data_2QTN # _model_server_result.job_id tYVTMUqXvquSipLk-FJ7iQ _model_server_result.datetime_utc '2024-11-19 00:24:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qtn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":191}' # _entry.id 2QTN # _exptl.entry_id 2QTN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.204 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINATE MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QTN _cell.length_a 95.895 _cell.length_b 95.895 _cell.length_c 84.532 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 27 A HIS 27 1_555 C MG MG . A MG 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc2 L O HOH . A HOH 219 1_555 G MG MG . B MG 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc3 B NE2 HIS 27 B HIS 27 1_555 G MG MG . B MG 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C11 H14 N O9 P' _chem_comp.formula_weight 335.204 _chem_comp.id NCN _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINATE MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NAMN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P NCN sing 250 n n P O2P NCN doub 251 n n P O3P NCN sing 252 n n P O5' NCN sing 253 n n O1P HOP1 NCN sing 254 n n O5' C5' NCN sing 255 n n C5' C4' NCN sing 256 n n C5' "H5'1" NCN sing 257 n n C5' "H5'2" NCN sing 258 n n C4' O4' NCN sing 259 n n C4' C3' NCN sing 260 n n C4' H4' NCN sing 261 n n O4' C1' NCN sing 262 n n C3' O3' NCN sing 263 n n C3' C2' NCN sing 264 n n C3' H3' NCN sing 265 n n O3' "HO'3" NCN sing 266 n n C2' O2' NCN sing 267 n n C2' C1' NCN sing 268 n n C2' H2' NCN sing 269 n n O2' "HO'2" NCN sing 270 n n C1' N1 NCN sing 271 n n C1' H1' NCN sing 272 n n N1 C6 NCN sing 273 n y N1 C2 NCN doub 274 n y C6 C5 NCN doub 275 n y C6 H6 NCN sing 276 n n C5 C4 NCN sing 277 n y C5 H5 NCN sing 278 n n C4 C3 NCN doub 279 n y C4 H4 NCN sing 280 n n C3 C2 NCN sing 281 n y C3 C7 NCN sing 282 n n C2 H2 NCN sing 283 n n C7 O7 NCN sing 284 n n C7 O8 NCN doub 285 n n O7 HO7 NCN sing 286 n n # _atom_sites.entry_id 2QTN _atom_sites.fract_transf_matrix[1][1] 0.010428 _atom_sites.fract_transf_matrix[1][2] 0.006021 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 190 1 MG MG . D 3 GOL A 1 191 1 GOL GOL . E 3 GOL A 1 192 4 GOL GOL . F 3 GOL A 1 193 5 GOL GOL . G 2 MG B 1 190 2 MG MG . H 4 NCN B 1 191 2 NCN NCN . I 3 GOL B 1 192 2 GOL GOL . J 3 GOL B 1 193 3 GOL GOL . K 3 GOL B 1 194 6 GOL GOL . L 5 HOH A 1 194 4 HOH WAT . L 5 HOH A 2 195 5 HOH WAT . L 5 HOH A 3 196 6 HOH WAT . L 5 HOH A 4 197 10 HOH WAT . L 5 HOH A 5 198 11 HOH WAT . L 5 HOH A 6 199 14 HOH WAT . L 5 HOH A 7 200 15 HOH WAT . L 5 HOH A 8 201 17 HOH WAT . L 5 HOH A 9 202 18 HOH WAT . L 5 HOH A 10 203 20 HOH WAT . L 5 HOH A 11 204 22 HOH WAT . L 5 HOH A 12 205 28 HOH WAT . L 5 HOH A 13 206 35 HOH WAT . L 5 HOH A 14 207 37 HOH WAT . L 5 HOH A 15 208 38 HOH WAT . L 5 HOH A 16 209 39 HOH WAT . L 5 HOH A 17 210 43 HOH WAT . L 5 HOH A 18 211 48 HOH WAT . L 5 HOH A 19 212 55 HOH WAT . L 5 HOH A 20 213 58 HOH WAT . L 5 HOH A 21 214 61 HOH WAT . L 5 HOH A 22 215 63 HOH WAT . L 5 HOH A 23 216 65 HOH WAT . L 5 HOH A 24 217 66 HOH WAT . L 5 HOH A 25 218 67 HOH WAT . L 5 HOH A 26 219 68 HOH WAT . L 5 HOH A 27 220 69 HOH WAT . L 5 HOH A 28 221 70 HOH WAT . L 5 HOH A 29 222 72 HOH WAT . L 5 HOH A 30 223 74 HOH WAT . L 5 HOH A 31 224 75 HOH WAT . L 5 HOH A 32 225 76 HOH WAT . L 5 HOH A 33 226 81 HOH WAT . L 5 HOH A 34 227 83 HOH WAT . L 5 HOH A 35 228 86 HOH WAT . L 5 HOH A 36 229 90 HOH WAT . L 5 HOH A 37 230 93 HOH WAT . L 5 HOH A 38 231 94 HOH WAT . L 5 HOH A 39 232 98 HOH WAT . L 5 HOH A 40 233 106 HOH WAT . L 5 HOH A 41 234 114 HOH WAT . L 5 HOH A 42 235 116 HOH WAT . L 5 HOH A 43 236 118 HOH WAT . L 5 HOH A 44 237 122 HOH WAT . L 5 HOH A 45 238 129 HOH WAT . L 5 HOH A 46 239 130 HOH WAT . M 5 HOH B 1 195 1 HOH WAT . M 5 HOH B 2 196 2 HOH WAT . M 5 HOH B 3 197 3 HOH WAT . M 5 HOH B 4 198 7 HOH WAT . M 5 HOH B 5 199 8 HOH WAT . M 5 HOH B 6 200 9 HOH WAT . M 5 HOH B 7 201 12 HOH WAT . M 5 HOH B 8 202 13 HOH WAT . M 5 HOH B 9 203 16 HOH WAT . M 5 HOH B 10 204 19 HOH WAT . M 5 HOH B 11 205 21 HOH WAT . M 5 HOH B 12 206 23 HOH WAT . M 5 HOH B 13 207 24 HOH WAT . M 5 HOH B 14 208 25 HOH WAT . M 5 HOH B 15 209 26 HOH WAT . M 5 HOH B 16 210 27 HOH WAT . M 5 HOH B 17 211 29 HOH WAT . M 5 HOH B 18 212 30 HOH WAT . M 5 HOH B 19 213 31 HOH WAT . M 5 HOH B 20 214 32 HOH WAT . M 5 HOH B 21 215 33 HOH WAT . M 5 HOH B 22 216 34 HOH WAT . M 5 HOH B 23 217 36 HOH WAT . M 5 HOH B 24 218 40 HOH WAT . M 5 HOH B 25 219 41 HOH WAT . M 5 HOH B 26 220 42 HOH WAT . M 5 HOH B 27 221 44 HOH WAT . M 5 HOH B 28 222 45 HOH WAT . M 5 HOH B 29 223 46 HOH WAT . M 5 HOH B 30 224 47 HOH WAT . M 5 HOH B 31 225 49 HOH WAT . M 5 HOH B 32 226 50 HOH WAT . M 5 HOH B 33 227 51 HOH WAT . M 5 HOH B 34 228 52 HOH WAT . M 5 HOH B 35 229 53 HOH WAT . M 5 HOH B 36 230 54 HOH WAT . M 5 HOH B 37 231 56 HOH WAT . M 5 HOH B 38 232 57 HOH WAT . M 5 HOH B 39 233 59 HOH WAT . M 5 HOH B 40 234 60 HOH WAT . M 5 HOH B 41 235 62 HOH WAT . M 5 HOH B 42 236 64 HOH WAT . M 5 HOH B 43 237 71 HOH WAT . M 5 HOH B 44 238 73 HOH WAT . M 5 HOH B 45 239 77 HOH WAT . M 5 HOH B 46 240 78 HOH WAT . M 5 HOH B 47 241 79 HOH WAT . M 5 HOH B 48 242 80 HOH WAT . M 5 HOH B 49 243 82 HOH WAT . M 5 HOH B 50 244 84 HOH WAT . M 5 HOH B 51 245 85 HOH WAT . M 5 HOH B 52 246 87 HOH WAT . M 5 HOH B 53 247 88 HOH WAT . M 5 HOH B 54 248 89 HOH WAT . M 5 HOH B 55 249 91 HOH WAT . M 5 HOH B 56 250 92 HOH WAT . M 5 HOH B 57 251 95 HOH WAT . M 5 HOH B 58 252 96 HOH WAT . M 5 HOH B 59 253 97 HOH WAT . M 5 HOH B 60 254 99 HOH WAT . M 5 HOH B 61 255 100 HOH WAT . M 5 HOH B 62 256 101 HOH WAT . M 5 HOH B 63 257 102 HOH WAT . M 5 HOH B 64 258 103 HOH WAT . M 5 HOH B 65 259 104 HOH WAT . M 5 HOH B 66 260 105 HOH WAT . M 5 HOH B 67 261 107 HOH WAT . M 5 HOH B 68 262 108 HOH WAT . M 5 HOH B 69 263 109 HOH WAT . M 5 HOH B 70 264 110 HOH WAT . M 5 HOH B 71 265 111 HOH WAT . M 5 HOH B 72 266 112 HOH WAT . M 5 HOH B 73 267 113 HOH WAT . M 5 HOH B 74 268 115 HOH WAT . M 5 HOH B 75 269 117 HOH WAT . M 5 HOH B 76 270 119 HOH WAT . M 5 HOH B 77 271 120 HOH WAT . M 5 HOH B 78 272 121 HOH WAT . M 5 HOH B 79 273 123 HOH WAT . M 5 HOH B 80 274 124 HOH WAT . M 5 HOH B 81 275 125 HOH WAT . M 5 HOH B 82 276 126 HOH WAT . M 5 HOH B 83 277 127 HOH WAT . M 5 HOH B 84 278 128 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P NCN . . . H 4 16.91 -29.643 20.325 1 89.34 ? P NCN 191 B 1 HETATM 2 O O1P NCN . . . H 4 16.525 -31.07 20.62 1 88.91 ? O1P NCN 191 B 1 HETATM 3 O O2P NCN . . . H 4 15.822 -28.651 20.958 1 89.71 ? O2P NCN 191 B 1 HETATM 4 O O3P NCN . . . H 4 18.356 -29.288 20.945 1 86.88 ? O3P NCN 191 B 1 HETATM 5 O O5' NCN . . . H 4 16.939 -29.44 18.732 1 83.5 ? O5' NCN 191 B 1 HETATM 6 C C5' NCN . . . H 4 17.342 -28.231 18.092 1 77.7 ? C5' NCN 191 B 1 HETATM 7 C C4' NCN . . . H 4 16.155 -27.248 18.025 1 73.95 ? C4' NCN 191 B 1 HETATM 8 O O4' NCN . . . H 4 14.912 -27.924 18.101 1 71.49 ? O4' NCN 191 B 1 HETATM 9 C C3' NCN . . . H 4 16.084 -26.25 19.212 1 73.05 ? C3' NCN 191 B 1 HETATM 10 O O3' NCN . . . H 4 16.902 -25.104 18.987 1 76.05 ? O3' NCN 191 B 1 HETATM 11 C C2' NCN . . . H 4 14.618 -25.818 19.178 1 70.6 ? C2' NCN 191 B 1 HETATM 12 O O2' NCN . . . H 4 14.467 -24.592 18.424 1 72.13 ? O2' NCN 191 B 1 HETATM 13 C C1' NCN . . . H 4 13.898 -26.961 18.414 1 67.56 ? C1' NCN 191 B 1 HETATM 14 N N1 NCN . . . H 4 12.792 -27.52 19.213 1 61.25 ? N1 NCN 191 B 1 HETATM 15 C C6 NCN . . . H 4 12.86 -28.8 19.741 1 57.34 ? C6 NCN 191 B 1 HETATM 16 C C5 NCN . . . H 4 11.779 -29.317 20.491 1 55.98 ? C5 NCN 191 B 1 HETATM 17 C C4 NCN . . . H 4 10.628 -28.508 20.689 1 55.88 ? C4 NCN 191 B 1 HETATM 18 C C3 NCN . . . H 4 10.576 -27.193 20.14 1 55.64 ? C3 NCN 191 B 1 HETATM 19 C C2 NCN . . . H 4 11.683 -26.737 19.407 1 58.33 ? C2 NCN 191 B 1 HETATM 20 C C7 NCN . . . H 4 9.365 -26.298 20.326 1 54.35 ? C7 NCN 191 B 1 HETATM 21 O O7 NCN . . . H 4 8.314 -26.737 21.01 1 51.9 ? O7 NCN 191 B 1 HETATM 22 O O8 NCN . . . H 4 9.361 -25.19 19.837 1 55.7 ? O8 NCN 191 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #