data_2QSY # _model_server_result.job_id yyR6XCs1gN_hyH-4QQ5MRA _model_server_result.datetime_utc '2024-10-30 14:18:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 2QSY # _exptl.entry_id 2QSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QSY _cell.length_a 54.453 _cell.length_b 142.07 _cell.length_c 62.263 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 80 A ASN 62 1_555 A N MSE 81 A MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 81 A MSE 63 1_555 A N GLU 82 A GLU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C LYS 83 A LYS 65 1_555 A N MSE 84 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C MSE 84 A MSE 66 1_555 A N MSE 85 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 A C MSE 85 A MSE 67 1_555 A N SER 86 A SER 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C TRP 91 A TRP 73 1_555 A N MSE 92 A MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C MSE 92 A MSE 74 1_555 A N GLU 93 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C PRO 167 A PRO 149 1_555 A N MSE 168 A MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 168 A MSE 150 1_555 A N TYR 169 A TYR 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 A C GLU 175 A GLU 157 1_555 A N MSE 176 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale11 A C MSE 176 A MSE 158 1_555 A N GLN 177 A GLN 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OG1 THR 35 A THR 17 1_555 B MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc2 C O2B ADP . A ADP 1101 1_555 B MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 B MG MG . A MG 1102 1_555 I O HOH . A HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 B MG MG . A MG 1102 1_555 I O HOH . A HOH 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 B MG MG . A MG 1102 1_555 I O HOH . A HOH 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc6 B MG MG . A MG 1102 1_555 I O HOH . A HOH 1173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2QSY _atom_sites.fract_transf_matrix[1][1] 0.01836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1102 1102 MG MG . C 3 ADP A 1 1101 1101 ADP ADP . D 4 UNX A 1 1103 1 UNX UNX . E 4 UNX A 1 1104 2 UNX UNX . F 4 UNX A 1 1105 3 UNX UNX . G 4 UNX A 1 1106 4 UNX UNX . H 4 UNX A 1 1107 5 UNX UNX . I 5 HOH A 1 1108 1 HOH HOH . I 5 HOH A 2 1109 2 HOH HOH . I 5 HOH A 3 1110 3 HOH HOH . I 5 HOH A 4 1111 4 HOH HOH . I 5 HOH A 5 1112 5 HOH HOH . I 5 HOH A 6 1113 6 HOH HOH . I 5 HOH A 7 1114 7 HOH HOH . I 5 HOH A 8 1115 8 HOH HOH . I 5 HOH A 9 1116 9 HOH HOH . I 5 HOH A 10 1117 10 HOH HOH . I 5 HOH A 11 1118 11 HOH HOH . I 5 HOH A 12 1119 12 HOH HOH . I 5 HOH A 13 1120 13 HOH HOH . I 5 HOH A 14 1121 14 HOH HOH . I 5 HOH A 15 1122 15 HOH HOH . I 5 HOH A 16 1123 16 HOH HOH . I 5 HOH A 17 1124 17 HOH HOH . I 5 HOH A 18 1125 18 HOH HOH . I 5 HOH A 19 1126 19 HOH HOH . I 5 HOH A 20 1127 20 HOH HOH . I 5 HOH A 21 1128 21 HOH HOH . I 5 HOH A 22 1129 22 HOH HOH . I 5 HOH A 23 1130 23 HOH HOH . I 5 HOH A 24 1131 24 HOH HOH . I 5 HOH A 25 1132 25 HOH HOH . I 5 HOH A 26 1133 26 HOH HOH . I 5 HOH A 27 1134 30 HOH HOH . I 5 HOH A 28 1135 31 HOH HOH . I 5 HOH A 29 1136 32 HOH HOH . I 5 HOH A 30 1137 33 HOH HOH . I 5 HOH A 31 1138 34 HOH HOH . I 5 HOH A 32 1139 35 HOH HOH . I 5 HOH A 33 1140 37 HOH HOH . I 5 HOH A 34 1141 38 HOH HOH . I 5 HOH A 35 1142 39 HOH HOH . I 5 HOH A 36 1143 41 HOH HOH . I 5 HOH A 37 1144 42 HOH HOH . I 5 HOH A 38 1145 43 HOH HOH . I 5 HOH A 39 1146 44 HOH HOH . I 5 HOH A 40 1147 45 HOH HOH . I 5 HOH A 41 1148 46 HOH HOH . I 5 HOH A 42 1149 47 HOH HOH . I 5 HOH A 43 1150 48 HOH HOH . I 5 HOH A 44 1151 49 HOH HOH . I 5 HOH A 45 1152 50 HOH HOH . I 5 HOH A 46 1153 51 HOH HOH . I 5 HOH A 47 1154 52 HOH HOH . I 5 HOH A 48 1155 53 HOH HOH . I 5 HOH A 49 1156 54 HOH HOH . I 5 HOH A 50 1157 55 HOH HOH . I 5 HOH A 51 1158 56 HOH HOH . I 5 HOH A 52 1159 57 HOH HOH . I 5 HOH A 53 1160 58 HOH HOH . I 5 HOH A 54 1161 59 HOH HOH . I 5 HOH A 55 1162 61 HOH HOH . I 5 HOH A 56 1163 62 HOH HOH . I 5 HOH A 57 1164 63 HOH HOH . I 5 HOH A 58 1165 64 HOH HOH . I 5 HOH A 59 1166 65 HOH HOH . I 5 HOH A 60 1167 66 HOH HOH . I 5 HOH A 61 1168 67 HOH HOH . I 5 HOH A 62 1169 68 HOH HOH . I 5 HOH A 63 1170 70 HOH HOH . I 5 HOH A 64 1171 71 HOH HOH . I 5 HOH A 65 1172 72 HOH HOH . I 5 HOH A 66 1173 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 16.608 49.76 5.431 1 17.77 ? PB ADP 1101 A 1 HETATM 2 O O1B ADP . . . C 3 15.155 49.538 5.173 1 14.13 ? O1B ADP 1101 A 1 HETATM 3 O O2B ADP . . . C 3 17.517 48.674 4.984 1 16.6 ? O2B ADP 1101 A 1 HETATM 4 O O3B ADP . . . C 3 17.046 51.118 4.971 1 17.95 ? O3B ADP 1101 A 1 HETATM 5 P PA ADP . . . C 3 17.902 49.226 7.972 1 18.84 ? PA ADP 1101 A 1 HETATM 6 O O1A ADP . . . C 3 19.21 49.853 7.491 1 19.38 ? O1A ADP 1101 A 1 HETATM 7 O O2A ADP . . . C 3 17.802 47.766 8.33 1 18.21 ? O2A ADP 1101 A 1 HETATM 8 O O3A ADP . . . C 3 16.732 49.781 7.015 1 15.99 ? O3A ADP 1101 A 1 HETATM 9 O O5' ADP . . . C 3 17.483 50.041 9.31 1 20.72 ? O5' ADP 1101 A 1 HETATM 10 C C5' ADP . . . C 3 17.2 51.454 9.276 1 20.57 ? C5' ADP 1101 A 1 HETATM 11 C C4' ADP . . . C 3 17.392 52.046 10.665 1 24.79 ? C4' ADP 1101 A 1 HETATM 12 O O4' ADP . . . C 3 16.388 51.558 11.546 1 23.62 ? O4' ADP 1101 A 1 HETATM 13 C C3' ADP . . . C 3 18.728 51.648 11.311 1 26.73 ? C3' ADP 1101 A 1 HETATM 14 O O3' ADP . . . C 3 19.2 52.714 12.157 1 28.47 ? O3' ADP 1101 A 1 HETATM 15 C C2' ADP . . . C 3 18.407 50.404 12.12 1 27.7 ? C2' ADP 1101 A 1 HETATM 16 O O2' ADP . . . C 3 19.268 50.148 13.245 1 25.52 ? O2' ADP 1101 A 1 HETATM 17 C C1' ADP . . . C 3 16.967 50.677 12.533 1 24.84 ? C1' ADP 1101 A 1 HETATM 18 N N9 ADP . . . C 3 16.109 49.458 12.652 1 26.77 ? N9 ADP 1101 A 1 HETATM 19 C C8 ADP . . . C 3 16.181 48.267 11.988 1 25.14 ? C8 ADP 1101 A 1 HETATM 20 N N7 ADP . . . C 3 15.199 47.433 12.411 1 25.72 ? N7 ADP 1101 A 1 HETATM 21 C C5 ADP . . . C 3 14.488 48.101 13.356 1 25.52 ? C5 ADP 1101 A 1 HETATM 22 C C6 ADP . . . C 3 13.319 47.827 14.222 1 24.17 ? C6 ADP 1101 A 1 HETATM 23 N N6 ADP . . . C 3 12.696 46.648 14.135 1 25.07 ? N6 ADP 1101 A 1 HETATM 24 N N1 ADP . . . C 3 12.901 48.782 15.098 1 23.75 ? N1 ADP 1101 A 1 HETATM 25 C C2 ADP . . . C 3 13.514 49.976 15.176 1 25.01 ? C2 ADP 1101 A 1 HETATM 26 N N3 ADP . . . C 3 14.586 50.289 14.418 1 23.77 ? N3 ADP 1101 A 1 HETATM 27 C C4 ADP . . . C 3 15.096 49.411 13.513 1 24.83 ? C4 ADP 1101 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #