data_2QT1
#
_model_server_result.job_id            E3JxPho6PNIhMxe8cyo8EA 
_model_server_result.datetime_utc      '2024-10-30 14:18:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qt1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    2QT1 
#
_exptl.entry_id    2QT1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              255.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Nicotinamide riboside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2QT1 
_cell.length_a            55.529 
_cell.length_b            141.906 
_cell.length_c            62.062 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QT1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 80 A ASN 62 1_555 A N MSE 81 A MSE 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C MSE 81 A MSE 63 1_555 A N GLU 82 A GLU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 A C LYS 83 A LYS 65 1_555 A N MSE 84 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale4 A C MSE 84 A MSE 66 1_555 A N MSE 85 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 A C MSE 85 A MSE 67 1_555 A N SER 86 A SER 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale6 A C TRP 91 A TRP 73 1_555 A N MSE 92 A MSE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C MSE 92 A MSE 74 1_555 A N GLU 93 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale8 A C PRO 167 A PRO 149 1_555 A N MSE 168 A MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale9 A C MSE 168 A MSE 150 1_555 A N TYR 169 A TYR 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale10 A C GLU 175 A GLU 157 1_555 A N MSE 176 A MSE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale11 A C MSE 176 A MSE 158 1_555 A N GLN 177 A GLN 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
#
_chem_comp.formula           'C11 H15 N2 O5 1' 
_chem_comp.formula_weight    255.247 
_chem_comp.id                NNR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Nicotinamide riboside' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-(aminocarbonyl)-1-beta-D-ribofuranosylpyridinium 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C6 NNR doub 237 n y 
C5 C4 NNR sing 238 n y 
C6 N1 NNR sing 239 n y 
C4 C3 NNR doub 240 n y 
O2R C2R NNR sing 241 n n 
N1 C1R NNR sing 242 n n 
N1 C2 NNR doub 243 n y 
C3 C2 NNR sing 244 n y 
C3 C7 NNR sing 245 n n 
C1R C2R NNR sing 246 n n 
C1R O4R NNR sing 247 n n 
C2R C3R NNR sing 248 n n 
C7 O7 NNR doub 249 n n 
C7 N7 NNR sing 250 n n 
O3R C3R NNR sing 251 n n 
O4R C4R NNR sing 252 n n 
C3R C4R NNR sing 253 n n 
C4R C5R NNR sing 254 n n 
C5R O5R NNR sing 255 n n 
O2R HO2R NNR sing 256 n n 
C2R H2R NNR sing 257 n n 
C3R H3R NNR sing 258 n n 
O3R HO3R NNR sing 259 n n 
C4R H4R NNR sing 260 n n 
C5R H5R1 NNR sing 261 n n 
C5R H5R2 NNR sing 262 n n 
O5R HO5R NNR sing 263 n n 
C1R H1R NNR sing 264 n n 
C2 H2 NNR sing 265 n n 
C6 H6 NNR sing 266 n n 
C5 H5 NNR sing 267 n n 
C4 H4 NNR sing 268 n n 
N7 HN71 NNR sing 269 n n 
N7 HN72 NNR sing 270 n n 
#
_atom_sites.entry_id                     2QT1 
_atom_sites.fract_transf_matrix[1][1]    0.01801 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00705 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 201 201 PO4 PO4 . 
C 3 NNR A 1 202 202 NNR NNR . 
D 4 UNX A 1 203 1 UNX UNX . 
E 4 UNX A 1 204 2 UNX UNX . 
F 4 UNX A 1 205 3 UNX UNX . 
G 4 UNX A 1 206 4 UNX UNX . 
H 4 UNX A 1 207 5 UNX UNX . 
I 4 UNX A 1 208 6 UNX UNX . 
J 4 UNX A 1 209 7 UNX UNX . 
K 5 HOH A 1 301 301 HOH HOH . 
K 5 HOH A 2 302 302 HOH HOH . 
K 5 HOH A 3 303 303 HOH HOH . 
K 5 HOH A 4 304 304 HOH HOH . 
K 5 HOH A 5 305 305 HOH HOH . 
K 5 HOH A 6 306 306 HOH HOH . 
K 5 HOH A 7 307 307 HOH HOH . 
K 5 HOH A 8 308 308 HOH HOH . 
K 5 HOH A 9 309 309 HOH HOH . 
K 5 HOH A 10 310 310 HOH HOH . 
K 5 HOH A 11 311 311 HOH HOH . 
K 5 HOH A 12 312 312 HOH HOH . 
K 5 HOH A 13 313 313 HOH HOH . 
K 5 HOH A 14 314 314 HOH HOH . 
K 5 HOH A 15 315 315 HOH HOH . 
K 5 HOH A 16 316 316 HOH HOH . 
K 5 HOH A 17 317 317 HOH HOH . 
K 5 HOH A 18 318 318 HOH HOH . 
K 5 HOH A 19 319 319 HOH HOH . 
K 5 HOH A 20 320 320 HOH HOH . 
K 5 HOH A 21 321 321 HOH HOH . 
K 5 HOH A 22 322 322 HOH HOH . 
K 5 HOH A 23 323 323 HOH HOH . 
K 5 HOH A 24 324 324 HOH HOH . 
K 5 HOH A 25 325 325 HOH HOH . 
K 5 HOH A 26 326 326 HOH HOH . 
K 5 HOH A 27 327 327 HOH HOH . 
K 5 HOH A 28 328 328 HOH HOH . 
K 5 HOH A 29 329 329 HOH HOH . 
K 5 HOH A 30 330 330 HOH HOH . 
K 5 HOH A 31 331 331 HOH HOH . 
K 5 HOH A 32 332 332 HOH HOH . 
K 5 HOH A 33 333 333 HOH HOH . 
K 5 HOH A 34 334 334 HOH HOH . 
K 5 HOH A 35 335 335 HOH HOH . 
K 5 HOH A 36 336 336 HOH HOH . 
K 5 HOH A 37 337 337 HOH HOH . 
K 5 HOH A 38 338 338 HOH HOH . 
K 5 HOH A 39 339 339 HOH HOH . 
K 5 HOH A 40 340 340 HOH HOH . 
K 5 HOH A 41 341 341 HOH HOH . 
K 5 HOH A 42 342 342 HOH HOH . 
K 5 HOH A 43 343 343 HOH HOH . 
K 5 HOH A 44 344 344 HOH HOH . 
K 5 HOH A 45 345 345 HOH HOH . 
K 5 HOH A 46 346 346 HOH HOH . 
K 5 HOH A 47 347 347 HOH HOH . 
K 5 HOH A 48 348 348 HOH HOH . 
K 5 HOH A 49 349 349 HOH HOH . 
K 5 HOH A 50 350 350 HOH HOH . 
K 5 HOH A 51 351 351 HOH HOH . 
K 5 HOH A 52 352 352 HOH HOH . 
K 5 HOH A 53 353 353 HOH HOH . 
K 5 HOH A 54 354 354 HOH HOH . 
K 5 HOH A 55 355 355 HOH HOH . 
K 5 HOH A 56 356 356 HOH HOH . 
K 5 HOH A 57 357 357 HOH HOH . 
K 5 HOH A 58 358 358 HOH HOH . 
K 5 HOH A 59 359 359 HOH HOH . 
K 5 HOH A 60 360 360 HOH HOH . 
K 5 HOH A 61 361 361 HOH HOH . 
K 5 HOH A 62 362 362 HOH HOH . 
K 5 HOH A 63 363 363 HOH HOH . 
K 5 HOH A 64 364 364 HOH HOH . 
K 5 HOH A 65 365 365 HOH HOH . 
K 5 HOH A 66 366 366 HOH HOH . 
K 5 HOH A 67 367 367 HOH HOH . 
K 5 HOH A 68 368 368 HOH HOH . 
K 5 HOH A 69 369 369 HOH HOH . 
K 5 HOH A 70 370 370 HOH HOH . 
K 5 HOH A 71 371 371 HOH HOH . 
K 5 HOH A 72 372 372 HOH HOH . 
K 5 HOH A 73 373 373 HOH HOH . 
K 5 HOH A 74 374 374 HOH HOH . 
K 5 HOH A 75 375 375 HOH HOH . 
K 5 HOH A 76 376 376 HOH HOH . 
K 5 HOH A 77 377 377 HOH HOH . 
K 5 HOH A 78 378 378 HOH HOH . 
K 5 HOH A 79 379 379 HOH HOH . 
K 5 HOH A 80 380 380 HOH HOH . 
K 5 HOH A 81 381 381 HOH HOH . 
K 5 HOH A 82 382 382 HOH HOH . 
K 5 HOH A 83 383 383 HOH HOH . 
K 5 HOH A 84 384 384 HOH HOH . 
K 5 HOH A 85 385 385 HOH HOH . 
K 5 HOH A 86 386 386 HOH HOH . 
K 5 HOH A 87 387 387 HOH HOH . 
K 5 HOH A 88 388 388 HOH HOH . 
K 5 HOH A 89 389 389 HOH HOH . 
K 5 HOH A 90 390 390 HOH HOH . 
K 5 HOH A 91 391 391 HOH HOH . 
K 5 HOH A 92 392 392 HOH HOH . 
K 5 HOH A 93 393 393 HOH HOH . 
K 5 HOH A 94 394 394 HOH HOH . 
K 5 HOH A 95 395 395 HOH HOH . 
K 5 HOH A 96 396 396 HOH HOH . 
K 5 HOH A 97 397 397 HOH HOH . 
K 5 HOH A 98 398 398 HOH HOH . 
K 5 HOH A 99 399 399 HOH HOH . 
K 5 HOH A 100 400 400 HOH HOH . 
K 5 HOH A 101 401 401 HOH HOH . 
K 5 HOH A 102 402 402 HOH HOH . 
K 5 HOH A 103 403 403 HOH HOH . 
K 5 HOH A 104 404 404 HOH HOH . 
K 5 HOH A 105 405 405 HOH HOH . 
K 5 HOH A 106 406 406 HOH HOH . 
K 5 HOH A 107 407 407 HOH HOH . 
K 5 HOH A 108 408 408 HOH HOH . 
K 5 HOH A 109 409 409 HOH HOH . 
K 5 HOH A 110 410 410 HOH HOH . 
K 5 HOH A 111 411 411 HOH HOH . 
K 5 HOH A 112 412 412 HOH HOH . 
K 5 HOH A 113 413 413 HOH HOH . 
K 5 HOH A 114 414 414 HOH HOH . 
K 5 HOH A 115 415 415 HOH HOH . 
K 5 HOH A 116 416 416 HOH HOH . 
K 5 HOH A 117 417 417 HOH HOH . 
K 5 HOH A 118 418 418 HOH HOH . 
K 5 HOH A 119 419 419 HOH HOH . 
K 5 HOH A 120 420 420 HOH HOH . 
K 5 HOH A 121 421 421 HOH HOH . 
K 5 HOH A 122 422 422 HOH HOH . 
K 5 HOH A 123 423 423 HOH HOH . 
K 5 HOH A 124 424 424 HOH HOH . 
K 5 HOH A 125 425 425 HOH HOH . 
K 5 HOH A 126 426 426 HOH HOH . 
K 5 HOH A 127 427 427 HOH HOH . 
K 5 HOH A 128 428 428 HOH HOH . 
K 5 HOH A 129 429 429 HOH HOH . 
K 5 HOH A 130 430 430 HOH HOH . 
K 5 HOH A 131 431 431 HOH HOH . 
K 5 HOH A 132 432 432 HOH HOH . 
K 5 HOH A 133 434 434 HOH HOH . 
K 5 HOH A 134 435 435 HOH HOH . 
K 5 HOH A 135 436 436 HOH HOH . 
K 5 HOH A 136 437 437 HOH HOH . 
K 5 HOH A 137 438 438 HOH HOH . 
K 5 HOH A 138 439 439 HOH HOH . 
K 5 HOH A 139 440 440 HOH HOH . 
K 5 HOH A 140 441 441 HOH HOH . 
K 5 HOH A 141 442 442 HOH HOH . 
K 5 HOH A 142 443 443 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2R NNR . . . C 3 10.122 -13.046 1.118 1 13.91 ? O2R NNR 202 A 1 
HETATM 2 C C2R NNR . . . C 3 9.634 -14.378 1.356 1 12.83 ? C2R NNR 202 A 1 
HETATM 3 C C3R NNR . . . C 3 10.68 -15.439 0.939 1 13.68 ? C3R NNR 202 A 1 
HETATM 4 O O3R NNR . . . C 3 11.826 -14.872 0.22 1 12.84 ? O3R NNR 202 A 1 
HETATM 5 C C4R NNR . . . C 3 9.877 -16.351 -0.022 1 14.24 ? C4R NNR 202 A 1 
HETATM 6 C C5R NNR . . . C 3 9.971 -17.865 0.197 1 14.83 ? C5R NNR 202 A 1 
HETATM 7 O O5R NNR . . . C 3 9.482 -18.495 -1.004 1 15.26 ? O5R NNR 202 A 1 
HETATM 8 O O4R NNR . . . C 3 8.476 -15.974 0.144 1 15.62 ? O4R NNR 202 A 1 
HETATM 9 C C1R NNR . . . C 3 8.486 -14.596 0.403 1 14.18 ? C1R NNR 202 A 1 
HETATM 10 N N1 NNR . . . C 3 7.228 -14.272 1.086 1 16.35 ? N1 NNR 202 A 1 
HETATM 11 C C2 NNR . . . C 3 6.239 -15.237 1.321 1 16.49 ? C2 NNR 202 A 1 
HETATM 12 C C6 NNR . . . C 3 7.044 -12.93 1.482 1 17.65 ? C6 NNR 202 A 1 
HETATM 13 C C5 NNR . . . C 3 5.869 -12.55 2.135 1 19.99 ? C5 NNR 202 A 1 
HETATM 14 C C4 NNR . . . C 3 4.887 -13.512 2.382 1 19.98 ? C4 NNR 202 A 1 
HETATM 15 C C3 NNR . . . C 3 5.064 -14.851 1.978 1 21.08 ? C3 NNR 202 A 1 
HETATM 16 C C7 NNR . . . C 3 3.942 -15.874 2.252 1 21.28 ? C7 NNR 202 A 1 
HETATM 17 O O7 NNR . . . C 3 3.007 -15.588 3.008 1 26.63 ? O7 NNR 202 A 1 
HETATM 18 N N7 NNR . . . C 3 4.052 -17.056 1.615 1 22.46 ? N7 NNR 202 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           18 
#