data_2QU5 # _model_server_result.job_id cwh7GJA0jzYySzrwGSfgAg _model_server_result.datetime_utc '2025-01-11 09:48:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qu5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 2QU5 # _exptl.entry_id 2QU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.824 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[[2-[[4-chloro-3-(trifluoromethyl)phenyl]amino]-3H-benzimidazol-5-yl]oxy]-N-methyl-pyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QU5 _cell.length_a 66.852 _cell.length_b 143.828 _cell.length_c 58.483 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H15 Cl F3 N5 O2' _chem_comp.formula_weight 461.824 _chem_comp.id 276 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[[2-[[4-chloro-3-(trifluoromethyl)phenyl]amino]-3H-benzimidazol-5-yl]oxy]-N-methyl-pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 N12 276 sing 1 n n N12 C10 276 sing 2 n n C10 O11 276 doub 3 n n C10 C4 276 sing 4 n n N3 C4 276 doub 5 n y N3 C2 276 sing 6 n y C4 C5 276 sing 7 n y C2 C1 276 doub 8 n y C5 C6 276 doub 9 n y C1 C6 276 sing 10 n y C6 O17 276 sing 11 n n O17 C18 276 sing 12 n n C19 C18 276 doub 13 n y C19 C20 276 sing 14 n y C18 C23 276 sing 15 n y C37 C38 276 doub 16 n y C37 C36 276 sing 17 n y CL44 C36 276 sing 18 n n C20 N27 276 sing 19 n y C20 C21 276 doub 20 n y C38 C33 276 sing 21 n y N27 C28 276 sing 22 n y C23 C22 276 doub 23 n y C36 C35 276 doub 24 n y C21 C22 276 sing 25 n y C21 N29 276 sing 26 n y C28 N32 276 sing 27 n n C28 N29 276 doub 28 n y C33 N32 276 sing 29 n n C33 C34 276 doub 30 n y C35 C34 276 sing 31 n y C35 C43 276 sing 32 n n F46 C43 276 sing 33 n n C43 F45 276 sing 34 n n C43 F47 276 sing 35 n n C1 H1 276 sing 36 n n C2 H2 276 sing 37 n n C5 H5 276 sing 38 n n N12 HN12 276 sing 39 n n C13 H131 276 sing 40 n n C13 H132 276 sing 41 n n C13 H133 276 sing 42 n n C19 H19 276 sing 43 n n C22 H22 276 sing 44 n n C23 H23 276 sing 45 n n N27 HN27 276 sing 46 n n N32 HN32 276 sing 47 n n C34 H34 276 sing 48 n n C37 H37 276 sing 49 n n C38 H38 276 sing 50 n n # _atom_sites.entry_id 2QU5 _atom_sites.fract_transf_matrix[1][1] 0.014958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 276 A 1 501 501 276 276 . C 3 HOH A 1 1 1 HOH WAT . C 3 HOH A 2 2 2 HOH WAT . C 3 HOH A 3 3 3 HOH WAT . C 3 HOH A 4 4 4 HOH WAT . C 3 HOH A 5 5 5 HOH WAT . C 3 HOH A 6 6 6 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 276 . . . B 2 67.022 90.619 42.448 1 38.49 ? C1 276 501 A 1 HETATM 2 C C2 276 . . . B 2 66.825 90.064 41.175 1 39.14 ? C2 276 501 A 1 HETATM 3 N N3 276 . . . B 2 67.835 89.926 40.265 1 41.17 ? N3 276 501 A 1 HETATM 4 C C4 276 . . . B 2 69.093 90.343 40.602 1 41.25 ? C4 276 501 A 1 HETATM 5 C C5 276 . . . B 2 69.366 90.903 41.845 1 40.42 ? C5 276 501 A 1 HETATM 6 C C6 276 . . . B 2 68.334 91.05 42.783 1 40.34 ? C6 276 501 A 1 HETATM 7 C C10 276 . . . B 2 70.212 90.21 39.645 1 43.6 ? C10 276 501 A 1 HETATM 8 O O11 276 . . . B 2 71.304 90.798 39.775 1 41.97 ? O11 276 501 A 1 HETATM 9 N N12 276 . . . B 2 69.937 89.378 38.601 1 42.91 ? N12 276 501 A 1 HETATM 10 C C13 276 . . . B 2 70.931 89.127 37.557 1 42.46 ? C13 276 501 A 1 HETATM 11 O O17 276 . . . B 2 68.765 91.619 43.981 1 41.55 ? O17 276 501 A 1 HETATM 12 C C18 276 . . . B 2 67.941 92.125 44.977 1 41.06 ? C18 276 501 A 1 HETATM 13 C C19 276 . . . B 2 67.223 93.337 44.821 1 44.19 ? C19 276 501 A 1 HETATM 14 C C20 276 . . . B 2 66.454 93.815 45.869 1 47.02 ? C20 276 501 A 1 HETATM 15 C C21 276 . . . B 2 66.384 93.084 47.106 1 46.63 ? C21 276 501 A 1 HETATM 16 C C22 276 . . . B 2 67.079 91.9 47.257 1 43.08 ? C22 276 501 A 1 HETATM 17 C C23 276 . . . B 2 67.862 91.411 46.194 1 42.19 ? C23 276 501 A 1 HETATM 18 N N27 276 . . . B 2 65.671 94.935 46.021 1 49.51 ? N27 276 501 A 1 HETATM 19 C C28 276 . . . B 2 65.166 94.893 47.263 1 50.52 ? C28 276 501 A 1 HETATM 20 N N29 276 . . . B 2 65.568 93.804 47.938 1 49.57 ? N29 276 501 A 1 HETATM 21 N N32 276 . . . B 2 64.282 95.903 47.862 1 50.87 ? N32 276 501 A 1 HETATM 22 C C33 276 . . . B 2 63.277 96.609 47.272 1 52.03 ? C33 276 501 A 1 HETATM 23 C C34 276 . . . B 2 62.818 97.712 47.991 1 53 ? C34 276 501 A 1 HETATM 24 C C35 276 . . . B 2 61.776 98.545 47.526 1 55.24 ? C35 276 501 A 1 HETATM 25 C C36 276 . . . B 2 61.188 98.21 46.255 1 54.94 ? C36 276 501 A 1 HETATM 26 C C37 276 . . . B 2 61.644 97.095 45.509 1 53.87 ? C37 276 501 A 1 HETATM 27 C C38 276 . . . B 2 62.689 96.295 46.02 1 52.4 ? C38 276 501 A 1 HETATM 28 C C43 276 . . . B 2 61.345 99.724 48.394 1 56.24 ? C43 276 501 A 1 HETATM 29 CL CL44 276 . . . B 2 59.89 99.121 45.528 1 56.78 ? CL44 276 501 A 1 HETATM 30 F F45 276 . . . B 2 60.152 99.412 48.855 1 55.39 ? F45 276 501 A 1 HETATM 31 F F46 276 . . . B 2 61.295 100.824 47.667 1 56.42 ? F46 276 501 A 1 HETATM 32 F F47 276 . . . B 2 62.204 99.919 49.403 1 57.54 ? F47 276 501 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #