data_2QTD # _model_server_result.job_id wM5Hc4TRa-Q5MEZuxgsq9w _model_server_result.datetime_utc '2024-12-21 14:19:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":105}' # _entry.id 2QTD # _exptl.entry_id 2QTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QTD _cell.length_a 35.86 _cell.length_b 54.12 _cell.length_c 56.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 1 1_555 A N ILE 3 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C ASN 4 A ASN 3 1_555 A N MSE 5 A MSE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale3 A C MSE 5 A MSE 4 1_555 A N LYS 6 A LYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C SER 10 A SER 9 1_555 A N MSE 11 A MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C MSE 11 A MSE 10 1_555 A N ASP 12 A ASP 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 317 n n C C2 TRS sing 318 n n C C3 TRS sing 319 n n C N TRS sing 320 n n C1 O1 TRS sing 321 n n C1 H11 TRS sing 322 n n C1 H12 TRS sing 323 n n C2 O2 TRS sing 324 n n C2 H21 TRS sing 325 n n C2 H22 TRS sing 326 n n C3 O3 TRS sing 327 n n C3 H31 TRS sing 328 n n C3 H32 TRS sing 329 n n N HN1 TRS sing 330 n n N HN2 TRS sing 331 n n N HN3 TRS sing 332 n n O1 HO1 TRS sing 333 n n O2 HO2 TRS sing 334 n n O3 HO3 TRS sing 335 n n # _atom_sites.entry_id 2QTD _atom_sites.fract_transf_matrix[1][1] 0.027886 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 105 1 TRS TRS . C 3 PG4 A 1 106 2 PG4 PG4 . D 3 PG4 A 1 107 3 PG4 PG4 . E 3 PG4 A 1 108 4 PG4 PG4 . F 3 PG4 A 1 109 5 PG4 PG4 . G 3 PG4 A 1 110 6 PG4 PG4 . H 3 PG4 A 1 111 7 PG4 PG4 . I 3 PG4 A 1 112 8 PG4 PG4 . J 4 HOH A 1 113 9 HOH HOH . J 4 HOH A 2 114 10 HOH HOH . J 4 HOH A 3 115 11 HOH HOH . J 4 HOH A 4 116 12 HOH HOH . J 4 HOH A 5 117 13 HOH HOH . J 4 HOH A 6 118 14 HOH HOH . J 4 HOH A 7 119 15 HOH HOH . J 4 HOH A 8 120 16 HOH HOH . J 4 HOH A 9 121 17 HOH HOH . J 4 HOH A 10 122 18 HOH HOH . J 4 HOH A 11 123 19 HOH HOH . J 4 HOH A 12 124 20 HOH HOH . J 4 HOH A 13 125 21 HOH HOH . J 4 HOH A 14 126 22 HOH HOH . J 4 HOH A 15 127 23 HOH HOH . J 4 HOH A 16 128 24 HOH HOH . J 4 HOH A 17 129 25 HOH HOH . J 4 HOH A 18 130 26 HOH HOH . J 4 HOH A 19 131 27 HOH HOH . J 4 HOH A 20 132 28 HOH HOH . J 4 HOH A 21 133 29 HOH HOH . J 4 HOH A 22 134 30 HOH HOH . J 4 HOH A 23 135 31 HOH HOH . J 4 HOH A 24 136 32 HOH HOH . J 4 HOH A 25 137 33 HOH HOH . J 4 HOH A 26 138 34 HOH HOH . J 4 HOH A 27 139 35 HOH HOH . J 4 HOH A 28 140 36 HOH HOH . J 4 HOH A 29 141 37 HOH HOH . J 4 HOH A 30 142 38 HOH HOH . J 4 HOH A 31 143 39 HOH HOH . J 4 HOH A 32 144 40 HOH HOH . J 4 HOH A 33 145 41 HOH HOH . J 4 HOH A 34 146 42 HOH HOH . J 4 HOH A 35 147 43 HOH HOH . J 4 HOH A 36 148 44 HOH HOH . J 4 HOH A 37 149 45 HOH HOH . J 4 HOH A 38 150 46 HOH HOH . J 4 HOH A 39 151 47 HOH HOH . J 4 HOH A 40 152 48 HOH HOH . J 4 HOH A 41 153 49 HOH HOH . J 4 HOH A 42 154 50 HOH HOH . J 4 HOH A 43 155 51 HOH HOH . J 4 HOH A 44 156 52 HOH HOH . J 4 HOH A 45 157 53 HOH HOH . J 4 HOH A 46 158 54 HOH HOH . J 4 HOH A 47 159 55 HOH HOH . J 4 HOH A 48 160 56 HOH HOH . J 4 HOH A 49 161 57 HOH HOH . J 4 HOH A 50 162 58 HOH HOH . J 4 HOH A 51 163 59 HOH HOH . J 4 HOH A 52 164 60 HOH HOH . J 4 HOH A 53 165 61 HOH HOH . J 4 HOH A 54 166 62 HOH HOH . J 4 HOH A 55 167 63 HOH HOH . J 4 HOH A 56 168 64 HOH HOH . J 4 HOH A 57 169 65 HOH HOH . J 4 HOH A 58 170 66 HOH HOH . J 4 HOH A 59 171 67 HOH HOH . J 4 HOH A 60 172 68 HOH HOH . J 4 HOH A 61 173 69 HOH HOH . J 4 HOH A 62 174 70 HOH HOH . J 4 HOH A 63 175 71 HOH HOH . J 4 HOH A 64 176 72 HOH HOH . J 4 HOH A 65 177 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 19.803 17.756 -17.314 0.5 24.65 ? C TRS 105 A 1 HETATM 2 C C1 TRS . . . B 2 18.501 17.408 -16.606 0.5 25.01 ? C1 TRS 105 A 1 HETATM 3 C C2 TRS . . . B 2 19.718 17.541 -18.837 0.5 28.12 ? C2 TRS 105 A 1 HETATM 4 C C3 TRS . . . B 2 20.953 16.986 -16.68 0.5 24.07 ? C3 TRS 105 A 1 HETATM 5 N N TRS . . . B 2 19.887 19.146 -17.076 0.5 27.28 ? N TRS 105 A 1 HETATM 6 O O1 TRS . . . B 2 18.313 17.56 -15.21 0.5 8.61 ? O1 TRS 105 A 1 HETATM 7 O O2 TRS . . . B 2 18.926 16.477 -19.323 0.5 35.06 ? O2 TRS 105 A 1 HETATM 8 O O3 TRS . . . B 2 22.291 17.215 -17.042 0.5 17.11 ? O3 TRS 105 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #