data_2QSZ # _model_server_result.job_id XYpsYp0OpDbgtOEk5Z67dg _model_server_result.datetime_utc '2024-11-23 05:19:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qsz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 2QSZ # _exptl.entry_id 2QSZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.227 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QSZ _cell.length_a 55.921 _cell.length_b 142.342 _cell.length_c 62.434 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QSZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 80 A ASN 62 1_555 A N MSE 81 A MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 81 A MSE 63 1_555 A N GLU 82 A GLU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C LYS 83 A LYS 65 1_555 A N MSE 84 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C MSE 84 A MSE 66 1_555 A N MSE 85 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C MSE 85 A MSE 67 1_555 A N SER 86 A SER 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C TRP 91 A TRP 73 1_555 A N MSE 92 A MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale7 A C MSE 92 A MSE 74 1_555 A N GLU 93 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C PRO 167 A PRO 149 1_555 A N MSE 168 A MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 168 A MSE 150 1_555 A N TYR 169 A TYR 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C GLU 175 A GLU 157 1_555 A N MSE 176 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C MSE 176 A MSE 158 1_555 A N GLN 177 A GLN 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C11 H16 N2 O8 P 1' _chem_comp.formula_weight 335.227 _chem_comp.id NMN _chem_comp.mon_nstd_flag . _chem_comp.name 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NICOTINAMIDE MONONUCLEOTIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P NMN doub 237 n n P O1P NMN sing 238 n n P O2P NMN sing 239 n n P O5R NMN sing 240 n n O1P H1PO NMN sing 241 n n O2P H2PO NMN sing 242 n n O5R C5R NMN sing 243 n n C5R C4R NMN sing 244 n n C5R H5R1 NMN sing 245 n n C5R H5R2 NMN sing 246 n n C4R O4R NMN sing 247 n n C4R C3R NMN sing 248 n n C4R H4RC NMN sing 249 n n O4R C1R NMN sing 250 n n C3R O3R NMN sing 251 n n C3R C2R NMN sing 252 n n C3R H3RC NMN sing 253 n n O3R H3RO NMN sing 254 n n C2R O2R NMN sing 255 n n C2R C1R NMN sing 256 n n C2R H2RC NMN sing 257 n n O2R H2RO NMN sing 258 n n C1R N1 NMN sing 259 n n C1R H1RC NMN sing 260 n n N1 C2 NMN doub 261 n y N1 C6 NMN sing 262 n y C2 C3 NMN sing 263 n y C2 HC2 NMN sing 264 n n C3 C7 NMN sing 265 n n C3 C4 NMN doub 266 n y C7 O7 NMN doub 267 n n C7 N7 NMN sing 268 n n N7 HN71 NMN sing 269 n n N7 HN72 NMN sing 270 n n C4 C5 NMN sing 271 n y C4 HC4 NMN sing 272 n n C5 C6 NMN doub 273 n y C5 HC5 NMN sing 274 n n C6 HC6 NMN sing 275 n n # _atom_sites.entry_id 2QSZ _atom_sites.fract_transf_matrix[1][1] 0.01788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 203 203 PO4 PO4 . C 3 CL A 1 204 1 CL CL . D 4 NMN A 1 201 201 NMN NMN . E 5 UNX A 1 1001 1001 UNX UNX . F 5 UNX A 1 1002 1002 UNX UNX . G 5 UNX A 1 1003 1003 UNX UNX . H 5 UNX A 1 1004 1004 UNX UNX . I 5 UNX A 1 1005 1005 UNX UNX . J 5 UNX A 1 1006 1006 UNX UNX . K 5 UNX A 1 1007 1007 UNX UNX . L 6 HOH A 1 301 301 HOH HOH . L 6 HOH A 2 302 302 HOH HOH . L 6 HOH A 3 303 303 HOH HOH . L 6 HOH A 4 304 304 HOH HOH . L 6 HOH A 5 305 305 HOH HOH . L 6 HOH A 6 306 306 HOH HOH . L 6 HOH A 7 307 307 HOH HOH . L 6 HOH A 8 308 308 HOH HOH . L 6 HOH A 9 309 309 HOH HOH . L 6 HOH A 10 310 310 HOH HOH . L 6 HOH A 11 311 311 HOH HOH . L 6 HOH A 12 312 312 HOH HOH . L 6 HOH A 13 313 313 HOH HOH . L 6 HOH A 14 314 314 HOH HOH . L 6 HOH A 15 315 315 HOH HOH . L 6 HOH A 16 316 316 HOH HOH . L 6 HOH A 17 317 317 HOH HOH . L 6 HOH A 18 318 318 HOH HOH . L 6 HOH A 19 319 319 HOH HOH . L 6 HOH A 20 320 320 HOH HOH . L 6 HOH A 21 321 321 HOH HOH . L 6 HOH A 22 322 322 HOH HOH . L 6 HOH A 23 323 323 HOH HOH . L 6 HOH A 24 324 324 HOH HOH . L 6 HOH A 25 325 325 HOH HOH . L 6 HOH A 26 326 326 HOH HOH . L 6 HOH A 27 327 327 HOH HOH . L 6 HOH A 28 328 328 HOH HOH . L 6 HOH A 29 329 329 HOH HOH . L 6 HOH A 30 330 330 HOH HOH . L 6 HOH A 31 331 331 HOH HOH . L 6 HOH A 32 332 332 HOH HOH . L 6 HOH A 33 333 333 HOH HOH . L 6 HOH A 34 334 334 HOH HOH . L 6 HOH A 35 335 335 HOH HOH . L 6 HOH A 36 336 336 HOH HOH . L 6 HOH A 37 337 337 HOH HOH . L 6 HOH A 38 338 338 HOH HOH . L 6 HOH A 39 339 339 HOH HOH . L 6 HOH A 40 340 340 HOH HOH . L 6 HOH A 41 341 341 HOH HOH . L 6 HOH A 42 342 342 HOH HOH . L 6 HOH A 43 343 343 HOH HOH . L 6 HOH A 44 344 344 HOH HOH . L 6 HOH A 45 345 345 HOH HOH . L 6 HOH A 46 346 346 HOH HOH . L 6 HOH A 47 347 347 HOH HOH . L 6 HOH A 48 348 348 HOH HOH . L 6 HOH A 49 349 349 HOH HOH . L 6 HOH A 50 350 350 HOH HOH . L 6 HOH A 51 351 351 HOH HOH . L 6 HOH A 52 352 352 HOH HOH . L 6 HOH A 53 353 353 HOH HOH . L 6 HOH A 54 354 354 HOH HOH . L 6 HOH A 55 355 355 HOH HOH . L 6 HOH A 56 356 356 HOH HOH . L 6 HOH A 57 357 357 HOH HOH . L 6 HOH A 58 358 358 HOH HOH . L 6 HOH A 59 359 359 HOH HOH . L 6 HOH A 60 360 360 HOH HOH . L 6 HOH A 61 361 361 HOH HOH . L 6 HOH A 62 362 362 HOH HOH . L 6 HOH A 63 363 363 HOH HOH . L 6 HOH A 64 364 364 HOH HOH . L 6 HOH A 65 365 365 HOH HOH . L 6 HOH A 66 366 366 HOH HOH . L 6 HOH A 67 367 367 HOH HOH . L 6 HOH A 68 368 368 HOH HOH . L 6 HOH A 69 369 369 HOH HOH . L 6 HOH A 70 370 370 HOH HOH . L 6 HOH A 71 371 371 HOH HOH . L 6 HOH A 72 372 372 HOH HOH . L 6 HOH A 73 373 373 HOH HOH . L 6 HOH A 74 374 374 HOH HOH . L 6 HOH A 75 375 375 HOH HOH . L 6 HOH A 76 376 376 HOH HOH . L 6 HOH A 77 377 377 HOH HOH . L 6 HOH A 78 378 378 HOH HOH . L 6 HOH A 79 379 379 HOH HOH . L 6 HOH A 80 380 380 HOH HOH . L 6 HOH A 81 381 381 HOH HOH . L 6 HOH A 82 382 382 HOH HOH . L 6 HOH A 83 383 383 HOH HOH . L 6 HOH A 84 384 384 HOH HOH . L 6 HOH A 85 385 385 HOH HOH . L 6 HOH A 86 386 386 HOH HOH . L 6 HOH A 87 387 387 HOH HOH . L 6 HOH A 88 388 388 HOH HOH . L 6 HOH A 89 389 389 HOH HOH . L 6 HOH A 90 390 390 HOH HOH . L 6 HOH A 91 391 391 HOH HOH . L 6 HOH A 92 392 392 HOH HOH . L 6 HOH A 93 393 393 HOH HOH . L 6 HOH A 94 394 394 HOH HOH . L 6 HOH A 95 395 395 HOH HOH . L 6 HOH A 96 396 396 HOH HOH . L 6 HOH A 97 397 397 HOH HOH . L 6 HOH A 98 398 398 HOH HOH . L 6 HOH A 99 399 399 HOH HOH . L 6 HOH A 100 400 400 HOH HOH . L 6 HOH A 101 401 401 HOH HOH . L 6 HOH A 102 402 402 HOH HOH . L 6 HOH A 103 403 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P NMN . . . D 4 9.185 -19.894 -3.254 1 22.03 ? O3P NMN 201 A 1 HETATM 2 P P NMN . . . D 4 10.212 -19.093 -2.578 1 21.17 ? P NMN 201 A 1 HETATM 3 O O1P NMN . . . D 4 10.649 -17.795 -3.371 1 20.62 ? O1P NMN 201 A 1 HETATM 4 O O2P NMN . . . D 4 11.545 -19.907 -2.279 1 20.14 ? O2P NMN 201 A 1 HETATM 5 O O5R NMN . . . D 4 9.619 -18.625 -1.106 1 22.13 ? O5R NMN 201 A 1 HETATM 6 C C5R NMN . . . D 4 10.44 -17.934 -0.174 1 23.11 ? C5R NMN 201 A 1 HETATM 7 C C4R NMN . . . D 4 10.137 -16.435 -0.335 1 23.78 ? C4R NMN 201 A 1 HETATM 8 O O4R NMN . . . D 4 8.744 -16.18 -0.06 1 24.51 ? O4R NMN 201 A 1 HETATM 9 C C3R NMN . . . D 4 10.936 -15.611 0.685 1 23.43 ? C3R NMN 201 A 1 HETATM 10 O O3R NMN . . . D 4 12.095 -15.107 -0.006 1 20.27 ? O3R NMN 201 A 1 HETATM 11 C C2R NMN . . . D 4 9.918 -14.531 1.164 1 24.74 ? C2R NMN 201 A 1 HETATM 12 O O2R NMN . . . D 4 10.366 -13.187 0.948 1 23.77 ? O2R NMN 201 A 1 HETATM 13 C C1R NMN . . . D 4 8.679 -14.777 0.283 1 25.28 ? C1R NMN 201 A 1 HETATM 14 N N1 NMN . . . D 4 7.358 -14.443 0.872 1 27.13 ? N1 NMN 201 A 1 HETATM 15 C C2 NMN . . . D 4 6.437 -15.453 1.12 1 25.07 ? C2 NMN 201 A 1 HETATM 16 C C3 NMN . . . D 4 5.187 -15.175 1.666 1 27.06 ? C3 NMN 201 A 1 HETATM 17 C C7 NMN . . . D 4 4.185 -16.332 1.942 1 28.64 ? C7 NMN 201 A 1 HETATM 18 O O7 NMN . . . D 4 3.235 -16.186 2.721 1 32.03 ? O7 NMN 201 A 1 HETATM 19 N N7 NMN . . . D 4 4.403 -17.464 1.285 1 26.32 ? N7 NMN 201 A 1 HETATM 20 C C4 NMN . . . D 4 4.847 -13.845 1.971 1 26.29 ? C4 NMN 201 A 1 HETATM 21 C C5 NMN . . . D 4 5.751 -12.823 1.714 1 27.56 ? C5 NMN 201 A 1 HETATM 22 C C6 NMN . . . D 4 7.003 -13.11 1.169 1 29.05 ? C6 NMN 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #