data_2QT0 # _model_server_result.job_id vBzPjR46Wmyt2Iv7KjTQPg _model_server_result.datetime_utc '2024-11-23 05:24:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 2QT0 # _exptl.entry_id 2QT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QT0 _cell.length_a 97.025 _cell.length_b 97.025 _cell.length_c 44.801 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 80 A ASN 62 1_555 A N MSE 81 A MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 81 A MSE 63 1_555 A N GLU 82 A GLU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C LYS 83 A LYS 65 1_555 A N MSE 84 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 84 A MSE 66 1_555 A N MSE 85 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 85 A MSE 67 1_555 A N SER 86 A SER 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C TRP 91 A TRP 73 1_555 A N MSE 92 A MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 92 A MSE 74 1_555 A N GLU 93 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale8 A C PRO 167 A PRO 149 1_555 A N MSE 168 A MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C MSE 168 A MSE 150 1_555 A N TYR 169 A TYR 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale10 A C GLU 175 A GLU 157 1_555 A N MSE 176 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C MSE 176 A MSE 158 1_555 A N GLN 177 A GLN 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A OG1 THR 35 A THR 17 1_555 B MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc2 A OD2 ASP 54 A ASP 36 1_555 B MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc3 E O HOH . A HOH 231 1_555 B MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 E O HOH . A HOH 232 1_555 B MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 B MG MG . A MG 1001 1_555 C O1G ANP . A ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 B MG MG . A MG 1001 1_555 C O2B ANP . A ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2QT0 _atom_sites.fract_transf_matrix[1][1] 0.01031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1001 1001 MG MG . C 3 ANP A 1 1102 1102 ANP ANP . D 4 NNR A 1 1103 1103 NNR NNR . E 5 HOH A 1 201 201 HOH HOH . E 5 HOH A 2 202 202 HOH HOH . E 5 HOH A 3 203 203 HOH HOH . E 5 HOH A 4 204 204 HOH HOH . E 5 HOH A 5 205 205 HOH HOH . E 5 HOH A 6 206 206 HOH HOH . E 5 HOH A 7 207 207 HOH HOH . E 5 HOH A 8 208 208 HOH HOH . E 5 HOH A 9 209 209 HOH HOH . E 5 HOH A 10 210 210 HOH HOH . E 5 HOH A 11 211 211 HOH HOH . E 5 HOH A 12 212 212 HOH HOH . E 5 HOH A 13 213 213 HOH HOH . E 5 HOH A 14 214 214 HOH HOH . E 5 HOH A 15 215 215 HOH HOH . E 5 HOH A 16 216 216 HOH HOH . E 5 HOH A 17 217 217 HOH HOH . E 5 HOH A 18 218 218 HOH HOH . E 5 HOH A 19 219 219 HOH HOH . E 5 HOH A 20 220 220 HOH HOH . E 5 HOH A 21 221 221 HOH HOH . E 5 HOH A 22 222 222 HOH HOH . E 5 HOH A 23 223 223 HOH HOH . E 5 HOH A 24 224 224 HOH HOH . E 5 HOH A 25 225 225 HOH HOH . E 5 HOH A 26 226 226 HOH HOH . E 5 HOH A 27 227 227 HOH HOH . E 5 HOH A 28 228 228 HOH HOH . E 5 HOH A 29 229 229 HOH HOH . E 5 HOH A 30 230 230 HOH HOH . E 5 HOH A 31 231 231 HOH HOH . E 5 HOH A 32 232 232 HOH HOH . E 5 HOH A 33 233 233 HOH HOH . E 5 HOH A 34 234 234 HOH HOH . E 5 HOH A 35 235 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -23.622 3.313 -8.56 1 28.22 ? PG ANP 1102 A 1 HETATM 2 O O1G ANP . . . C 3 -22.69 3.762 -7.43 1 22.14 ? O1G ANP 1102 A 1 HETATM 3 O O2G ANP . . . C 3 -22.891 3.596 -9.894 1 27.18 ? O2G ANP 1102 A 1 HETATM 4 O O3G ANP . . . C 3 -23.925 1.848 -8.451 1 27.53 ? O3G ANP 1102 A 1 HETATM 5 P PB ANP . . . C 3 -25.774 4.683 -7.207 1 26.93 ? PB ANP 1102 A 1 HETATM 6 O O1B ANP . . . C 3 -26.562 3.612 -6.698 1 25.48 ? O1B ANP 1102 A 1 HETATM 7 O O2B ANP . . . C 3 -24.866 5.449 -6.273 1 22.03 ? O2B ANP 1102 A 1 HETATM 8 N N3B ANP . . . C 3 -24.943 4.303 -8.595 1 25.81 ? N3B ANP 1102 A 1 HETATM 9 P PA ANP . . . C 3 -26.717 7.266 -8.064 1 28.84 ? PA ANP 1102 A 1 HETATM 10 O O1A ANP . . . C 3 -25.388 7.411 -8.661 1 26.93 ? O1A ANP 1102 A 1 HETATM 11 O O2A ANP . . . C 3 -27.153 8.043 -6.862 1 25.42 ? O2A ANP 1102 A 1 HETATM 12 O O3A ANP . . . C 3 -26.893 5.728 -7.831 1 26.44 ? O3A ANP 1102 A 1 HETATM 13 O O5' ANP . . . C 3 -27.843 7.516 -9.203 1 30.55 ? O5' ANP 1102 A 1 HETATM 14 C C5' ANP . . . C 3 -27.638 6.74 -10.428 1 36.41 ? C5' ANP 1102 A 1 HETATM 15 C C4' ANP . . . C 3 -28.555 7.183 -11.559 1 35.42 ? C4' ANP 1102 A 1 HETATM 16 O O4' ANP . . . C 3 -29.947 7.006 -11.11 1 37.31 ? O4' ANP 1102 A 1 HETATM 17 C C3' ANP . . . C 3 -28.377 8.649 -11.851 1 38.83 ? C3' ANP 1102 A 1 HETATM 18 O O3' ANP . . . C 3 -28.84 8.886 -13.183 1 42.73 ? O3' ANP 1102 A 1 HETATM 19 C C2' ANP . . . C 3 -29.349 9.29 -10.882 1 40 ? C2' ANP 1102 A 1 HETATM 20 O O2' ANP . . . C 3 -29.744 10.576 -11.375 1 41.89 ? O2' ANP 1102 A 1 HETATM 21 C C1' ANP . . . C 3 -30.534 8.323 -10.962 1 37.83 ? C1' ANP 1102 A 1 HETATM 22 N N9 ANP . . . C 3 -31.325 8.236 -9.721 1 38.14 ? N9 ANP 1102 A 1 HETATM 23 C C8 ANP . . . C 3 -30.846 8.246 -8.459 1 36.92 ? C8 ANP 1102 A 1 HETATM 24 N N7 ANP . . . C 3 -31.867 8.139 -7.594 1 36.98 ? N7 ANP 1102 A 1 HETATM 25 C C5 ANP . . . C 3 -33 8.053 -8.328 1 37.22 ? C5 ANP 1102 A 1 HETATM 26 C C6 ANP . . . C 3 -34.358 7.933 -7.99 1 37.21 ? C6 ANP 1102 A 1 HETATM 27 N N6 ANP . . . C 3 -34.732 7.867 -6.705 1 35.09 ? N6 ANP 1102 A 1 HETATM 28 N N1 ANP . . . C 3 -35.27 7.886 -8.985 1 37.16 ? N1 ANP 1102 A 1 HETATM 29 C C2 ANP . . . C 3 -34.895 7.947 -10.285 1 38.67 ? C2 ANP 1102 A 1 HETATM 30 N N3 ANP . . . C 3 -33.598 8.06 -10.656 1 36.37 ? N3 ANP 1102 A 1 HETATM 31 C C4 ANP . . . C 3 -32.648 8.119 -9.681 1 37.34 ? C4 ANP 1102 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #