.692 9.455 25.648 1 56.59 ? O6 GCP 3639 A 1 HETATM 28 N N1 GCP . . . E 4 60.421 7.844 25.983 1 56.61 ? N1 GCP 3639 A 1 HETATM 29 C C2 GCP . . . E 4 61.782 7.521 26.047 1 56.93 ? C2 GCP 3639 A 1 HETATM 30 N N2 GCP . . . E 4 62.162 6.276 26.311 1 59.73 ? N2 GCP 3639 A 1 HETATM 31 N N3 GCP . . . E 4 62.738 8.526 25.836 1 57.38 ? N3 GCP 3639 A 1 HETATM 32 C C4 GCP . . . E 4 62.323 9.835 25.57 1 57.22 ? C4 GCP 3639 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 32 #